PGS Catalog @PGSCatalog
The Polygenic Score (PGS) Catalog: an open database of polygenic scores and the relevant metadata needed to apply and evaluate them correctly. PGScatalog.org Joined August 2019-
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SURVEY ALERT!! Are you generating lists of effector/causal genes based on GWAS? Interested in using other’s lists? Hampered by lack of standards & infrastructure? Together with @KPortalNetwork we want your input to a new standard: docs.google.com/forms/d/e/1FAI… #gwas #genomics #FAIRdata
New PGS to predict multiple sclerosis (MS) risk in individuals with optic neuritis: pgscatalog.org/publication/PG… Thanks to @loginovic @RAOram @mnweedon for sharing! Share your scores at pgscatalog.org/submit
New PGS to predict multiple sclerosis (MS) risk in individuals with optic neuritis: pgscatalog.org/publication/PG… Thanks to @loginovic @RAOram @mnweedon for sharing! Share your scores at pgscatalog.org/submit
New multi-ancestry scores for Coronary Heart Disease included in the @PGSCatalog: pgscatalog.org/publication/PG… from @Johanna_L_Smith & @iftikhar_kullo et al. This and more in our latest release!
New multi-ancestry scores for Coronary Heart Disease included in the @PGSCatalog: pgscatalog.org/publication/PG… from @Johanna_L_Smith & @iftikhar_kullo et al. This and more in our latest release!
The theme of this week's release is pregnancy, with new PGS for preeclampsia (pgscatalog.org/publication/PG…) and gestational thrombocytopenia (pgscatalog.org/publication/PG…). Thanks to the authors from both papers for sharing the scores!
New year, newly released data! This release includes our first PGS for prurigo nodularis (from @c_vasavda @drshawnkwatra @EugeneSemenovMD @SashaGusevPosts) 👉pgscatalog.org/score/PGS00432…. See pgscatalog.org for all the data, and pgscatalog.org/submit to submit your PGS!
New year, newly released data! This release includes our first PGS for prurigo nodularis (from @c_vasavda @drshawnkwatra @EugeneSemenovMD @SashaGusevPosts) 👉pgscatalog.org/score/PGS00432…. See pgscatalog.org for all the data, and pgscatalog.org/submit to submit your PGS!
NEWS! A fantastic way to finish 2023! We are now part of @ELIXIREurope Core Data Resources! We will continue in 2024 promoting #openaccess following #FAIRprinciples! Submit your #gwas data on bit.ly/38rNSjx We are also on @LinkedIn, join us there!
NEWS! A fantastic way to finish 2023! We are now part of @ELIXIREurope Core Data Resources! We will continue in 2024 promoting #openaccess following #FAIRprinciples! Submit your #gwas data on bit.ly/38rNSjx We are also on @LinkedIn, join us there!
"Starting is easy, sustaining is hard" - thoughts on resource sustainability from GWAS Catalog PI @DrP_stuff
"Starting is easy, sustaining is hard" - thoughts on resource sustainability from GWAS Catalog PI @DrP_stuff
Stop, you’ll make us blush! ☺️
Amazing to see how many talks and posters at #AHSG23 are using @PGSCatalog.... kudos to @iamslambert @minouye271 @JALMacArthur @DrP_stuff @laurentgil33 and many others at @emblebi and @CAMBRIDGE_CEU for creating such a valuable community tool 👏
📢New data! We've been busy on the backend updating our DB, but last week we released lots of new PGS (especially for blood pressure). Check out our latest release 👉 pgscatalog.org/latest_release/
If you're using our pgsc_calc tool please update to the latest version (v2.0.0-alpha.3 : github.com/PGScatalog/pgs…) as there some new features (updated reference panel of HGDP+1kG) and critical bug fixes! #PolygenicScores #OpenSource
If you're using our pgsc_calc tool please update to the latest version (v2.0.0-alpha.3 : github.com/PGScatalog/pgs…) as there some new features (updated reference panel of HGDP+1kG) and critical bug fixes! #PolygenicScores #OpenSource
We're hiring a bioinformatician for the @PGSCatalog team! If you're keen on polygenic scores, #FAIRdata, developing tools, and collaborating with colleagues @GWASCatalog @emblebi @HDR_UK this is for you! 🔗: jobs.cam.ac.uk/job/42946/
Thanks to @AndrewHaoyu @nilanjan10c et al for sharing the PGS from their recent @NatureGenet paper! You can find them in the catalog 👉: pgscatalog.org/publication/PG… (citation to be updated)
Thanks to @AndrewHaoyu @nilanjan10c et al for sharing the PGS from their recent @NatureGenet paper! You can find them in the catalog 👉: pgscatalog.org/publication/PG… (citation to be updated)
We’re hiring! If you’re a bioinformatician with strong Python skills, interested in challenges of big data provision to the genomics community and collaborating with colleagues @PGSCatalog @OpenTargets @eQTLCatalogue @emblebi, this could be for you! bit.ly/3NY5rPe
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One more week to apply for an open postdoc position with @minouye271 and I @CAMBRIDGE_CEU @HLRI_Cambridge! Perfect for anyone interested in multi-omics and multi-morbidity. Link: jobs.cam.ac.uk/job/45465/
Calling all early career researchers interested in polygenic scores, multi-omics and multi-morbidity! @iamslambert and I are recruiting a Postdoc in Biomedical Data Science, based at the gorgeous @HLRI_Cambridge @CAMBRIDGE_CEU @CamBioCampus jobs.cam.ac.uk/job/45465/
Having a wonderful time today at the @HDR_UK Annual Meeting. Apparently, I'm the only one so far who's incorporated a bit of art into their talk?! Check out @Loic_Lnlg talking about Green Algorithms and sustainable data science tomorrow 🌱
Great to contribute to the @HumanEcosystemz @EBItraining course yesterday on behalf of the @PGSCatalog with colleagues from @GWASCatalog & @OpenTargets. Looking forward to seeing some of the other talks on measuring environmental exposures tomorrow!
Day 2 of "Exploring gene and environmental exposure interactions to understand human health and disease". Analysing human cohort data with training from @GWASCatalog, @OpenTargets & calculating Polygenic Risk Scores with Sam Lambert @iamslambert @EBItraining
Polygenic risk scores in atrial fibrillation: associations and clinical utility in disease prediction heartrhythmjournal.com/article/S1547-… Well done Joel Gibson (who recently joined the @PGSCatalog team) & @jhfrudd!
@rpetit3 @gcloudChris 5. stevekm/nextflow-demos - ★88, 25 forks 6. genomicsITER/NanoCLUST - ★87, 41 forks 7. connor-lab/ncov2019-artic-nf - ★86, 87 forks 8. @fmarquesalmeida/bacannot - ★86, 9 forks 9. @PGSCatalog/pgsc_calc - ★82, 13 forks
@GWASCatalog @JALMacArthur @ELIXIREurope @LinkedIn congratulations! so well deserved
NEWS! A fantastic way to finish 2023! We are now part of @ELIXIREurope Core Data Resources! We will continue in 2024 promoting #openaccess following #FAIRprinciples! Submit your #gwas data on bit.ly/38rNSjx We are also on @LinkedIn, join us there!
🎉 ELIXIR has announced the #lifescience data and #interoperability resources joining the list of 🙌 Core Data Resources (#ELIXIRCDRs), ELIXIR Deposition Databases, and Recommended Interoperability Resources (#ELIXIRRIRs). Find out more 👇 loom.ly/holuHVs
"Starting is easy, sustaining is hard" - thoughts on resource sustainability from GWAS Catalog PI @DrP_stuff
“If people are still using your product to innovate, you should continue to sustain it.” @DrP_stuff shares insights and recommendations from the @EoscLife project on how to make informatics projects more sustainable. ebi.ac.uk/about/news/per…
“If people are still using your product to innovate, you should continue to sustain it.” @DrP_stuff shares insights and recommendations from the @EoscLife project on how to make informatics projects more sustainable. ebi.ac.uk/about/news/per…
definitely still room for improvement, but is there any clearer sign that a lot of scientists want to do right by society and just need the training on how to do so...
it is honestly incredible how many papers I have seen clearly defining their population descriptors and justifying their use since the release of the NASEM report in March
Amazing to see how many talks and posters at #AHSG23 are using @PGSCatalog.... kudos to @iamslambert @minouye271 @JALMacArthur @DrP_stuff @laurentgil33 and many others at @emblebi and @CAMBRIDGE_CEU for creating such a valuable community tool 👏
Usually I keep personal life off of here but since I exposed myself at NSGC.... Surprise! I get to meet the little foot that's been kicking me next year. Forgive me in advance (and retrospectively) for any MIA-ness please ❤️
#OpenSource software that scientists use daily is often undervalued + lacks funding. Learn how we’re supporting these vital tools to help accelerate understanding of the mysteries of the cell czi.co/OpenSourceSoft…
We’re partnering with @KavliFoundation + @wellcometrust for @cziscience’s new #OpenSource software funding opportunity to support essential #OpenSource software for science. Signal boosts welcome czi.co/OpenSourceSoft…
We’ve partnered with @cziscience and @KavliFoundation to fund open source software projects essential for biomedical research. Deadline for Letter of Intent: 17 October 2023 Level of funding: US$100,000 to US$400,000 for two years Learn more and apply ⤵️ wellc.me/3Emwzlo
Thanks to the team of PGS Catalog for the efforts of sharing the PRS @PGSCatalog
Thanks to @AndrewHaoyu @nilanjan10c et al for sharing the PGS from their recent @NatureGenet paper! You can find them in the catalog 👉: pgscatalog.org/publication/PG… (citation to be updated)
Our new multi-ancestry PRS paper is now on Nature Genetics: nature.com/articles/s4158…! Thanks for the guidance from @nilanjan10c @XihongLin . Also huge thanks to all the amazing collborators: @JiananZhan @Jin_10ustc @JingningZhang35 and all others 1/X.
We have an open senior developer post for @EBIOLS to build our semantic tool set. We are an international team based close to Cambridge UK building highly accessed semantic services with @HarmseHenriette embl.org/jobs/position/…
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