Xinming Tu @TuXinming
PhD student @uwcse; ML&CompGenomics&GeneRegulation; Bio&CS undergrad @PKU1898; Intern@Yale, Microsoft Research Asia, Genentech XinmingTu.cn Seattle, WA Joined January 2019-
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Two new chapters from my open-access textbook in human population genetics are now online: - Population structure: I. Ancestry estimation - Population structure: II. More about admixture web.stanford.edu/group/pritchar…
Two new chapters from my open-access textbook in human population genetics are now online: - Population structure: I. Ancestry estimation - Population structure: II. More about admixture web.stanford.edu/group/pritchar…
One of the best textbooks I have ever read. I just finished the second chapter on yesterday's flight and now have two more chapters to read! @jkpritch Thanks a lot for the contribution to the community!
One of the best textbooks I have ever read. I just finished the second chapter on yesterday's flight and now have two more chapters to read! @jkpritch Thanks a lot for the contribution to the community!
Joins us for Machine Learning in Computational Biology (MLCB) 2024 mlcb.github.io Submission deadline: June 15 Conference dates: Sept 5 & 6
Happy to share that our paper on leveraging foundation models to foster the explainability and transparency of medical AI has been published today in @NatureMedicine! Check it out here: nature.com/articles/s4159…
Our work on studying chromatin context-dependent regulation of prime editing is officially out on @CELL. cell.com/cell/fulltext/…
My first paper in aging research! The beginning of a journey dedicated to unlocking the mysteries of aging. Eager to delve deeper and contribute more fantastic research to this fascinating field with @suinleelab news-medical.net/news/20231109/…
Sequence-based ML methods (Enformer, ChromBPNet...) are invaluable in genomics but the ecosystem for their *use* after training is less developed. Introducing, `tangermeme`: a PyTorch library for genomics discovery for everything-other-than-the-model. github.com/jmschrei/tange… 1.
Hi friends! We are looking to hire a postdoc to join our group @CMUCompBio @SCSatCMU, to work on exciting projects related to identifying disease genes by integrating GWAS and functional genomics. mzhanglab.github.io/openings/
Our review article is out!🎉 Grateful for the chance @NatureRevGenet @pnatarajanmd to delve into the similarities, differences, and interplay between somatic and germline mutations🧬with super talented @TimCoorens! Also, thank @haertl17 for the dedication in handling the review!
Our review article is out!🎉 Grateful for the chance @NatureRevGenet @pnatarajanmd to delve into the similarities, differences, and interplay between somatic and germline mutations🧬with super talented @TimCoorens! Also, thank @haertl17 for the dedication in handling the review! https://t.co/Pdw4vbgHJc
Thrilled to share our recently developed toolbox #Starfysh ⭐️🐟 published in @NatureBiotech! What I like most about this tool is its flexibility in integrating samples across patients without scRNA references. Discover more on our GitHub page: tinyurl.com/3dm8sz8z😃
Thrilled to share our recently developed toolbox #Starfysh ⭐️🐟 published in @NatureBiotech! What I like most about this tool is its flexibility in integrating samples across patients without scRNA references. Discover more on our GitHub page: tinyurl.com/3dm8sz8z😃
The fantastic Machine Learning in Compbio #MLCB2023 papers are up at proceedings.mlr.press/v240/. Thanks @lawrennd & PMLR! We have talk recordings too at youtube.com/@mlcbconf/.
1/🚀 Introducing an identifiability theory for latent variable models that compare patterns across datasets. Can we identify salient variation that is specific to a data set, and under which conditions? With wonderful collaborators @jchuetter, @EhsanHRA, @jkpritch, and Aviv Regev
📢 #ICML2024 authors! Help improve ML peer review! 🔬📝 Check your inbox for an email titled "[ICML 2024] Author Survey" and rank your submissions. 🏆📈 Your confidential input is crucial, and won't affect decisions. 🔒✅ Survey link in email or "Author Tasks" on OpenReview.
Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out the full agenda for our Single Cell Genomics Day on Friday, 3/29. All talks will be live-streamed (no registration required) at satijalab.org/scgd
📢 Exciting news! The @UW Nathan Shock Center Basic Biology of Aging is hosting the “AI meets Biology of Aging” (AIMBA) virtual workshop on 5/22. Dive into cutting-edge research at the crossroads of AI and geroscience, with our stellar lineup of speakers! sites.google.com/cs.washington.…
Honored to deliver a distinguished keynote at ISMB 2024! Join us in Montreal this July 12-16: iscb.org/ismb2024/progr…
A true curiosity-driven journey, fulfilling one of my childhood dreams! The tail loss marks a pivotal evolutionary step towards humans and apes. But how did it happen? rdcu.be/dzTba @ItaiYanai @JefBoeke
A true curiosity-driven journey, fulfilling one of my childhood dreams! The tail loss marks a pivotal evolutionary step towards humans and apes. But how did it happen? rdcu.be/dzTba @ItaiYanai @JefBoeke
Another quick note. One of the (ex-) students in the lab quickly tested how promoter GC content (% G/Cs) correlates with expression in the benchmark dataset. GC content = 0.58. zero-shot LLM = 0.41. Well motivated baselines are important. I will keep harping on this forever! 1/
Another quick note. One of the (ex-) students in the lab quickly tested how promoter GC content (% G/Cs) correlates with expression in the benchmark dataset. GC content = 0.58. zero-shot LLM = 0.41. Well motivated baselines are important. I will keep harping on this forever! 1/
Anshul Kundaje (anshu.. @anshulkundaje
22K Followers 2K Following Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU). Post: @anshulkundaje, Threads: anshulkundaje
Mo Lotfollahi @mo_lotfollahi
7K Followers 1K Following I train neural networks and dogs to do cool things! ML for biology and drug discovery| Faculty @sangerinstitute.
Dinghuai Zhang 张鼎.. @zdhnarsil
2K Followers 1K Following PhD student at @Mila_Quebec. Ex intern at FAIR Labs @MetaAI. Previous math undergraduate at @PKU1898.
Jacob Schreiber @jmschreiber91
4K Followers 1K Following Post-doc @StanfordMed, studying genomics, machine learning, and fruit. Editor @StanfordAILab Blog, @JOSS_TheOJ. My code is like our genomes: most of it is junk.
Kevin K. Yang 楊凱�.. @KevinKaichuang
16K Followers 5K Following Senior Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
Sergey Ovchinnikov �.. @sokrypton
12K Followers 3K Following Scientist, Assistant Professor @MITBiology, #FirstGen, ProteinBERTologist
Lana Garmire 🌶 @GarmireGroup
5K Followers 3K Following Asso. Prof. of Univ Michigan. multiomic. EMR. informatics. womenhealth.#mom of 2. PECASE awardee. Fellow AIMBE. DEI ✊. learn painting. Opion's my own.
Luciano Martelotto �.. @LGMartelotto
10K Followers 954 Following Sc/St-Omics pro-aficionado. Knowledge sharing is my thing. Views, opinions and comments are my own and do not represent those of my employer. Like/RT ≠ endorse
Vitalii Kleshchevniko.. @vitaliikl
2K Followers 1K Following Researcher @bayraktar_lab @StatGenomics @teichlab @sangerinstitute | Physics & AI to study cells, cell circuits & brains 🧠 | #SingleCell+spatial | 🌍🇺🇦to🇬🇧
Patrick Hsu @pdhsu
30K Followers 3K Following co-founder @ArcInstitute, @BerkeleyBioE professor | researcher & investor in genome editing, biotech, AI | 🇨🇦 @harvard @broadinstitute @editasmed, Fast Grants
evo-devo @Xiaojie_Qiu
3K Followers 2K Following Assistant Prof. @ Stanford BASE, Genetics & Computer Science (courtesy). Lead the predictive biology lab of ML & single cell/spatial genomics, focus on heart
Yiping Lu @2prime_PKU
3K Followers 2K Following Kernel, ML for PDE, Robust learning,non-parametric stats/🌈/PKU👉Stanford👉NYU Courant👉Northwestern IEMS/ Previous Intern @RIKEN_AIP
Sheng Wang @wangshengpkucn
734 Followers 646 Following Assistant Professor CSE@University of Washington. Computational biomedicine and bioNLP.
Allen School @uwcse
10K Followers 3K Following The Paul G. Allen School of Computer Science & Engineering educates tomorrow's innovators while developing solutions to humanity's greatest challenges.
Peter Koo @pkoo562
1K Followers 677 Following Assistant Professor @CSHL, advancing deep learning for genomics
Yuanqi Du @YuanqiD
2K Followers 957 Following Passionate researcher and community builder @AI_for_Science @LogConference; CS PhD @Cornell; Prev @DeepModeling, @AmlabUva, @MSFTResearch
Weijia Shi @WeijiaShi2
5K Followers 965 Following PhD student @uwcse @uwnlp | Visiting Researcher @MetaAI | Undergrad @CS_UCLA | https://t.co/eLBQmgkvym
Ken Wang @KenWang89437252
347 Followers 196 Following Computational Biology, Statistical Mechanism/Machine learning, Single Cell Sequencing, multi-mode integration, PhD student in @fabian_theis lab
Michael Love @mikelove
18K Followers 5K Following I'm not on twitter anymore, find my on Bluesky or Mastodon
Arif Ahmad @ArifAhm92263086
227 Followers 7K Following All things AI, Computer Science and Circuits! Prev. @GoogleAI
Taichi Matsubara, Ph... @meme_tttmmm
1K Followers 2K Following Research Scientist ( Quantum AI & DNA language model ) Ph.D. student in Kyushu University 最新技術に関する記事も執筆しています👇
Julia Zeitlinger (@jz.. @JuliaZeitlinger
2K Followers 607 Following Investigator at the Stowers Institute for Medical Research, interested in regulatory genomics in development and evolution.
Koushik @koushik_here
711 Followers 5K Following Machine Learning for biology | Deep Learning Data Scientist @Bayer4Crops | Prev: PhD @IowaStateU | he/him
Medical Laboratory Ge.. @labgenehub
1K Followers 2K Following 🧬 Clinical vignettes to sharpen your medical genetic diagnostic skills - great for exam prep (such as ABMGG, ABGC) and continuing certification. 🩺
Steve Silverman @asymtmm
2K Followers 2K Following Merck Process R&D Chemist. Division of Organic Chemistry Councilor and Past Program Chair, National Organic Symposium 2023 Co-Chair (he/him)
Ethan Tse @etse12
4 Followers 156 Following PhD Student in Physiology, Biophysics, and Systems Biology at Weill Cornell Medicine
JUNXI FENG @Severus_SnoWalk
14 Followers 157 Following Unraveling regulatory genomics 🧬 variant to functions 🥸 Master student at HSPH
Peinan Hu @HuPeinan
23 Followers 129 Following PhD Candidate in CWRU, gene regulation, genome architecture.
Dedong Xie @DedongX
43 Followers 121 Following
Chanwoo Kim @ChanwooKim_
77 Followers 159 Following Ph.D. student @uwcse working on biomedicine and machine learning
Martin Fan @perfectoid_ai
393 Followers 8K Following
Lixia Yi @LixiaY27058
9 Followers 104 Following 🔬Interested in cancer epigenetics & immunology. DO COOL SCIENCE☕️🧬
Rui Yang @RuiYang53922541
219 Followers 379 Following PhD student in Computational Biology | 3D Genomics | Leslie Lab
AccML.Bio Workshop @ .. @AccMLBio
19 Followers 81 Following Workshop at ICML'24, with a focus on bridging the accessibility gap between ML and Biology. Call for Papers out now at https://t.co/jUZtxzkA2A
Chuang Gan @gan_chuang
4K Followers 446 Following Faculty Member at UMass Amherst; Principal researcher at MIT-IBM Watson AI Lab; Homepage: https://t.co/oXP6pqXCpo
Jichen Wen @JichenWen0725
37 Followers 528 Following PhD Student at Beijing Institute of Genomics, University of Chinese Academy of Sciences; Member of WangLab @wallacemwang.
Hirak Sarkar @hirak@g.. @hrksrkr
644 Followers 914 Following Ludwig Scholar at Ludwig Princeton Branch and CINJ | Ph.D. with @nomad421 at UMD CBCB, Computational Biology, Machine Learning. @[email protected]
bluebabubear @bluebabubear
84 Followers 759 Following
Seyoon Lee @Seyoon_L
100 Followers 574 Following PhD. Candidate | Seoul National University ‘19~| University of Pennsylvania ~’18 | Berkshire School ~’12 | Bioinformatics | Single Cell Analysis | ASC Organoids
Patrick Yu @PatrickYu69606
6 Followers 29 Following Machine Learning and Computational Biology PhD student @uwcse, previously undergrad @IllinoisCS
Martin @martin_kim0
123 Followers 265 Following Research engineer @YosefLab | UC Berkeley | Deep learning & biology
Huangyuan @Huangyu58589918
65 Followers 340 Following Ph. D in Computer Science at Harvard University Google Scholar: https://t.co/k2ACbnIVnf
Feng Aaron @FengAaronZY
31 Followers 63 Following Tsinghua CS PhD Candidates Intern in Microsoft Research Asia
Xin Liu @XinLiu918
18 Followers 152 Following
Kenji Kamimoto @kenjikamimoto68
315 Followers 239 Following Senior scientist in @morris_lab Washington University St.Louis | Developmental Genetics, Single cell biology, Machine learning and Systems biology
Craig Glastonbury @C_Glastonbury
2K Followers 1K Following Research Group Leader @humantechnopole. ex-advisor & ex-Lead ML Researcher @benevolent_ai. Honorary Research Fellow in ML at the University of Oxford. 🏳️🌈
maplecai @maplinecai
0 Followers 60 Following
Nathan Lévy @nathan_levyy
90 Followers 279 Following ML & Spatial Omics | PhD student @YosefLab | @ENS_ParisSaclay alum
Romano @____romano____
194 Followers 660 Following Praise the Lord and pass the ammunition. God wants you to go to war.
Sleshashesh @sleshashes52096
62 Followers 452 Following
Bryce @Bryce03225355
76 Followers 666 Following
dtavjk @bobdylanshoes
0 Followers 54 Following
Jun Zhu @shanWan928516
3 Followers 48 Following PhD candidate @Tsinghua_Uni. Focusing on computational biology and deep learning.
Shiyu Jiang @shiyu_jiang23
33 Followers 317 Following Research @MedicineUVA @UVACPHG | Alum. @JohnsHopkins @KeanUniversity | Computational Biology and AI4Science
Xinyu Ling @Dennislxy
165 Followers 518 Following From Chemical biology to Genetics, JCC Postdoctoral Fellow in Broad Institute of Harvard and MIT @BoXia7 lab
Bob Smith @BobSmith913172
28 Followers 396 Following
Xufeng Chen @xfchen0912
6 Followers 104 Following
Oscar L Olvera Astivi.. @oscar_olvera100
2K Followers 349 Following PhD in Psychometrics. Assistant Prof @UW in Measurement & Statistics. R enthusiast. ❤️Maths & Stats❤️. From 🇨🇦 originally. He/His/Him. 🏳️🌈
C @euniverrse
76 Followers 2K Following
نور الدين م�.. @NURUD_DEN
66 Followers 3K Following #Mechanical_Engineering #Data_Science صَعْبُ الكريهةِ لا يُرامُ جنابُهُ ***** ماضي العزيمةِ كالحُسَامِ المِقْصَلِ
Anshul Kundaje (anshu.. @anshulkundaje
22K Followers 2K Following Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU). Post: @anshulkundaje, Threads: anshulkundaje
Fabian Theis @fabian_theis
29K Followers 446 Following Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Yann LeCun @ylecun
710K Followers 718 Following Professor at NYU. Chief AI Scientist at Meta. Researcher in AI, Machine Learning, Robotics, etc. ACM Turing Award Laureate.
Rong Fan @RongFan8
9K Followers 1K Following Harold Hodgkinson Professor of Biomedical Engineering and Pathology, Yale University https://t.co/kLH8WPg2c2 https://t.co/kbDKoBh9Ak https://t.co/MduFkomdDj
Mo Lotfollahi @mo_lotfollahi
7K Followers 1K Following I train neural networks and dogs to do cool things! ML for biology and drug discovery| Faculty @sangerinstitute.
Itai Yanai 💔 @ItaiYanai
24K Followers 2K Following Professor at the NYU School of Medicine. Co-host of the 'Night Science Podcast' https://t.co/Sy1rcWXGLz @nightsciencepod
Jian Ma @jmuiuc
7K Followers 1K Following Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science @CMUCompBio @SCSatCMU @CarnegieMellon
Dinghuai Zhang 张鼎.. @zdhnarsil
2K Followers 1K Following PhD student at @Mila_Quebec. Ex intern at FAIR Labs @MetaAI. Previous math undergraduate at @PKU1898.
Jacob Schreiber @jmschreiber91
4K Followers 1K Following Post-doc @StanfordMed, studying genomics, machine learning, and fruit. Editor @StanfordAILab Blog, @JOSS_TheOJ. My code is like our genomes: most of it is junk.
MIT CSAIL @MIT_CSAIL
298K Followers 22K Following MIT's Computer Science & Artificial Intelligence Laboratory (CSAIL). Media Inquiries: [email protected]
James Zou @james_y_zou
10K Followers 59 Following @Stanford professor. Chan-Zuckerberg investigator. Sloan Fellow. AI for biotech + health. Making AI more trustworthy, reliable and human compatible.
dana_peer @dana_peer
13K Followers 164 Following
Nature Biotechnology @NatureBiotech
302K Followers 2K Following Publishing the very best of biotech science and business. Part of @SpringerNature and @NaturePortfolio. On Facebook (natbiotechnol) & IG (nature.biotechnology)
Jay Shendure @JShendure
14K Followers 331 Following Genomics technology developer. Developmental biology adult learner. Professor at @uwgenome @HHMINEWS @BrotmanBaty. He/him.
Stephen Ra @stephenrra
3K Followers 494 Following Director & Founding Team @PrescientDesign • @genentech Prev: Head of ML @Pfizer, @Columbia, @Cornell
Kevin K. Yang 楊凱�.. @KevinKaichuang
16K Followers 5K Following Senior Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
Rahul Satija @satijalab
28K Followers 380 Following Core Member, New York Genome Center; Associate Professor, Biology, NYU
Sergey Ovchinnikov �.. @sokrypton
12K Followers 3K Following Scientist, Assistant Professor @MITBiology, #FirstGen, ProteinBERTologist
Lana Garmire 🌶 @GarmireGroup
5K Followers 3K Following Asso. Prof. of Univ Michigan. multiomic. EMR. informatics. womenhealth.#mom of 2. PECASE awardee. Fellow AIMBE. DEI ✊. learn painting. Opion's my own.
Steve Silverman @asymtmm
2K Followers 2K Following Merck Process R&D Chemist. Division of Organic Chemistry Councilor and Past Program Chair, National Organic Symposium 2023 Co-Chair (he/him)
Chanwoo Kim @ChanwooKim_
77 Followers 159 Following Ph.D. student @uwcse working on biomedicine and machine learning
Rui Yang @RuiYang53922541
219 Followers 379 Following PhD student in Computational Biology | 3D Genomics | Leslie Lab
Martin @martin_kim0
123 Followers 265 Following Research engineer @YosefLab | UC Berkeley | Deep learning & biology
Kenji Kamimoto @kenjikamimoto68
315 Followers 239 Following Senior scientist in @morris_lab Washington University St.Louis | Developmental Genetics, Single cell biology, Machine learning and Systems biology
Craig Glastonbury @C_Glastonbury
2K Followers 1K Following Research Group Leader @humantechnopole. ex-advisor & ex-Lead ML Researcher @benevolent_ai. Honorary Research Fellow in ML at the University of Oxford. 🏳️🌈
Nathan Lévy @nathan_levyy
92 Followers 279 Following ML & Spatial Omics | PhD student @YosefLab | @ENS_ParisSaclay alum
Bonnie Berger Lab @lab_berger
2K Followers 16 Following The Berger lab at @MIT_CSAIL works on a diverse set of problems in computational biology and biomedicine. Account run by lab members.
Oscar L Olvera Astivi.. @oscar_olvera100
2K Followers 349 Following PhD in Psychometrics. Assistant Prof @UW in Measurement & Statistics. R enthusiast. ❤️Maths & Stats❤️. From 🇨🇦 originally. He/His/Him. 🏳️🌈
Harvard Data Science .. @TheHDSR
5K Followers 273 Following The open access platform of @harvard_data, HDSR is a global forum on everything data science and data science for everyone.
Yichun He @yiyiyihe
137 Followers 629 Following Ph.D. student at Harvard @hseas and Broad Institute @broadinstitute. B.E. at USTC.
Chris Lin @chrislin97
65 Followers 50 Following PhD student @uwcse. Previously @ucberkeley and @stanford.
Mehmet Saygın Seyfio.. @mehsaygin
803 Followers 753 Following Ph.D. candidate at @UW, working on medical AI at the intersection of vision and language. Previously 4x Research Intern @AmazonScience.
Michael Montgomery @MichaelTMont
250 Followers 304 Following #firstgen PhD Candidate in the @jengreitz Lab @StanfordMed. Passionate about dissecting and reprogramming cell type-specific gene regulation.
Carl de Boer @CarldeBoerPhD
2K Followers 922 Following Assistant professor @BME_UBC studying eukaryotic gene regulation (cis-regulatory logic); amateur mycologist; parent; he/him/his @[email protected]
Bingbing Wen @bingbingwen1
131 Followers 375 Following PhD student @UW_iSchool LLMs in expertise domain, multi-modality | prev intern @MSFTResearch | #NLProc
Puheng Li @lphLeo623
104 Followers 125 Following PhD student @Stanford Statistics. Former undergrad @PKU1898. Former intern @MSFTResearch.
Xin Ge @Xin_Ge_
187 Followers 381 Following Final yr PhD @BabrahamInst in the Linterman lab studying ageing in the germinal centre. 💜science,💜music. Founder and president of @camls_official.
Nature Reviews Geneti.. @NatureRevGenet
92K Followers 225 Following Publishing reviews and commentaries across the fields of genetics and genomics. Part of @SpringerNature and @NaturePortfolio. Tweets are from the editors.
Qian Cheng @sgqcheng
406 Followers 557 Following Scientific Editor @NatureComms. #ComputationalBiology. PhD @Cambridge_Uni. Views my own.
Patrick Hsu @pdhsu
30K Followers 3K Following co-founder @ArcInstitute, @BerkeleyBioE professor | researcher & investor in genome editing, biotech, AI | 🇨🇦 @harvard @broadinstitute @editasmed, Fast Grants
Haotian Ye @haotian_yeee
93 Followers 79 Following CS PhD at @Stanford | BS at Yuanpei College, @PKU1898. Working on AI for Science | Generative AI
Zhengzhong Tu @_vztu
3K Followers 2K Following AI Researcher @GoogleAI | PhD @UTAustin | BS @FudanUni | Intern @GoogleAI | Computer Vision, GenAI | Opinions are my own
Ryan L. Keivanfar @RyantheShark
357 Followers 1K Following PhD-ing @UCBerkeley + @GladstoneInst Ioannidis + Pollard Labs • ML + biology Likely drinking coffee and/or dancing
Ran Xu @ritaranx
180 Followers 113 Following CS PhD student @EmoryUniversity | Graph Learning, NLP, LLM
Zijie Huang@Neurips20.. @HuangZi71008374
483 Followers 419 Following CS PhD @UCLA; Research Intern @Amazon @Netflix; Work on #AI4Science, #GNN, #KnowledgeGraph, #DynamicalSystem, #NeuralODE. I am on job market for year 2023-2024.
Jimmie Ye @yimmieg
3K Followers 171 Following Professor @ UCSF, Genomicist, Geneticist, Adopted Immunologist, #GirlDad, Immigrant
Kang Jin @Kang_Jin__
264 Followers 626 Following Postdoc with Xiaowei Zhuang; spatial transcriptomics and computational biology ; former Ph.D student of @brucearonow
Mahtab Bigverdi @MahtabBg
82 Followers 240 Following Computer Science PhD student @uwcse| Prev-Research intern @Genentech
Shuiwang Ji @ShuiwangJi
3K Followers 3K Following Machine Learning, AI for Science, Professor and Presidential Impact Fellow, Texas A&M University Fellow, IEEE and AIMBE
Susan Zhang @suchenzang
20K Followers 504 Following @ Google Deepmind. Past: @MetaAI, @OpenAI, @unitygames, @losalamosnatlab, @Princeton etc. Always hungry for compute.
Teng Gao @tGaoTeng
1K Followers 3K Following Biomedical informatics 🧬 PhD student @harvardmed + @altos_labs. Solving problems in cancer and aging using single-cell genomics
Melih Yilmaz @melih__yilmaz
178 Followers 169 Following CS PhD student with @thabangh and @sewoong79 at @UWCSE | ML, CompBio, Proteomics | @NucleateHQ Seattle
Alexis Conneau @alex_conneau
24K Followers 111 Following Audio AGI Research Lead @OpenAI - GPT-Next - Past: XLM, Unsupervised ASR, Unsupervised MT, Wav2vec 2.0/XLSR, MUSE, Unsupervised cross-lingual transfer
Ping Lu @sunshine_lp0
27 Followers 110 Following Peking University, Fuchou Tang lab. Single-cell multi-omics, RNA biology, cancer biology, bioinformatics
Daniel Weld @dsweld
3K Followers 264 Following Computer science prof & entrepreneur. Excited by crowdsourcing, computational/social systems, MOOCs, relation extraction and Web-scale NLP.
Yuheng Fu @cadyyuheng
176 Followers 379 Following PhD Student @Yi_Lab_NU @Rosemary_Braun CompBio Enthusiast @NUFeinbergMed Previously @morris_lab @WUSTLMed
Manu Saraswat @manusaraswat10
695 Followers 2K Following PhD candidate at Stegle and Mall lab; interested in Machine Learning and 🧬 Previously @genentech , @UBC and @bitspilanigoa (he/him)
Yao Fu @Francis_YAO_
13K Followers 2K Following PhD @EdinburghNLP on LLMs and Machine Reasoning. Ex. @Columbia @PKU1898 @MITIBMLab @allen_ai AGI has yet to come, so keep running
Xiaochuang Han @XiaochuangHan
445 Followers 683 Following PhD student at the University of Washington
Yue Guo @YueGuo10
85 Followers 77 Following Health Informatics PhD student at @UW BIME. Medical NLP. Currently intern @allen_ai. Formerly @google, @MSFTResearch, @JohnsHopkinsSPH
Dmitry Petrov @FullStackML
2K Followers 490 Following Creator of @DVCorg - Data Version Control - who became a startup founder. Ex-Data Scientist @Microsoft. PhD in CS. Telling jokes with a poker face.
Anastasios Nikolas An.. @ml_angelopoulos
3K Followers 782 Following @Berkeley_EECS Ph.D. with Mike Jordan/Jitendra Malik. Conformal prediction, distribution-free uncertainty quantification, vision/imaging. Former @stanford_ee.
Alfonso Martinez Aria.. @AMartinezArias
9K Followers 890 Following Born and bred in Madrid, brewed in Chicago and Cambridge. Curious about how cells build embryos #NotIntheGenes #InNumbersWeTrust@TuXinming This topic? Models that use DNA sequence as a predictor? Models that use DNA sequence as the only information about DNA regions? (You can also use DNA sequences + “genomic track” as predictors - which would be a quite different task)
@TuXinming @jmschreiber91 @CarldeBoerPhD @KlieAdam @Avsecz @gagneurlab @JuliaZeitlinger @steinaerts Some other suggestions rgNN (pronounced Reagan): regulatory genomics neural network dragoNN (pronounced dragon): deep regulatory genomics neural networks
@TuXinming @anshulkundaje @CarldeBoerPhD @KlieAdam @Avsecz @gagneurlab @JuliaZeitlinger @steinaerts "Function" has a history of people argue over the precise meaning, the models don't *have* to be deep or supervised though they usually are, "deep genomic model" is pretty vague.
You've probably seen attribution tracks where the height of each letter is its "importance" to a predictive model and motifs pop out. But the technical details behind how these are calculated can matter a lot -- and I'm worried many may be done incorrectly. 1/
🎉 Congratulations to everyone who made the list! 🎉 @UW @UWcse washington.edu/news/2024/04/2…
@TuXinming Thank you for your message! That's great to hear!
Two new chapters from my open-access textbook in human population genetics are now online: - Population structure: I. Ancestry estimation - Population structure: II. More about admixture web.stanford.edu/group/pritchar…
I'm delighted to release the first half of my new open-access online textbook in human population genetics: web.stanford.edu/group/pritchar…
Thrilled to announce our dermatology image-text foundation model is now published in @NatureMedicine. Honored to collaborate with incredible @uwcse students -@ChanwooKim_, @soham_gadgil, and Alex DeGrave -and Stanford's stellar team led by my co-senior author @RoxanaDaneshjou.👇
Excited to see our @NatureMedicine paper out today led by @ChanwooKim_ with my co-senior author @suinleelab and an amazing team! We used a dermatology foundation model to enable explainable and transparent AI - from auditing datasets to models. nature.com/articles/s4159…
Joins us for Machine Learning in Computational Biology (MLCB) 2024 mlcb.github.io Submission deadline: June 15 Conference dates: Sept 5 & 6
Thrilled to announce our dermatology image-text foundation model is now published in @NatureMedicine. Honored to collaborate with incredible @uwcse students - @ChanwooKim_, @soham_gadgil, and Alex DeGrave -and Stanford's stellar team led by my co-senior author @RoxanaDaneshjou.👇
Happy to share that our paper on leveraging foundation models to foster the explainability and transparency of medical AI has been published today in @NatureMedicine! Check it out here: nature.com/articles/s4159…
Happy to share that our paper on leveraging foundation models to foster the explainability and transparency of medical AI has been published today in @NatureMedicine! Check it out here: nature.com/articles/s4159…
The last piece of my Ph.D. work (10+ years back) is finally online in the Journal of the American Statistical Association. We generalized Pearson correlation squares and developed the K-lines clustering algorithm to find line clusters in a 2D scatterplot: tandfonline.com/doi/full/10.10…
I am always impressed by the paper quality our workshop receives every year. Being a workshop reviewer/AC can expose you to the frontier of the field (fresh new papers, prelim. results, short but niche ideas)! The review loads are not high either (~2/5 papers for reviewers/ACs).
📢📢📢 Participate in the workshop and community activity as a Reviewer or Area Chair! (Note you don't have to be super senior to be an area chair, as long as you know one subarea well!) Call for Reviewers: forms.gle/WKBJC73xGKpv6A… Call for Area Chairs: forms.gle/vxMghgeWoFNhSx…
Our LiMCA paper has been published in Nature Methods! Congratulations to my co-authors @JiankunZhang21, @jianfcpku, and @tanlongzhi. Thanks to all the reviewers for their invaluable suggestions, which greatly enhanced the quality and clarity of our work. nature.com/articles/s4159…
I'm thrilled to introduce our latest technique—LiMCA (Linking mRNA to Chromatin Architecture (LiMCA)), from Sunney's lab @XieSunney, which simultaneously profiles 3D genome and transcriptome with the same cell. Preprint: researchsquare.com/article/rs-321…
做了一点微小的贡献🀄️
Our new GPT-4 Turbo is now available to paid ChatGPT users. We’ve improved capabilities in writing, math, logical reasoning, and coding. Source: github.com/openai/simple-…
It's been a while since I've transited from #University's Research Position to #Industry's Research Position. Here is what I learned and Pros & Cons: Pros: - ⛏️In most of the time, Industry will provide more computational resource than than Academic Lab, and that will give you a…
Our work on studying chromatin context-dependent regulation of prime editing is officially out on @CELL. cell.com/cell/fulltext/…
My first paper in aging research! The beginning of a journey dedicated to unlocking the mysteries of aging. Eager to delve deeper and contribute more fantastic research to this fascinating field with @suinleelab news-medical.net/news/20231109/…
I have officially passed my doctoral dissertation defense and become Dr. Cui! 🎓 I couldn't have made it this far without the help and support of so many people along the way. I'm deeply grateful to my advisor Prof. Yang @yangji9181 and my committee members, Prof. Wang…
🎓 A personal update: I graduated from UCSD @McAuleyLabUCSD and have started my new journey building LLMs at Boson.ai. I'd like to thank all my friends for your help and support. This is an era of wonder—stay tuned for what's next.
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