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Pytest for Beginners testdriven.io/blog/pytest-fo… This article looks at the very basics of using pytest for testing Python code. by @GirlLovesToCode #Python #pytest @pytestdotorg
Python Data Visualization, Where To Start? #python talkpython.fm/episodes/show/…
We've released an Azimuth API that lets you process, map, and annotate your scRNA-seq dataset with a single R command. Just needs the raw counts matrix as input, and accepts Seurat objects, AnnData (h5ad), or hdf5 files. Check out the vignette at: satijalab.github.io/azimuth/articl…
for reference-based cell annotation, I was using Seurat V4. seeking a more scalable solution. this github.com/scverse/scvi-t… ? @adamgayoso
To put in comparison the @ElemBio AVITI with the Illumina NextSeq machines, here is a table showing the different kits. Notice in yellow the price per Gb, which is much cheaper for AVITI compared to NextSeq platforms.
To put in comparison the @ElemBio AVITI with the Illumina NextSeq machines, here is a table showing the different kits. Notice in yellow the price per Gb, which is much cheaper for AVITI compared to NextSeq platforms. https://t.co/BGjU2UwH9f
We have some very exciting announcements for our single-cell solution today and tomorrow at the @FoGenomics 2022! Tune in or watch this space for more info later!
#PressRelease: The news of Scipio’s product launch is out! The release of our Asteria© single-cell benchtop kit and Cytonaut© software has been picked up by BioSpace: bit.ly/3IU5iad and GenomeWeb: bit.ly/3udDdql #singlecell #productlaunch #FoG2022
BREAKING NEWS! Today our CEO Pierre Walrafen announced at #FoG2022 the launch of our new single-cell RNA-seq integrated solution, featuring the Asteria© single-cell RNA-seq benchtop kit and the Cytonaut© analysis software suite! More info on our website: scipio.bio/products/singl…
📢Scipio bioscience will attend the Festival of Genomics & Biodata in London on January 26-28th. CEO Pierre Walrafen will demonstrate how, thanks to the Asteria© technology, the world of genomics is about to enter a new era of instrument-free, ready-to-use scRNA-seq! #singlecell
J'ai bravé les Enfers pour voir comment une fake news se répandait parmi les #GigaCervö, mais aussi sur les canaux de France Soir, bonsens.info et autres reinfocovid.fr en partant d'un magnifique post Telegram de Silvano Trotta. 🔗t.me/trottasilvano/… 1/13
#BingleSeq puts some of the best reviewed and most widely used packages and tools for #RNASeq analyses at the fingertips of #biologists with no programing experience. - @UofGlasgow rna-seqblog.com/bingleseq-a-us…
I just learned about second-generation p-values, by @StatEvidence. They make conceptually more sense as they take into account that the null has an interval too. That there is a difference between null and practically null. 1/ h/t @f2harrell tandfonline.com/doi/full/10.10…
The end of manual gating - Single-cell classification using learned phenotypes. New tool from Yang Chen in our team: biorxiv.org/content/10.110… code here: github.com/Brodinlab/cell…
Illumina Acquires French Genomic Data-Compression Startup Enancio #NGS #genomics genomeweb.com/business-news/…
A complete revue of long reads including single cell sequencing in: #scRNAseq Methodologies for transcript profiling using long-read technologies rna-seqblog.com/methodologies-… via @@RNASeqBlog
Comparison of high-throughput single-cell RNA sequencing data processing pipelines rna-seqblog.com/comparison-of-… via @@RNASeqBlog
Check out the latest version of the @XShirleyLiu lab's MAESTRO pipeline! It's a comprehensive single-cell RNA-seq and ATAC-seq analysis suit built using #snakemake: github.com/liulab-dfci/MA….
Check out the latest version of the @XShirleyLiu lab's MAESTRO pipeline! It's a comprehensive single-cell RNA-seq and ATAC-seq analysis suit built using #snakemake: github.com/liulab-dfci/MA….
✍️📊 "The Evolution of a ggplot (Ep. 1) • Cédric Scherer" 👤 Cédric Scherer @CedScherer cedricscherer.netlify.app/2019/05/17/the… #rstats
Dynamic changes in intron retention are tightly associated with regulation of splicing factors and proliferative activity during B-cell development academic.oup.com/nar/advance-ar…
The Lonely Pipette @LonelyPipette
6K Followers 5K Following Research scientists are all lonely pipettes but it doesn't mean they are alone. A podcast where scientists share tips to help you do better science.
Jonathan Weitzman @Epigenetique
7K Followers 7K Following Teaching (@EURGENEPARIS) and researching (@ParisEpigenetix) genetics and epigenetics at @Univ_Paris and podcasting @LonelyPipette
WhiteLab Genomics @WhitelabG
214 Followers 113 Following AI for Gene & Cell Therapy - We develop the next generation digital tools to help gene & cell therapy companies develop cheaper drugs faster.
Roberta Codato @robic90
65 Followers 126 Following
Andrew Oldfield @serialChIPer
337 Followers 261 Following Biologist interested in ''Epigenetics'', ''Pioneer factors'' and Distal Regulatory Elements
RNA-Seq Blog @RNASeqBlog
9K Followers 5K Following Transcriptome Sequencing Research & Industry News
bestessayhomework @bestessayhomew1
210 Followers 4K Following
Antoine Bridier-Nahmi.. @Bridier_Nahmias
121 Followers 157 Following Associate Professor at Université de Paris Med. School. Genomics and Biochemistry.
Oli•K {🧬~💻} @vOilierhrisK
118 Followers 248 Following "Ceci n'est pas un | " #Bioinformatics #Epigenomics #Stats #R #Bash #hpc #UniversitéParisCité #Teaching Ailleurs le ciel est plus bleu!
Simona Cristea @simocristea
7K Followers 496 Following Head of Data Science at Hale Center for Pancreatic Cancer | Group leader @DanaFarber @Harvard | We ❤️ genomics, evolution & LLMs | PhD @eth | 🇷🇴🇸🇪🇨🇭🇺🇸
CZI Science @cziscience
27K Followers 573 Following Supporting the science and technology that will make it possible to cure, prevent, or manage all disease by the end of the century.
Terrible Maps @TerribleMaps
1.8M Followers 1K Following The home of terrible maps with a pinch of humour [email protected]
Ming "Tommy" Tang @tangming2005
30K Followers 2K Following Director of computational biology. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Funny Cats Videos @CatsVideosDaily
26K Followers 2K Following Funny cats videos and kittens videos which makes you smile. I am also posting funny cats gifs and images. #CatsOfTwitter #cats #kittens #catoftheday #caturday
Sketching Science @sketchscience
29K Followers 2K Following Science, Memes, Art, and Internet. Created by @neto_flames
Alex Menn @_AlexMenn
334K Followers 2K Following Partner at Begin Capital, VC, angel investor, and entrepreneur
Fitness On Fire 🔥 @fitnessonfire01
187K Followers 8 Following
Artificial Volume Stu.. @studios_volume
271 Followers 11 Following it's mostly about Lego Stop Motion animation Subscribe YT for more!
Rahul Satija @satijalab
28K Followers 380 Following Core Member, New York Genome Center; Associate Professor, Biology, NYU
Nextflow @nextflowio
5K Followers 30 Following The leading open source orchestrator for containerized, data-intensive pipelines on any infrastructure at any scale.
Genome Reference @GenomeRef
3K Followers 5 Following The Genome Reference Consortium: Human, Mouse, Rat, Zebrafish and Chicken reference assemblies!
Claudia Racioppi, Ph... @RacioppiClaudia
339 Followers 693 Following Developmental Biologist, Scientist at Regeneron
The Lonely Pipette @LonelyPipette
6K Followers 5K Following Research scientists are all lonely pipettes but it doesn't mean they are alone. A podcast where scientists share tips to help you do better science.
🔎Julia Evans🔍 @b0rk
209K Followers 641 Following programming and exclamation marks. she/her. zines at https://t.co/Rl14X28NuU. mostly posting on Mastodon at https://t.co/HTBbL2lnZr
DavidDelBourgo @DavidDelBourgo
314 Followers 1K Following CEO & co-founder @WhiteLabG #machinelearning for #gene #cell #therapy #editing 20 y in #biotech #healthcare #innovation @chicagobooth @utcompiegne
WhiteLab Genomics @WhitelabG
214 Followers 113 Following AI for Gene & Cell Therapy - We develop the next generation digital tools to help gene & cell therapy companies develop cheaper drugs faster.
Huret Christophe @Huret_C
160 Followers 79 Following Vectorology Platform manager- Paris University. Rougeulle lab manager. Responsable Pôle développement Scouts et Guides de France (Territoire du Val d'Oise).
Andrew Oldfield @serialChIPer
337 Followers 261 Following Biologist interested in ''Epigenetics'', ''Pioneer factors'' and Distal Regulatory Elements
Roberta Codato @robic90
65 Followers 126 Following
Jonathan Weitzman @Epigenetique
7K Followers 7K Following Teaching (@EURGENEPARIS) and researching (@ParisEpigenetix) genetics and epigenetics at @Univ_Paris and podcasting @LonelyPipette
Antoine Bridier-Nahmi.. @Bridier_Nahmias
121 Followers 157 Following Associate Professor at Université de Paris Med. School. Genomics and Biochemistry.
David Wiley @opencontent
13K Followers 496 Following CAO @LumenLearning. #StudentSuccess, #InstructionalDesign, #AI, #Open, #DataScience, #SocialEntrepreneurship, #Music. WV8O on #AmateurRadio
RNA @RNAJournal
7K Followers 609 Following The official journal of the RNA Society. Featuring cutting edge research in RNA Biology, biochemistry, genetics, cell biology, structural biology and genomics
RNA Biology @RNABiology
472 Followers 4 Following RNA Biology serves as a forum for current thinking on RNA, from coding and noncoding to therapeutic strategies based on that still very magic molecule.
Nucleic Acids Res @NAR_Open
10K Followers 2K Following NAR is an open access journal publishing the latest in nucleic acids research. An Oxford University Press journal.
The RNA Institute @TheRNAInstitute
5K Followers 422 Following Training the next generation of RNA researchers in basic and translational science
lncRNApapers @lncRNA_papers
2K Followers 61 Following Bringing you the latest in #lncRNA scientific literature. Mention for retweet. #lincRNA #lncRNA #longnoncodingRNA #RNA #biochem #pubmed #science
RNA-Seq Blog @RNASeqBlog
9K Followers 5K Following Transcriptome Sequencing Research & Industry News
Miguel Casanova @milcs40
187 Followers 299 Following Molecular Biologist with a strong interest in pluripotency and the role repeat elements and non-coding RNAs play in this context. Electric guitar aficionado.
Epigenetics Literacy @EpigeneLiteracy
397 Followers 37 Following Communicating epigenetics to public, scientists, and media. Sister site to @geneticliteracy and @GeneticExperts
Epigenetics News @Epigenetics
5K Followers 167 Following Track the latest #Epigenetics news, research, clinical trials, companies and reports. Continuously updated from 500+ news, research publications. BioPortfolio
INSTITUT PASTEUR @institutpasteur
68K Followers 2K Following L’Institut Pasteur est un leader de la recherche biomédicale depuis plus de 130 ans. The Institut Pasteur is a leading global biomedical research institute.
Stéphane Le Crom @slecrom
652 Followers 105 Following Professor in #Genomics @Sorbonne_Univ_. Interested in omics, core facilities management, bioinformatics and time organization methods.
Oli•K {🧬~💻} @vOilierhrisK
118 Followers 248 Following "Ceci n'est pas un | " #Bioinformatics #Epigenomics #Stats #R #Bash #hpc #UniversitéParisCité #Teaching Ailleurs le ciel est plus bleu!
CNRS Biologie @CNRSbiologie
18K Followers 729 Following CNRS Biologie : 160 #laboratoires et 19 300 personnels de #recherche pour décrypter la complexité et la diversité du #vivant Anciennement @INSB_CNRS
Institut Curie @institut_curie
34K Followers 2K Following 🔬 1er centre de recherche et de lutte contre le cancer en France 🇫🇷
Université Paris Cit.. @univ_paris_cite
33K Followers 1K Following Compte officiel. Université Paris Cité, Illuminons le monde de demain. #EnlightenTheFuture #IlluminonsLeMondeDeDemain ✨
EMBL-EBI @emblebi
74K Followers 598 Following EMBL-EBI provides open biological data resources and tools, and performs basic research in computational biology. https://t.co/ax5VumVAyg
Simply Statistics @simplystats
63K Followers 284 Following Simply Statistics blog by Jeff Leek, Roger Peng, and Rafael Irizarry. Home to statistics; data; science; and Rafa's Rants.
Galaxy Project @galaxyproject
14K Followers 9K Following Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @[email protected]
IBENS @IBENS_ENS
2K Followers 229 Following Institut de Biologie de l'Ecole normale supérieure @ENS_ULM ENS-PSL/CNRS/INSERM #IBENS
The RNA Society @RNASociety
16K Followers 50 Following Official account of the RNA Society; on a mission for an RNA emoji; often enjoys base-pairing; always a fan of U.
Bioconf @Bioconf1
228 Followers 0 Following Announces upcoming biology seminars in the Paris area. For seminars of your institution to be added, contact bioconf (at) https://t.co/9EswPfDo7w
Inserm @Inserm
159K Followers 378 Following Institut national de la santé et de la recherche médicale. La science pour la santé.
CNRS 🌍 @CNRS
228K Followers 2K Following Organisme public 🇫🇷 de recherche pluridisciplinaire, le Centre national de la recherche scientifique c'est 33 000 personnes qui font avancer la connaissance.
PLOS Biology @PLOSBiology
105K Followers 8K Following PLOS Biology, the PLOS flagship journal in life sciences, is a highly selective open-access, peer-reviewed general biology journal @[email protected]Python Clean Code Tip: Use __all__ to define exported members of your package. Hint: IDEs will do a much better job at importing and autocomplete. 👇
Pytest for Beginners testdriven.io/blog/pytest-fo… This article looks at the very basics of using pytest for testing Python code. by @GirlLovesToCode #Python #pytest @pytestdotorg
New preprint on scGPT: first foundation large language model for single cell biology, pretrained on 10 million cells. Just as text is made of words, cells are characterized by genes Some thoughts on how cool this is & why it challenges the status quo of single cell analysis🧵🧵
Only a matter of time before a paper formalized this exercise: Automated #scRNAseq cell type annotation with GPT4, evaluated across five datasets, 100s of tissues & cell types, human and mouse. A🧵below with my thoughts on how such tools will change how #Bioinformatics is done.
While R is succinct and intuitive for numbers, I have mostly found it cumbersome for use with text or biosequence data. With the new BioNumPy library (biorxiv.org/content/10.110…), working with sequence data in Python feels like any other (numeric) vectors/matrices/arrays. 1/3
Tu viens jouer avec moi ? 🥰😳 Are you coming to play with me? 🥰😳
Python Data Visualization, Where To Start? #python talkpython.fm/episodes/show/…
5 websites for drawing scientific figures: 👇 🧵
peak orange cat
tired: gym rat wired: gym cat
Here is a confusion matrix. I spend a lot of time looking at it: This table is a goldmine of clues to improve a model! But there's something you can't see in this picture that I want to share with you: 1 of 14
Full body workout at home.
Enjoy your workout.
How to massage correctly 👇🏻
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