Microbiome Centers Consortium @All_Microbiomes
A Network of US Microbiome Centers - All Microbiomes All The Time Joined November 2020-
Tweets150
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Followers625
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Following122
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Likes24
We are excited to announce the first major release of our Unassigner software. You can now narrow down on species membership of your 16S rRNA sequences by ruling uncompatible bacteria or archaea. Check it out: github.com/PennChopMicrob…
👋Bactopia users! After 5 years of maintaining Bactopia, I need your help!🚀 What's next for Bactopia?🧐 Help shape the next 5 years of Bactopia by filling out this quick survey: forms.gle/v4UzA9KZJFWCLH… Please repost and share link with colleagues that also use Bactopia!🎉
#newPI The Microbial Ecophysiology Lab has a new member! Rehema Mrutu (from Tanzania) is PhD Student in Natural Resource Management & #ClimateChange at the @CDA_BUK & @BUK_Nigeria Rehema is a @cliffgrads scholar, and is interested in #methanogens #microbiome & #GHG emissions.
Excited to announce that the Microbiocode web site is now live! The site provides numerous software tools for scientific computation in Microbiome and Microbial Genomics research. Check it out! med.upenn.edu/microbiocode/
DAMG recently got a new desktop to power ONT sequencing, so I wrote a blog post about it: rrwick.github.io/2023/12/09/ont… In it, I describe the computer, give some setup notes and show its basecalling performance. Hopefully useful to anyone else setting up an ONT computer!
One Health Microbiome.. @PSUmBiome
3K Followers 2K Following The One Health Microbiome Center at Penn State optimizes, accelerates, and disseminates microbiome applications and knowledge. On BlueSky | LinkedIn | YouTube
Sean Gibbons 🦠💩.. @gibbological
5K Followers 2K Following microbiome science | associate professor @isbsci | affiliate prof @UWBioE & @uwgenome | @uwescience & @AMIposts fellow | systems bio of 💩 🦠 | 🏳️🌈 he/him
Dr Justine Debelius @JWoodelius
2K Followers 2K Following I look for data and stories in your poop. Microbiome experimental design and metadata enthusiast. Typos are mine. She/they Usually jwoodelius or jwdebelius
National Microbiome D.. @MicrobiomeData
2K Followers 264 Following Empowering the research community to more effectively harness microbiome data. Official Twitter account of the NMDC.
Kristina Campbell, mi.. @bykriscampbell
15K Followers 6K Following Reporting on the front lines of microbiome science. Health, diet, medicine, biotech. She. Mastodon @[email protected]
Dr. Michael D. L. Joh.. @blacksciblog
15K Followers 5K Following Assoc Prof @ImmunobiologyUA | Metal Meets Microbes | Killin' it with Copper | https://t.co/HqpWlw2ifx #NSURP2024 @NSURPorg https://t.co/y2BGIGFtaO
Seth Bordenstein @Symbionticism
11K Followers 2K Following Scientist, Huck Professor: Microbiome, Symbiosis, Genetics, Evolution, Wolbachia, #PhageWO | Education @WolbachiaProj | One Health Microbiome Center @PSUmBiome
Jack A Gilbert (he/hi.. @gilbertjacka
14K Followers 5K Following Microbial ecologist: EIC for mSystems; cofounder of BiomeSense; President for AMI. Father, Scientist, Pilot. Views are my own.
Carolee Bull @Buckhout_Bull
7K Followers 5K Following Plant Pathologist: lover of microbes, plants, music, and cats
Estelle Couradeau @Gloeomargarita
1K Followers 1K Following Ass. prof. at Penn State. In love with Cyanobacteria, growing relationship with all types of soil microbiomes.
Microbiome Virtual In.. @MicrobiomeVIF
3K Followers 563 Following • a free recurring bite-sized alternative to multi-day #microbiome conferences • ➡️ Every month, a new event... join the #MVIF community!
Amy Willis 😻 amydw.. @AmyDWillis
3K Followers 1K Following Biodiversity-loving, error bar-needing statistics nerd; Associate Professor @UWBiostat. Methods & software for #microbiome & #biodiversity data. She/her.
Britt Koskella @bkoskella
7K Followers 2K Following Evo-ecologist studying interactions among phages, microbiomes, and plants. Tweets about science, teaching, gender issues. Mainly at https://t.co/6uSII7Tp5b
Daniel T Leung @GlobalGutHealth
1K Followers 396 Following Infectious Disease doc @UofUHealth. Research on immunology, epidemiology, and treatment of diarrheal infections. Co-director @UofU3i. 🇭🇰🇨🇦🇺🇸 Views my own.
Ashley Shade, Ph.D. @ashley17061
4K Followers 685 Following microbial ecologist. broadway enthusiast. dog person. optimist. she/her director of research @INEE_CNRS @EcoMicroLyon adjunct assoc. professor @MSU_MGI @MSU_PSM
Dave “slowly leavin.. @surt_lab
15K Followers 5K Following Associate Prof at UArizona interested in genome rummaging and farm animals post = @surt_lab 🐘= @[email protected] “I’m something of a scientist myself”
Jingjing Li @JingjingLi84820
1 Followers 49 Following
Srishti Kashyap (स�.. @curious_srish
530 Followers 2K Following Postdoc @StephensonCC | PhD in Biochemistry @iiscbangalore | She/Her | Bio-active metabolites| Epigenetics | Noncoding RNA | Anticancer therapeutics |
Wenbin Du @feeuoo
702 Followers 3K Following PI at Inst Microbiol CAS #microbes #SingleCell #microfluidics #droplet | Postdoc @ismagilovlab @uchicago | Chemistry PhD @ZJU_China
Elena Quintanilla @ElenaQuint44882
0 Followers 6 Following
Mashuk Siddiquee @MashukSiddiquee
102 Followers 1K Following Graduate Assistant, Department of Civil and Environmental Engineering, The University of Toledo
Phil Onwumelu Ph.D. @PhilOnwumelu
208 Followers 2K Following Ph.D. (Business Administration) specialty : Human Capital Management
Phinda Magagula @magagul_phinda
201 Followers 2K Following Plant pathology | Agronomist | Agricultural Microbiomes |God’s very own
JMario_MD @JmarioMd
154 Followers 418 Following MD | IM by way of @MGHMedres | @Columbiamed for GI fellowship | @HarvardMed and @mit_HST | @Harvard '13 | #Microbiome #AI and Medicine | Habla Español
M20 Genomics @m20genomics
16 Followers 23 Following Pioneering life science with next-generation single-cell and spatial innovations
Alejandro Castellanos @alejandrocs_98
133 Followers 3K Following Microbiologist | Physicist | Computacional Biologist @uniandes | Colombian
Louai Labanieh @LouaiLabanieh
984 Followers 1K Following Parker Scholar @StanfordMed @Parkerici Engineering tiny assassins that kill cancer. Siebel | NSF | SGF | EGDE Fellow Mackall Lab & Cochran Lab
David Gootenberg, MD,.. @gootenbergmdphd
109 Followers 234 Following parent, pediatrician, incoming fellow @WUPedsID + @WashUi2db proud alum @huctw @hgsuuaw #climatechange, ID, cars, guns = greatest threats to humanity views=own
QIN Junjie @JunjieQin
29 Followers 91 Following
Ashley Bulseco, Ph.D. @AshleyBulseco
2K Followers 3K Following Microbial Ecologist @UofNH @COLSA_UNH interested in how we change the environment, one microbe at a time | Aquatic & Wetland systems | She/her 🏳️🌈🌊🌱🧬
Craig Williams @CraigWi90180918
13 Followers 130 Following
Microviable Therapeut.. @Microviable2024
8K Followers 9K Following Developing novel biological drugs harnessing the treasure of the human #microbiota to address unmet challenges in human diseases. #microbiome #GutAlive
Uday Pandey, PhD @microbeshunter
53 Followers 333 Following Alumni School of Biological Sciences @SBSNISER| Incoming Postdoc @WUSTLmed. Science@Gut microbiome 💩💩💩, intestinal epithelia|Hobby travelling 🧭🌎, cooking
Vignesh Senthilkumar @vig_senthil
234 Followers 1K Following MD/PhD @medicineUVA. UCLA grad. Infectious disease guy. Some science, mostly not. தமிழ்🇮🇳. NK cell fan.
Jim Reape @JimReape90210
181 Followers 692 Following Senior managing shareholder of The Reape-Rickett Law Firm. High net worth divorce.
Muriel Derrien @muriel_derrien
2K Followers 654 Following Scientist Human Gut microbiome @MIB_WUR 🇳🇱 - @DanoneResearch 🇨🇵 - now @RaesLab 🇧🇪 (@VIB_microbes @KU_Leuven). Opinions are my own.
tori @beingtorirae
278 Followers 494 Following She/Her/Hers Clinical Health Psych Doctoral Candidate | Yoga Instructor 🧘🏾♀️ | Prevention Advocate 🌱
Aiswarya @AiswwaryaPrasad
288 Followers 562 Following Microbial ecology and evolution | Gut microbiome | Metagenomics @[email protected] PhD student @PEngellab 🐝 @DMF_UNIL @iiscbangalore UG-MS ('15 -'20)
Nick @ncox89
102 Followers 94 Following
Umesh Gautam @umegautam
116 Followers 473 Following #scientist, passionate about #gut #Integrative #Physiology #gnotobiology #host #microbes #interaction #early life #prebiotics #probiotics. Dr BR Ambedkar
Nathalia Delgadillo O.. @NathaliaDelOrd
211 Followers 250 Following PhD candidate, Marine Microbiomes lab. Developing marine probiotics for coral resilience and ecosystem's health. Biorremediation and blue biotechnology.
DoriCallier @DCallier48692
35 Followers 2K Following
Siddiq Akbar @DaphniaSdq
350 Followers 816 Following Interested in host-microbiota interactions, Aquatic ecosystems and climate change, Zooplankton and phytoplankton, Water quality, Toxicology, Adaptations
Hina Sulehri @HinaSulehri1
267 Followers 2K Following Microbiologist, Immunologist, Zoologist. Interested in microbiome, gut brain axis, probiotics. Research student at JNU #jejunationaluniversity
Abiodun Ojo @AbiodunsesanOjo
223 Followers 2K Following #Microbiologist|researcher|teacher|bioinformatics enthusiast
Arash Naziripour @ArashNaziripour
3 Followers 79 Following
Rebecca Ulrich von Ba.. @neurons_n_naps
148 Followers 544 Following Biomedical Engineer/PhD Candidate/Mom/She/They. PhD pursuit & parenting in parallel; practically pithy in every way.
Ayana (she/her/hers/t.. @yana_scotte
445 Followers 787 Following Biochem BS | Microbio MS | ADHD | Education Advocate | Love of animals, observing their behavior, and studying their diseases | Scifi, Art, & Dance enthusiast.
Ashley M. Toney, PhD,.. @AshleyMToney
291 Followers 654 Following Postdoc in the Stacy Lab 🦷 @CCLRI | Latina 👩🔬 | 🍉 Nutrition, Gut & Oral Microbiome, Latino/a/e health | 🥑 #RegisteredDietitian | Opinions are my own
Leonor García-Bayona @LGBacteria
1K Followers 2K Following 🇨🇴 Assistant Professor Stanford Micro & Immuno. Gut microbiome sociomicrobiology. @cientificolatin Strategic Relations team. @lgbacteria.bsky.social
Buck Samuel @microbeMinded
3K Followers 5K Following organismal biologist | PI @BCM_Microbiome | continually amazed by microbes and their superpowers | #microbiome #Celegans | he/him (@microbeMinded.bsky.social)
Isolation Bio Inc @IsolationBio
30 Followers 83 Following We enable scientists accelerate microbiome discoveries in R&D and product development. How? With our Prospector high-throughput microbial cultivation platform.
Dr V @emily_vansyoc
128 Followers 259 Following MS Soil Science, University of Wyoming. PhD student in Integrative and Biomedical Physiology, Penn State. 🐾 Great Dane mama👩🏼💻👩🏼🔬
Lola Holcomb @LolaInSTEM
28 Followers 114 Following Biomedical Science PhD Candidate at UMaine 🧬 | Thinking about bioinformatics, gut microbial ecology, and social equity | she/her 🏳️🌈
Nina Boyle @Nina_R_Boyle
4 Followers 35 Following
The Garey Lab @TheGareyLab
229 Followers 248 Following
Sonny TM Lee @sonnytmlee
377 Followers 516 Following Assistant Professor - microbial ecology. Getting a sneak peek into host-microbes interaction. #LeeLab he/him/his
teresa @tessatav
16 Followers 1K Following
YUYU @YUYUCHENG1
129 Followers 3K Following
o_googl @o_googl
39 Followers 2K Following
Lorena Elizabeth Oña @lorenaona
81 Followers 177 Following Ecuatoriana dedicada a conquistar cumbres
الحمدلله 🤍.. @Biologist_2030
120 Followers 2K Following
One Health Microbiome.. @PSUmBiome
3K Followers 2K Following The One Health Microbiome Center at Penn State optimizes, accelerates, and disseminates microbiome applications and knowledge. On BlueSky | LinkedIn | YouTube
Sean Gibbons 🦠💩.. @gibbological
5K Followers 2K Following microbiome science | associate professor @isbsci | affiliate prof @UWBioE & @uwgenome | @uwescience & @AMIposts fellow | systems bio of 💩 🦠 | 🏳️🌈 he/him
National Microbiome D.. @MicrobiomeData
2K Followers 264 Following Empowering the research community to more effectively harness microbiome data. Official Twitter account of the NMDC.
Kristina Campbell, mi.. @bykriscampbell
15K Followers 6K Following Reporting on the front lines of microbiome science. Health, diet, medicine, biotech. She. Mastodon @[email protected]
Seth Bordenstein @Symbionticism
11K Followers 2K Following Scientist, Huck Professor: Microbiome, Symbiosis, Genetics, Evolution, Wolbachia, #PhageWO | Education @WolbachiaProj | One Health Microbiome Center @PSUmBiome
Jack A Gilbert (he/hi.. @gilbertjacka
14K Followers 5K Following Microbial ecologist: EIC for mSystems; cofounder of BiomeSense; President for AMI. Father, Scientist, Pilot. Views are my own.
Carolee Bull @Buckhout_Bull
7K Followers 5K Following Plant Pathologist: lover of microbes, plants, music, and cats
Estelle Couradeau @Gloeomargarita
1K Followers 1K Following Ass. prof. at Penn State. In love with Cyanobacteria, growing relationship with all types of soil microbiomes.
MEEhubs @MEEhubs
969 Followers 15 Following A hub-based global conference on Microbial Ecology and Evolution, January 9-11, 2024! https://t.co/6LTqUCluOG
Britt Koskella @bkoskella
7K Followers 2K Following Evo-ecologist studying interactions among phages, microbiomes, and plants. Tweets about science, teaching, gender issues. Mainly at https://t.co/6uSII7Tp5b
Ashley Shade, Ph.D. @ashley17061
4K Followers 685 Following microbial ecologist. broadway enthusiast. dog person. optimist. she/her director of research @INEE_CNRS @EcoMicroLyon adjunct assoc. professor @MSU_MGI @MSU_PSM
Dave “slowly leavin.. @surt_lab
15K Followers 5K Following Associate Prof at UArizona interested in genome rummaging and farm animals post = @surt_lab 🐘= @[email protected] “I’m something of a scientist myself”
Louai Labanieh @LouaiLabanieh
984 Followers 1K Following Parker Scholar @StanfordMed @Parkerici Engineering tiny assassins that kill cancer. Siebel | NSF | SGF | EGDE Fellow Mackall Lab & Cochran Lab
AllofUsResearch @AllofUsResearch
15K Followers 317 Following We want to speed up health research. Be 1 in a million + #JoinAllofUs. Visit: https://t.co/VqpRGAdYNF Privacy Policy: https://t.co/5SowCXga8E Likes ≠ Endorsement
Vignesh Senthilkumar @vig_senthil
234 Followers 1K Following MD/PhD @medicineUVA. UCLA grad. Infectious disease guy. Some science, mostly not. தமிழ்🇮🇳. NK cell fan.
PreMiEr_ERC @ErcPremier
27 Followers 16 Following Official Twitter account of PreMiEr, the NSF Engineering Research Center for Precision Microbiome Engineering.
EMBL Events @EMBLEvents
27K Followers 1K Following We are @embl events. 🧬 Join our world-class courses, conferences and workshops at the forefront of molecular life science and its applications. 👩🏻🔬🔬
UChicagoIBD @UChicagoIBD
3K Followers 86 Following Leading center for inflammatory bowel disease (IBD) diagnosis, treatment, and scientific research.
Eugene B Chang, MD @MicrobiomeDoc
245 Followers 97 Following Microbiome focused team scientist working on IBD, Professor of GI, Director of the Microbiome Medicine Program @UChicagoMed, my tweets are my own
Pat Schloss @PatSchloss
11K Followers 652 Following Papa to 9 microbes, mackerel snapper, farmer, master of sucking. I want to help you learn the skills you'll need to succeed in science
CHOP Research @CHOP_Research
6K Followers 617 Following At the Children's Hospital of Philadelphia Research Institute, we advance the health of children by turning scientific discovery into medical innovation.
Suzanne Devkota @Suzanne_Devkota
3K Followers 755 Following Director, Cedars-Sinai Human Microbiome Research Institute | Associate Prof, Div. of Gastroenterology Lover of all things microbial.
Sebastian Deorowicz @sdeorowicz
338 Followers 35 Following Data compression. Algorithms for genome sequencing compresion and analysis.
Leigh A. Frame 🍎�.. @PhD_Leigh
4K Followers 4K Following Director @GWIntegrative, @GWSMHS. #Nutrition, #Microbiome, #Obesity research. @JohnsHopkinsSPH grad. Past @HopkinsMedicine #Surgery & @NIH. Yogini. Tweets mine.
Contamination Club @ContamClub
11K Followers 10 Following One of the greatest discoveries in microbiology came from contamination. Join the club and share yours here 🦠🧫 logo by @sylsyltong
Joerg Graf @JoergGraf
1K Followers 837 Following Researcher, Pacific Biosciences Research Center, University of Hawaii Manoa, symbiosis, microbiomes, antibiotic resistance, @[email protected]
World Microbiome Day @WMicrobiomeDay
6K Followers 833 Following June 27th is a day to celebrate all things Microbiome. The theme for #WorldMicrobiomeDay 2023 is ‘Microbes and Food’. #Microbiomes4Life #WMD2023
Ahmed M. Moustafa @Ahmed_Microbes
984 Followers 3K Following PhD BPharm Assistant Professor @Penn & @ChildrensPhila Director Sequencing Core @PCMicrobiome Co-Director microbial Archive and Cryo-collection (mARC)
Joanne Emerson @jemersonmicro
2K Followers 2K Following Associate Professor @UCDavis, microbial/viral ecologist, fan of the outdoors, she/her
Jill Banfield @BanfieldJill
8K Followers 3 Following Prof Microbial Metagenomics, UC Berkeley, Member of National Academy of Science, Royal Society, and the Australian Academy of Science
Ashley Wolf @AshleyRWolf
645 Followers 407 Following Day by day with my one wild and precious pre-tenure lab | Asst. Professor @UCBerkeleySPH / @CCBBerkeley 👩🔬🧬
KevinDKohl @KevinDKohl
6K Followers 2K Following I study the physiology and gut microbiome of wild vertebrates 💩 Asst. Professor at University of Pittsburgh - #QueerSTEM 🏳️🌈 #poly - he/him
Mike Robeson @DrMicrobeson
990 Followers 2K Following Assist. Prof. at @uamshealth DBMI #bioinformatics #microbiome #primaryciliarydyskinesia Tweets are my own. Retweets/likes not necessarily endorsement. 😷
Casey Hoffman @Casey_Scientist
846 Followers 2K Following I love bacteria, a lot | Program Manager @UVA_TUMI | Postdoc @ohsummi | Ph.D. @uva_bims | B.S. @juniatacollege | Tweets about science, nature, & dogs | RCTID
KBase @DOEKBase
2K Followers 950 Following The Dept. of Energy Systems Biology Knowledgebase (KBase) is a bioinformatics platform designed to investigate microbes, microbial communities, and plants.
Elisha WC @ElishaMariePhD
1K Followers 1K Following Helping science be more efficient #FAIR, #bigdata, #openscience. Tweets = me. I am ocean, peanut butter, microbes, puns. (she/her)
Erika Szymanski @ErikaSzymanski
837 Followers 614 Following Asst prof. rhetoric of science/STS. Microbiomes, bioengineering, wine science, sci comm (not that kind), writing things. Likes verbing. @[email protected]
Nigel Mouncey @NigelJMouncey
665 Followers 510 Following JGI Director, SIMB Past President, National Microbiome Data Collaborative, JGI Secondary Metabolites Science Program Head, he/his
Katrine Whiteson @KatrineWhiteson
1K Followers 2K Following
Maren Pein @Maren_Pein
222 Followers 301 Following Postdoc @UCIrvine, CIRM scholar; PhD @DKFZ @hi_stem_lab; Spatial & single-cell mapping of the human breast in health & cancer - Metastasis - Microenvironment
Pedro J. Torres @PedroJTorres_
163 Followers 495 Following Microbiology, Microbiome, Bioinformatics, Data Science
Thomas Sharpton @tjsharpton
4K Followers 2K Following Microbiome surveyor, metagenome analyzer, bioinformatics programmer, and Associate Professor @oregonstateuniv
Sarai Finks, PhD (she.. @SaraiFinks
315 Followers 314 Following
Andrea Chiara Masi @ACMasi10
377 Followers 652 Following Postdoc - iinvestigating the interaction between the gut microbiome, human milk oligosaccharides, and preterm enteroids
Hale Lab at OSU @Hale_Microbes
616 Followers 688 Following We study animal microbiomes in health and disease. (Dr. Vanessa Hale - Asst. Professor with @OSUVetPrevMed and @IDIatOSU). Views my own.
GSC @genomestandards
671 Followers 125 Following Genomic Standards Consortium, international community for the development and promotion of genomic standards.
Sullivan Lab at OSU @Lab_Sullivan
3K Followers 182 Following We develop new ways to “see” and understand viruses in the laboratory and in nature.
Megan Behringer @megbehri
2K Followers 1K Following Assistant Professor @VanderbiltU BioSci ⚓️| #NewPI | #FirstGen | Experimental microbial evolution in stressful and structured environments 🧫🧪 🧬| she/her
Caylon Yates @caylonyates
181 Followers 292 Following Microbial Ecologist | Microbiome Scientist @FungaPbc
Cassie Ettinger, PhD @casettron
1K Followers 1K Following NSF OCE postdoc fellow with @stajichlab; PhD with @phylogenomics; ❤️ microbiomes 🦠🧬, marine fungi 🌊🍄, cats 🐈, books 📚 & more; 👩🏻🔬 she|her
Sarah Allard @sallardvt
305 Followers 737 Following Associate Project Scientist at UCSD SOM and Scripps Institution of Oceanography. Microbiome research for safe food, clean water, healthy ecosystems. she/her.
Jaeyun Sung, PhD @jsung0906
328 Followers 226 Following Assistant Prof. @MayoClinic. Leading a translational computational biology team focused on biomarker discovery for autoimmune and neurodegenerative disorders.
Runhang Shu @Runhang1
55 Followers 178 Following CMB PhD student @UCIrvine Microbiome-virome ecology | Coding and Dancing
Syed Shujaat Ali Zaid.. @SSA_ZAIDI
239 Followers 797 Following CS Researcher. Research areas: Human microbiome; Gut-brain nexus; software development; brain virome; Human disease target & networks identification
Dr. Alonna Wright @lonna_wright
945 Followers 2K Following Bioinformatics postdoc @novozymes, PhD from @phylogenomics lab @ucdavis + @UCDavisBiotech. Scientist, partner, pet mom, cake baker. KY➡️CA. She/her
Emily Olesin Denny @EmmaLeeDenny
67 Followers 115 Following Ph.D. student at @UiB, @BioUiB / @CBU_Bergen. Environmental microbiologist, alto, hobby artist, cool mom. Views are my own.We are excited to announce the first major release of our Unassigner software. You can now narrow down on species membership of your 16S rRNA sequences by ruling uncompatible bacteria or archaea. Check it out: github.com/PennChopMicrob…
👋Bactopia users! After 5 years of maintaining Bactopia, I need your help!🚀 What's next for Bactopia?🧐 Help shape the next 5 years of Bactopia by filling out this quick survey: forms.gle/v4UzA9KZJFWCLH… Please repost and share link with colleagues that also use Bactopia!🎉
#newPI The Microbial Ecophysiology Lab has a new member! Rehema Mrutu (from Tanzania) is PhD Student in Natural Resource Management & #ClimateChange at the @CDA_BUK & @BUK_Nigeria Rehema is a @cliffgrads scholar, and is interested in #methanogens #microbiome & #GHG emissions.
Excited to announce that the Microbiocode web site is now live! The site provides numerous software tools for scientific computation in Microbiome and Microbial Genomics research. Check it out! med.upenn.edu/microbiocode/
DAMG recently got a new desktop to power ONT sequencing, so I wrote a blog post about it: rrwick.github.io/2023/12/09/ont… In it, I describe the computer, give some setup notes and show its basecalling performance. Hopefully useful to anyone else setting up an ONT computer!
Announcing our Fall Seminar speakers! Fridays @ 11am @jwmc1987 @bcem_uniandes @bykriscampbell @TheFerrariLab @Isabel_Laforest @IonatZurr @FerranPichel @Gloeomargarita @JRaul_Roman @ChadFautt @bobems1215 @DeniseMonack @mingxunwang Amber Benezar, Greg Goyne, Waleed El Sayed
Celebrating multiple milestones with @PCMicrobiome sequencing & microbialARC teams over a lab lunch. Thrilled to nurture future scientists: 2 @Penn undergrads (#PURM supported) & 2 high school students (#CHOPRISES @CHOP_Research). Our teams are growing, as is our commitment!
🚨 Application for the 6th Intl. Viromics Workshop are now open!! 🚨 Join us in-person for 3 days to learn virus ID, classification, taxonomy, host linkages & databases, and more. APPLY BY JULY 31: forms.gle/zDUEj1AEjifs12…. #viromics #virus #ecology #bioinformatics #phage
Members of our sequencing and analytical core participated in CHOP's Research Symposium on the Microbiome last Tuesday and Wednesday. #AcademicTwitter @CHOP_Research
Thrilled to share our latest preprint, in which @KarelBrinda (along with collaborators @leandro_ishi and @ZaminIqbal at EBI) introduces phylogenetic compression for storage and search of enormous microbial genome libraries: 1/ biorxiv.org/content/10.110…
The CHOP Microbiome Center @PCMicrobiome and microbialARC are #hiring. Research Tech II - Sequencing Core careers.chop.edu/mg-uP0G Research Tech II - microbialARC careers.chop.edu/1GpFxZO Resource Coordinator II - CHOP Microbiome Center - Hybrid careers.chop.edu/-aTEFQZ #Jobs
Often >100-fold compression ratio. Instant access to any subsequences in an archive. One of the most impressive tools I have used recently. This is how pangenome data will be stored in future.
AGC, our method for compression and storage of pangenome data is now published in Bioinformatics: academic.oup.com/bioinformatics… . Thanks @lh3lh3 for a nice collaboration.
AGC, our method for compression and storage of pangenome data is now published in Bioinformatics: academic.oup.com/bioinformatics… . Thanks @lh3lh3 for a nice collaboration.
The 10 Biggest News Stories That Made The Year for the Microbiome Center at @penn_state @huckinstitutes. With nearly 12,000 views, the top news articles showcase we are a world-class team and destination for microbiome scholarship. huck.psu.edu/institutes-and…
Bordenstein Lab (@Symbionticism & @srbordenstein) @penn_state seeks to fill #research positions (postdoc, staff scientist, technician, research professor) For projects focused on the rules of animal-microbe #endosymbiosis in #Drosophila & #Nasonia! jobrxiv.org/job/bordenstei…
Postdoc position! Want to devote your expertise in data science to accelerate the pace at which new medicines are found? Join our lab at the Broad Institute in Cambridge, MA, USA to glean insights from biological images! More info: broad.io/mlcbpostdoc Pls RT!
Today, #ASMAdvocacy is partnering with @All_Microbiomes to advocate on Capitol Hill! Learn more about why microbiome research is critical for human, animal and environmental health. asm.social/Wf #ASMHillDay
World Microbiome Day! ASM's 3 part webinar series shows policymakers how microbiome research spans the spectrum of scientific disciplines—from the human microbiome & gut health, to agriculture & soil health, to space, the oceans & beyond. #Microbiomes4Life asm.social/Dr
Happy @WMicrobiomeDay! The CHOP Microbiome Sequencing Core, led by Dr Moustafa @Ahmed_Microbes ,takes this day seriously. The Chop Microbiome Center is always there to help you with all your microbiome research needs. Visit our site research.chop.edu/pennchop-micro… for more information.
The PSU Microbiome Center is one of the largest microbiome research & education units in the U.S. We seek a Research Project Manager (PhD or MS degree preferred) to advance efforts and outreach across 9 colleges, 16 campuses, and 3 institutes. Join us! psu.wd1.myworkdayjobs.com/en-US/PSU_Staf…
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