Jonathan Funk @JonathanFunk12
PhD student - AI for Protein Design Institute for Protein Design Seattle, Washington Joined March 2018-
Tweets121
-
Followers267
-
Following667
-
Likes1K
✨ ReaSyn ✨ A generative model designed for predicting molecular synthesis pathways. ReaSyn reframes molecule synthesizability as a chain‑of‑thought (CoT) problem. ReaSyn’s step‑wise ‘reasoning’ generates designable molecules, crushing prior SOTA in reconstruction & hit…
We asked ourselves what could we do if we worked cooperatively as a team to create a single model that could design any biomolecular interactions. Yesterday, we reported details of RFdiffusion3, the next step towards building functional proteins straight from the computer.
Great to finally have this available for people 🙌 Thank you to everyone involved, especially @nscorley & @r_krishna3! We'll be pushing a few smaller updates in the coming days to enhance usability for everyone (including some docs on what you can do with it) - so stay tuned (:
Great to finally have this available for people 🙌 Thank you to everyone involved, especially @nscorley & @r_krishna3! We'll be pushing a few smaller updates in the coming days to enhance usability for everyone (including some docs on what you can do with it) - so stay tuned (:
RFDiffusion3 generates all atom bound conformation, making it significant for flexible targets like DNA. An excellent teamwork to achieve something impossible by any one of us in just few months. @butcher_jasper @r_krishna3 biorxiv.org/content/10.110…
Very excited to share our paper "De novo Design of All-atom Biomolecular Interactions with RFdiffusion3", now on BioRXiv. biorxiv.org/content/10.110… 1/n
Accelerating Biomolecular Modeling with AtomWorks and RF3 🚀 New preprint from David Baker!🚀 1. A new framework called AtomWorks has been introduced to revolutionize biomolecular modeling. AtomWorks provides a unified and modular platform for developing state-of-the-art…
Excited to share our preprint “BoltzDesign1: Inverting All-Atom Structure Prediction Model for Generalized Biomolecular Binder Design” — a collaboration with @MartinPacesa, @ZhidianZ , Bruno E. Correia, and @sokrypton. 🧬 Code will be released in a couple weeks
De novo design of miniprotein agonists and antagonists targeting G protein-coupled receptors 🚀 New preprint from David Baker!🚀 1. This paper introduces a computational and experimental approach for designing miniproteins targeting G protein-coupled receptors (GPCRs) with high…
Announcing Neo-1: the world’s most advanced atomistic foundation model, unifying structure prediction and all-atom de novo generation for the first time - to decode and design the structure of life 🧵(1/10)
New paper - Transformers, but without normalization layers (1/n)
New paper: turns out you can train deep nets without normalization layers by replacing them with a parameterized tanh()
New paper: turns out you can train deep nets without normalization layers by replacing them with a parameterized tanh()
DisDock: A Deep Learning Method for Metal Ion-Protein Redocking 1. DisDock introduces a deep learning model designed to predict protein-metal docking with high accuracy, particularly focusing on the interaction of metal ions with proteins using a distance-based approach. 2.…
Build human-like memory for your Agents! Every agentic and RAG system struggles with real-time knowledge updates and fast data retrieval. Zep AI solves these issues with its continuously learning and temporally-aware Knowledge Graph—think of it as human memory for AI Agents.…
Top 5 advances in medicine this week (🧵) 1. AI-designed snake anti-venoms These inhibit the 'three-finger toxins' that make the venom of snakes like cobras and mambas lethal - cheaper, with higher affinity and more scalability than current therapies nature.com/articles/s4158…
The best way to change the world is to start by changing yourself.
Do not allow yourself to become bitter, no matter how difficult life becomes.
Advancing enzyme engineering with an active learning method Many modern applications in catalysis, green chemistry, and biotechnology hinge on enzymes that are precisely tailored for specific tasks. Directed evolution has been a major driver of enzyme optimization, but…
someone has finally done it test time compute + diffusion models a really interesting one for sure 🧵
Large Language Model is Secretly a Protein Sequence Optimizer 1/ This paper demonstrates that large language models (LLMs), originally trained on massive text datasets, can be effectively used as protein sequence optimizers. By integrating them into a directed evolutionary…
In biology we measure downstream variables like genes, neurons, or species. But we can’t always measure their underlying causes. In @PhysRevX I present a physics-based algorithm for learning causal drivers from time series (1/n) go.aps.org/3PwXhxe
La Becaria Indiscreta @Gossip_Lab
49 Followers 324 Following Cazadora de chismes académicos 🕵️♀️ UNAM, CINVESTAV, y todo lo que se calla en el CVU 😏 Aquí nadie es santo, ni el PI XOXO, chica indiscreta de bata blanca
Paisley Rivera @PdL32MybTIpo9J
2 Followers 800 Following 30%+ monthly target | 2 high-conviction US stocks. Get instant trade alerts and clear stop/TP. Join now. @Westcsrant
Diane @Afwooirsaw8205
35 Followers 2K Following Don’t be the girl who needs a man, be the girl a man needs.
Freya Sterling @Ibertux15357
3 Followers 942 Following
Nathan Greenwood @GreenwoodNathan
63 Followers 143 Following Protein design for cancer therapeutics. Molecular biology undergrad @UW, current research scientist in David Baker lab.
keshav Kant @keshavvkant
354 Followers 5K Following A fractal mind, trying to find self similarities in the world. MSc biology'24 @AshokaUniv
JodiePeacock @Smt55nM8a2maAeV
32 Followers 545 Following
Kristoffer H. J. @KrisHaurum
499 Followers 734 Following Assistant Professor at DTU, using CRISPR to decipher T cell signaling @[email protected]
Jaime Vaquer-Alicea @JVaquerAlicea
96 Followers 979 Following
RubyAlcott @op4vTQPfB2WfIpu
3 Followers 663 Following
ChemSpy @chem_spy
325 Followers 683 Following Chemistry, biology, ML and all that lay betwixt. Retweets indicate personal excitement.
Saman Salike @samansalike31
43 Followers 281 Following intellectual flaneur, lover of (designed) proteins
Gabriele Corso @GabriCorso
8K Followers 698 Following PhD student @MIT • Research on Generative Models and Geometric Deep Learning for Biophysics • BA @CambridgeUni • Former @TwitterResearch, @DEShawGroup and @IBM
Matthew Clarke @Matthew05049818
0 Followers 3K Following
Sahil Verma @Sahil1V
596 Followers 1K Following PhD student @uwcse. Robustness and Interpretability. Currently at @MSFTResearch. Former intern at @amazon, @itsArthurAI. Undergrad @IITKanpur
Carwad @Carwad6139
5 Followers 326 Following I’m not a one in a million kind of girl, I’m a once in a lifetime kind of woman.
Andre Watson 🧬 @nanogenomic
6K Followers 7K Following CEO @Ligandal 🧬: Tissue-specific targeting with AI + nanotech. On a mission to enable precision personalized predictive medicine. Forbes 30U30.
Simon Mathis @SimMat20
995 Followers 1K Following PhD @Cambridge_Uni | AI in protein design & engineering | biotech & environmental applications | enzymes | geometric DL | prev. @ETH_physics
Muhammod Rafsanjani @RafsanjaniHub
336 Followers 3K Following 📎 Learning & Research: Deep Learning, Computational Protein Design, Protein Language Models. 📎 PhD Student at Drexel University. 📎 Becoming an avid reader.
Charlie Harris @charlieharris01
2K Followers 1K Following AI/ML, biotech, policy, flying, sometimes in that order | SovAI Unit @SciTechgovuk | PhD @Cambridge_Uni | Prev @benevolent_ai @imperialcollege | Glider Pilot
Shingo Honda (本田 ... @akg_entrance
2K Followers 948 Following Postdoc @UWproteindesign; Protein design/Analytical chemistry/Single-molecule biophysics/Cell engineering/ORCID iD: https://t.co/wvKDMBiKaG
Raktim Mitra @Raktim7879
248 Followers 136 Following Institute for Protein Design, University of Washington || PhD @ QCB, University of Southern California || CSE, IIT Kanpur || Soccer, Music and Painting
Jasper Butcher @butcher_jasper
168 Followers 44 Following BakerLab PhD Student in CS @ UW | MChem Oxford | Enzyme Design
Rafi Brent @RafiBrent
18 Followers 12 Following PhD student at the Institute for Protein Design | Baker Lab | Machine Learning for Protein Design | University of Washington Molecular Engineering || Yale MB&B
Aditi Merchant @aditimerch
326 Followers 272 Following BioE PhD student @stanford in the Hie Lab // ML for SynBio
Elodie @g8Ui9LJbOkhpFSf
11 Followers 370 Following
Milena @PjlijJkX1HUAbu2
22 Followers 1K Following Success is not about the money, it’s about the freedom.
Uitwubout @Uitwubout71984
30 Followers 2K Following Like to talk Do not hold any investment products
Rhawgeb @rhawgeb79965
0 Followers 113 Following
Will Chen @wchenomics
766 Followers 670 Following @DamonRunyon Fellow at Baker lab @UWproteindesign. PhD with @JShendure. mainly at https://t.co/WpSk6RTizP
Arwen @Jahor4670215
30 Followers 2K Following Be fearless in the pursuit of what sets your soul on fire.
Timmothy Cormier @cormier75524
128 Followers 3K Following
Secure Cyber Space So... @SecCyberSpace
44 Followers 561 Following SCS Solutions simplifies cybersecurity for small firms. Ensuring effective protection and compliance, empowering clients to focus on their business.
Eliezer Zboncak @EZboncak20833
98 Followers 3K Following
Lalhu @Lalhu6952
43 Followers 2K Following
Alflubi @Alflubi9081
16 Followers 558 Following
MysticEmmaNelson @Xecea582004
21 Followers 2K Following Always smiling Taking life one step at a time
Mckenna Grimes @GrimesMcke22220
22 Followers 2K Following
Irneorna @Irneorna4207
27 Followers 1K Following
Kara Smitham @KaraSmitha96491
112 Followers 5K Following
Protein Data Bank @PDBeurope
22K Followers 800 Following PDBe is a founding member of the wwPDB. The PDBe team is also responsible for the PDBe-KB, AlphaFold DB and 3D Beacons resources.
ChimeraX (bsky: chime... @UCSFChimeraX
7K Followers 15 Following UCSF ChimeraX - software for visualizing biomolecules
Jason Yim @json_yim
2K Followers 323 Following PhD student @MIT_CSAIL. Generative models, protein design. 🦋 Bluesky handle: https://t.co/MPlEjog02q On X until the exodus is complete.
Simon Mathis @SimMat20
995 Followers 1K Following PhD @Cambridge_Uni | AI in protein design & engineering | biotech & environmental applications | enzymes | geometric DL | prev. @ETH_physics
Nate Corley @nscorley
50 Followers 14 Following PhD Candidate @ the University of Washington's Institute for Protein Design | Baker Lab | Machine Learning for Protein Design | Enzymes
Mohamad Abedi @Mohamad_Abedi
596 Followers 180 Following Palestinian-American scientist/Bioengineer. Refugee with the privilege to dream. @UWproteindesign Baker Lab. BioEng PhD @Caltech. @PDSoros Fellow
Shingo Honda (本田 ... @akg_entrance
2K Followers 948 Following Postdoc @UWproteindesign; Protein design/Analytical chemistry/Single-molecule biophysics/Cell engineering/ORCID iD: https://t.co/wvKDMBiKaG
Ian Humphreys @IanRHum
449 Followers 188 Following Computational structural biology. PhD from Baker lab @UWproteindesign
Raktim Mitra @Raktim7879
248 Followers 136 Following Institute for Protein Design, University of Washington || PhD @ QCB, University of Southern California || CSE, IIT Kanpur || Soccer, Music and Painting
Jasper Butcher @butcher_jasper
168 Followers 44 Following BakerLab PhD Student in CS @ UW | MChem Oxford | Enzyme Design
Arc Institute @arcinstitute
38K Followers 59 Following A new scientific institution for curiosity-driven biomedical science and technology.
Kristoffer H. J. @KrisHaurum
499 Followers 734 Following Assistant Professor at DTU, using CRISPR to decipher T cell signaling @[email protected]
The Baker Lab Podcast @BakerLabPodcast
150 Followers 1 Following Your front-row seat to the human side of science.
Andreas Laustsen @AndreasLaustsen
1K Followers 261 Following Professor & Biotech Entrepreneur Antibody discovery | Toxinology | Snakebite envenoming | Infectious diseases | Microbiome | Antimicrobial resistance
Rune Busk Damgaard @rbdamgaard
2K Followers 1K Following Associate Professor, Section for Medical Biotechnology, Technical University of Denmark. Studies ubiquitin signalling in inflammation, metabolism, and disease.
Dr. Tim Lüddecke @LuddeckeTim
1K Followers 2K Following Biochemist/Zoologist studying🕷️🐍🐜🐸 toxins. PI of Animal Venomics Lab @Fraunhofer_IME & @LOEWE_TBG | #firstgen #newPI #LINO23Alumnus
Kartik Sunagar @anaturalist
2K Followers 228 Following Associate Professor at @iiscbangalore. PI at @LabVenomics. Research on animal (🐍🦂🕷️🐝🦎) venoms and novel therapeutics for snakebite in 🇮🇳.👨🔬👨💻📷
Ronald Jenner @evolriffs
693 Followers 103 Following Venom researcher @NHM_London. Authored 'Venom' with @EivindUndheim. Also ❤️ history of biology, Belgian ale, 🎸 music. Views are mine alone.
Yehu Moran @YehuMoran
3K Followers 1K Following Evolutionary biologist @HebrewU Opinions are my own.
Emily Taylor @snakeymama
9K Followers 3K Following Professor of Biology at Cal Poly Bailey College of Sci & Math, Founder of @CoastSnake, Co-Founder of @Rattlecams. She/Her/Hers.
Sean Bush MD @seanpbushmd
936 Followers 1K Following
Maik Damm 🐍 @DammMaik
1K Followers 941 Following All about Snakes and Venoms 🐍 Mass Spec & Venom researcher. Founder of 🎙 #VenomWednesday and 📰 #TheWeeklySerpent. TU Berlin Alumni
Save The Snakes @savethesnakes
3K Followers 67 Following Save The Snakes is dedicated exclusively to #snake #conservation and human-snake conflict mitigation. Together we can #SaveTheSnakes.
Timothy Jenkins @TimothyPJenkins
828 Followers 480 Following Head of Data Science and Assistant Prof at DTU Bioengineering with a keen interest in antibody discovery, de-novo protein design, ML, and next-gen therapeutics.
Kieran Didi @DidiKieran
872 Followers 1K Following Research scientist @nvidia and PhD Student in ML at @UniofOxford with @mmbronstein | Learned a lot @Cambridge_CL @emblebi @TBioinf @KnowlesLabCamb @BioMed_X
Tomas Geffner @tomasgeffner
302 Followers 1K Following (ex) tennis, (trying) ML. Research Scientist at NVIDIA, views are my own. Previously, intern at DeepMind, VantAI, Microsoft research, and Amazon AWS.
Karsten Kreis @karsten_kreis
3K Followers 678 Following Principal Research Scientist at @NVIDIA | Former Physicist | Deep Generative Learning | Flows and Diffusion | Proteins and Molecules Opinions are my own.
Adrian Bunzel 🇪�... @AdrianBunzel
1K Followers 343 Following Creating enzymes by computational design and directed evolution. Group Leader at MPI for Terrestrial Microbiology
Kyle Tretina, Ph.D. @AllThingsApx
4K Followers 471 Following Follow for AI in Digital Biology and Drug Discovery @NVIDIA, ex Insilico Medicine, ex Yale, PhD UMaryland, views are mine, DM for collabs
Tanishq Mathew Abraha... @iScienceLuvr
81K Followers 1K Following CEO @SophontAI | Founder @MedARC_AI | PhD at 19 (2023) | ex Research Director Stability AI | Biomed. engineer @ 14 | TEDx talk➡https://t.co/xPxwKTq6Qb
GAMA Miguel Angel �... @miangoar
2K Followers 1K Following Biologist that navigates in the oceans of diversity through the space-time | MSc in Biochem/Bioinfo @ibt_unam 🇲🇽 | Protein evo, metagenomics & AI/ML/DL
Kaixuan Huang @KaixuanHuang1
1K Followers 931 Following PhD Student @Princeton; Google PhD Fellowship 2024, Ex-Intern @GoogleDeepMind; undergrad @PKU1898. opinions my own
Biotite @biotite_python
356 Followers 6 Following This Python package is your Swiss army knife for bioinformatics. It allows analysis of sequence and biomolecular structure data in an easy and efficient manner.
VantAI @vant_ai
3K Followers 10 Following Unlocking a new chapter in medicine by making protein interactions programmable
Po-Shen Loh @PoShenLoh
12K Followers 255 Following Social entrepreneur • Intl Math Olymp Fndn VP Advancement • Founder https://t.co/3P8QqOQ9QX NOVID expii • Math Professor @CarnegieMellon
Linda Teuteberg @LindaTeuteberg
43K Followers 182 Following #Brandenburgerin | Bundesvorstand @fdp | Stellv. Vorsitzende Gegen Vergessen - Für Demokratie e.V. | Stellv. Vorsitzende @LEStiftung
Lea Xenia @tatentschluss
16K Followers 273 Following eure liebste liberalala 💛, in der examensvorbereitung
ZDFheute @ZDFheute
1.3M Followers 301 Following Hier twittert die ZDFheute-Redaktion | Impressum https://t.co/r1GyevxMXG | Netiquette https://t.co/KCEJf8rOgg
Maischberger @maischberger
86K Followers 481 Following 📺 Dienstag & Mittwoch um 22:50 im Ersten, es twittert die Redaktion | https://t.co/QuIFvwCNxF | https://t.co/OOZzZrwWym | https://t.co/ef4nB6M2k5
Wolfgang Kubicki @KubickiWo
66K Followers 6 Following Offizielle Seite von Wolfgang Kubicki. Aktivitäten von WK und Team Kubicki (TK).
JD Vance @JDVance
4.7M Followers 1K Following Christian, husband, dad. Vice President of the United States.
sparbuchfeinde @sparbuchfeeinde
526 Followers 6K Following 🚀Finanzwissen für Dich📈 Börse | Aktien | Dividenden 📚Wirtschaftspolitik 🎓Business School | 70.000 Abonnenten auf Instagram
sparbuchfeinde @sparbuchfeinde
32K Followers 88 Following 🚀 Finanzwissen für Dich 📈 Börse | Aktien | Dividenden 📚 Wirtschaftspolitik 🎓 Business School | 85.000 Abonnenten auf Instagram
Trends for United States
You might like
