Levi Waldron @LeviWaldron1
Professor of Biostatistics at CUNY SPH, #rstat / @Bioconductor enthusiast, cancer genomics/metagenomics, proud #HPV #OSCC cancer survivor. @lwaldron@fosstodon waldronlab.io New York, USA Joined October 2012-
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This week I had the honor to present at @lcolladotor team journal club a summary of "Evaluation of software impact designed for biomedical research" Congratulations to @mirnas22, @LeviWaldron1, @jtleek, @avamariehoffman, @jamesaeddy! Check it out: youtube.com/watch?v=13PatN…
Hearing a young scientist get excited about a publicly maintained database kind of makes it all feel worthwhile…
Hearing a young scientist get excited about a publicly maintained database kind of makes it all feel worthwhile…
Very kind blog post from my @outreachy mentee @PeaceSandy3 about the journey to closing her first issue on an open-source software project! peacesandy.hashnode.dev/my-outreachy-i…
The March #MVIF program is now confirmed!🥳 Full program with abstracts➡️microbiome-vif.org/en-US/-/future… Registration➡️events.ringcentral.com/events/microbi…
The March #MVIF program is now confirmed!🥳 Full program with abstracts➡️microbiome-vif.org/en-US/-/future… Registration➡️events.ringcentral.com/events/microbi…
How did @MicrobiomeVIF start and why? 🦠🌍 Hear it from the voice of @LeviWaldron1, who envisioned it together with @nsegata in 2020. youtube.com/watch?v=x9rxe-… If you can, consider supporting #MVIF through our crowdfunding or in the many other ways listed in the🧵⬇️ Thanks🌷
Will be following @Bioconductor wherever it posts :)
Will be following @Bioconductor wherever it posts :)
In NEW @NatureRevMicro article, @fasnicar Andrew Maltez Thomas @andrea_whatever @LeviWaldron1 and @nsegata cover the aspects that they consider most important to enable microbiologists to use machine learning. nature.com/articles/s4157… 1/2
Machine learning for microbiologists @NatureRevMicro by @fasnicar Andrew Maltez Thomas @andrea_whatever @LeviWaldron1 and @nsegata @cibiocm nature.com/articles/s4157…
Great to hear such enthusiasm from new bugsigdb.org contributor and @outreachy applicant @ChineseChikki
Great to hear such enthusiasm from new bugsigdb.org contributor and @outreachy applicant @ChineseChikki
Proud to be a part of this and to be working with such capable and motivated students from all corners of the earth.
Proud to be a part of this and to be working with such capable and motivated students from all corners of the earth.
Taking requests for human + non-human microbiome studies to add to bugsigdb.org , any sequencing technology and strategy!
Taking requests for human + non-human microbiome studies to add to bugsigdb.org , any sequencing technology and strategy!
What a week 🎇 The #bugsigdb @outreachy contribution started with a GREAT interest from more than 30 applicants from all around the world! "Curating microbiome studies brings challenges and fun, especially in a such supportive community"
ICYMI, out now in @NatureBiotech: BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures @LeviWaldron1 @chuttenh @nsegata nature.com/articles/s4158…
more NEWS I'll be responsible also for curation & global communication of the **curatedMetagenomicData resource**, incl samples w/ standardized processing & manually-curated metadata, led by @nsegata @LeviWaldron1 @paolo_manghi @epasolli @_schifferl See waldronlab.io/curatedMetagen…
Welcome @svetlana_up great to have you on board for bugsigdb!
Welcome @svetlana_up great to have you on board for bugsigdb!
BugSigDB is a new community-led DB by @LeviWaldron1 @chuttenh & @nsegata containing microbial signatures from published differential abundance studies. It enables to compare between studies & curated signatures for composition, diversity & disease analysis nature.com/articles/s4158…
Ming "Tommy" Tang @tangming2005
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353 Followers 680 Following PhD candidate in Genomics Data Science @ University of Galway | Musicals, tea and cancer genomics! | She/Her 🏳️🌈NIAID Funding @NIAIDFunding
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274 Followers 1K Following Science, biology, bioinformatics, genomicsEzgi Ozkurt @ezgi_evol
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1K Followers 953 Following@cibiocm @prebiomics @Nature_NPJ @ITI_org @ERC_Research Congratulations on the publication! A colleague of mine curated this paper on bugsigdb, bugsigdb.org/Study_877 and we had a light discussion of how this study provides fresh insights into the dental microbiome and impact on patient care. Keep up the excellent research 🙌🏾
@Praise_Agbetuyi Thank you, Praise, for your contribution! We do hope you’ve been enjoying #BugSigDB-ing. cc @outreachy @LeviWaldron1
This week I had the honor to present at @lcolladotor team journal club a summary of "Evaluation of software impact designed for biomedical research" Congratulations to @mirnas22, @LeviWaldron1, @jtleek, @avamariehoffman, @jamesaeddy! Check it out: youtube.com/watch?v=13PatN…
🔬 Struggling to find comprehensive microbial signatures for your research? Guess what! With BugSigDB.org you can access a comprehensive database of microbial signatures from published studies, along with study design, geography, health outcomes, and experimental metho
A huge thanks to all of our speakers and attendees for making the meeting so interesting! Today your Atlantic #MVIF hosts were @SerenaManara @LeviWaldron1 @svetlana_up @cpavloud 🌍 #nomvifwithoutproblems See you next month! microbiome-vif.org/en-US/
@Azufre451 @NaokiHa07190724 @MicrobiomeVIF @SerenaManara @LeviWaldron1 @nsegata Thx! Moreno. I think Naoki will contact you.
@lyresc @Azufre451 @MicrobiomeVIF @SerenaManara @LeviWaldron1 @nsegata Thank you, Moreno, Yong! I will submit an abstract for a selected talk via the submission system.
@pawel_labaj @KiZielinska @Tomasz_Lab @systemnaBio @MCB_UJ @mason_lab @metasub @TrueHoopsNY @JaBilinski Congrats, Pawel! I'm pretty sure that #MVIF community would love to hear more about your approach. Feel free to join us! Abstract submission for April is still OPEN docs.google.com/forms/d/e/1FAI… For any Qs, DM @SerenaManara @LeviWaldron1 @nsegata or me
@svetlana_up @KiZielinska @Tomasz_Lab @systemnaBio @MCB_UJ @mason_lab @metasub @TrueHoopsNY @JaBilinski @SerenaManara @LeviWaldron1 @nsegata btw. we have just announced a new @CAMDA_conf challenge: the #Gut #Microbiome based #HealthIndex. Read more at camda.info Feel free to spread among #MVIF community @SerenaManara @LeviWaldron1 @nsegata
Our new preprint inspired by Klas Udekwu & concept of #TheatherOfActivity biorxiv.org/content/10.110… @KiZielinska has developed #healthy gut #microbiome index exploiting functional approach and synergies @Tomasz_Lab @systemnaBio @MCB_UJ @mason_lab @metasub @TrueHoopsNY @JaBilinski
(Online) Moments like this are p r i c e l e s s Just another @outreachy co-mentoring day w/ @LeviWaldron1, Chloe, Esther @folakunmiesther, Chioma @oma_bekee and Peace @PeaceSandy3
@svetlana_up @KiZielinska @Tomasz_Lab @systemnaBio @MCB_UJ @mason_lab @metasub @TrueHoopsNY @JaBilinski @SerenaManara @LeviWaldron1 @nsegata Thx! We will have a look with @KiZielinska
@LeviWaldron1 @outreachy Thank you so much Sir Really excited to be mentored by you
Spot me in the first row! Time does fly🥹 I’m going to miss being an Outreachy intern so much. I’m glad to still have my mentor @svetlana_up in my corner❤️
Today is the last day of the December 2023 internship! For the past 3 months, these amazing folks have contributed to several #OpenSource & #OpenScience projects. They have learned and grown in their careers, both technically & non-technically. Congratulations to you all! 🥳
From 2022, within #microTOUCH (@ERC_Research) project, we’ve been studying how the human gut microbiome is transmitted & how transmission shapes microbiome-associated diseases. More details here: cordis.europa.eu/project/id/101… Logo: @nigrelex 1/3
How did @MicrobiomeVIF start and why? 🦠🌍 Hear it from the voice of @LeviWaldron1, who envisioned it together with @nsegata in 2020. youtube.com/watch?v=x9rxe-… If you can, consider supporting #MVIF through our crowdfunding or in the many other ways listed in the🧵⬇️ Thanks🌷
@outreachy Woohoo 🚀 we already welcomed more than 20 contributors of Microbiome Study Curation project! We look forward to #bugsigdb-ing together! @LeviWaldron1, Chloe, Esther @folakunmiesther, Chioma @oma_bekee, Peace @PeaceSandy3
NRG-HN005 results of scheduled interim futility analysis comparing experimental arm to control arm for randomized phase II portion of the study showed that the experimental arm didn't achieve non-inferiority threshold per statistical analysis plan. conta.cc/3DRvsu2
A busy week, talking for hours to reporters, days of additional work for them, preparing a workshop, and giving a talk - all things that I did for free. I am so grateful for my @Patreon supporters, who provide a basic income, so I can continue to do this. patreon.com/elisabethbik
I have a task but I am too tired to open my laptop and work. What is happening to me. No be juju be that. #task #developer @typescript