Israel Barrantes (@[email protected]) @Limenian
Research Group Translational Bioinformatics @ #IBIMARostock, Universitätsmedizin Rostock. Infection Research, Microbiomes, Aging, Drug Repositioning scholar.google.de/citations?hl=e… Rostock, Germany Joined February 2013-
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Article alert #IBIMARostock: @meisener_, @RiccardoSecci5, @SalemSueto et al. Computational identification of natural senotherapeutics that mimic dasatinib from expression data @SciReports rdcu.be/dBlpr Huge congrats for the achievement! @unirostock #DrugRepositioning
There is no border for science. Let's support each other. Empower Dreams: Bioinformatics Scholarship Fund for Ukrainian Scholars (please donate and RT) betterunite.com/bioinformatics… @BioinforUA @serghei_mangul @STOPlabPI @michal_gdula @rafalab @wolfgangkhuber
In press from our team: High-dose polyphenol-rich nutrition improves lipid and inflammation profiles and triggers apoptotic signaling in healthy older adults. By @RiccardoSecci5, A. Hartmann et al. @AgingBiology01 @unirostock #IBIMARostock agingcelljournal.org/Archive/Volume…
Congratulations to our #IBIMARostock alumnus Dr. @SalemSueto on successfully defending his PhD thesis @unirostock! His works on drug repositioning & transcriptomics formed the foundation for several collabs. Here's to a well-deserved title and continued success🥂
Our #IBIMARostock colleague @meisener_ brought her early findings on the effects of a #strawberry rich- diet in the gut #microbiome of healthy elderly adults to the #EESMicrobiome 2023. Hope you didn't miss it! @EMBLEvents @unirostock #UniversitätsmedizinRostock #ageing
Find out more about longevity interventions with polyphenols and bioinformatics, their relation to epigenetic rejuvenation & more: Our #IBIMA colleague Georg Fuellen is joining the Longevity Summit Dublin (Aug 17-20th), longevitysummitdublin.com/speakers @aubreydegrey @LongevityEVF
Article alert: The 2-methylpropene degradation pathway in Mycobacteriaceae family strains. Steffen Helbich, Israel Barrantes, et al. Collaboration with @Uni_Stuttgart @Helmholtz_HZI @FraunhoferIGB doi.org/10.1111/1462-2… @Environmicrobi
High-dose Polyphenol-rich Nutrition Improves Lipid and Inflammation Profiles and Triggers Apoptotic Signaling in Healthy Elderly People (the ErdBEHR Study) medrxiv.org/cgi/content/sh… #medRxiv
New article @Micro_MDPI from our team in collaboration with the @BNITM_de, @UKEHamburg, #Bundeswehrkrankenhaus #Hamburg, #UnimedizinRostock @unirostock Inst Microbiol et al: Gut #Microbiome of an #Indigenous Agropastoralist Population of #Colombia mdpi.com/2076-2607/11/3…
Our latest work coauthored with the #IBIMA-#Rostock team: "Gene #coexpression analyses of #healthspan across multiple species" academic.oup.com/nargab/article… #nargab #NAR_Genomics_and_Bioinformatics @OUPAcademic
@Limenian Hi! here is your unroll: threadreaderapp.com/thread/1595491… Talk to you soon. 🤖
New article from our team in collaboration with the Dept Gastroenterology, the Inst Exp Surgery and the Inst Microbiol here at the #UnimedizinRostock @unirostock #microbiome
New article from our team in collaboration with the Dept Gastroenterology, the Inst Exp Surgery and the Inst Microbiol here at the #UnimedizinRostock @unirostock #microbiome
Now available at #IntJMolSci our latest publication: #Metagenomic Sequencing for the #Diagnosis of #Plasmodium spp. with Different Levels of Parasitemia in EDTA Blood of #Malaria Patients doi.org/10.3390/ijms23… @MDPIOpenAccess
@Limenian Salam, please find the unroll here: threadreaderapp.com/thread/1519826… Talk to you soon. 🤖
Our latest contribution with the #microbiome analysis for the #Baltic #biocrust #diversity study by Karin Glaser and team, is now available @FrontMicrobiol frontiersin.org/articles/10.33…
Our paper on the bioinformatic identification of dasatinib senotherapeutic analogs is now available @biorxivpreprint. Congrats to our PhD student @meisener_ for her efforts #drugrepurposing #drugrepositioning #aging
Our paper on the bioinformatic identification of dasatinib senotherapeutic analogs is now available @biorxivpreprint. Congrats to our PhD student @meisener_ for her efforts #drugrepurposing #drugrepositioning #aging
Glad to contribute to this review on #TransferLearning methods applied to the prediction of clinical outcomes from preclinical molecular data, now available at Briefings in Bioinformatics @OUPAcademic doi.org/10.1093/bib/bb… #MachineLearning #ArtificialIntelligence
ERRORES que incluso #dataScientist expertos cometen 1. 🚫No realizar una investigación reproducible💀 “Every analysis you do on a dataset will have to be redone 10-15 times before publication. Plan accordingly” Trevor Branch buff.ly/3KYe3RJ #dataScience #HorrorStats #data
Got an RNA-seq dataset with 50, 100, 200+ samples? Plug it into a differential expression tool and hope for the best? No! You need to consider QC, EDA, and modeling technical variation, or else risk generating spurious results. A thread on papers, methods, and best practices:
Recent reviewer nonsense: "Add p-values, as this is for a clinical audience" "Non-linearity is confusing; re-do analyses at clinically meaningful cut-points" "Something's wrong if complex stats methods are needed" "Reduce methods section - it's distracting for clinical readers"
Johnnie Strozier @StroziJohn
51 Followers 5K Following
Chin Bomzer @ChinB90871
87 Followers 5K Following
Ines Karas @InesKaras37158
61 Followers 5K Following
Martin Mulinge @mulinge78
2K Followers 3K Following HIV scientist| UoN Lecturer| Passionate about molecular cloning & virology| Getting the basics right| #Microbiome| #Metabolomics| #HumanMilkOligosacharides
Konstantina Zafeiropo.. @zaf_kon
154 Followers 370 Following 🍎 Dietitian interested in the role of gut microbiota in human health & disease 👩🏼🔬 PhD candidate @amsterdamumc @GutResearch @GrowthITN 📃 Editor @GMfHx
Melike Dönertaş @melikedonertas
4K Followers 1K Following Junior Group Leader @LeibnizFLI prev @EMBOFellows @MPIAGE @Cambridge_Uni @EMBLEBI @METU_ODTU @iscb @ekoevoder #aging #bioinformatics #microbiome #rstats
Stefanie Prast-Nielse.. @NielsPrast
285 Followers 207 Following Associate Professor (Docent) in Medical Microbiology using Multiomics, Machine Learning and Data Integration @CTMRBio, Karolinska Institutet
Kateryna Pantiukh �.. @KPantiukh
480 Followers 539 Following 🦠 PhD student at @ESTbiobank and @genomicstartu 🧬 Co-founder @sci_bear company
Carlos @Csaucar
30 Followers 359 Following
EMBLMicrobesTT @EmblMicrobesTT
414 Followers 250 Following Microbial Ecosystems Project from @embl Dissecting microbial functions and communities to understand how microbes interact with their environments.
Jieming @jiemingchu
150 Followers 2K Following
Dante Perea @DantePereaCom
164 Followers 537 Following No problem can stand the assault of sustained thinking. 🧬AI applied to longevity biotech? ➡️ Talk to me🗣️ Startups lover ✨ 1 exit and counting. #ODLB2 #LBF
Ric Asselstine @ricasselstine
1K Followers 4K Following longevity, quantum, ai, planet, design, geeq. Just trying to understand. https://t.co/ZYzKs4I75P helping with that 🙏
Magpier 🍞🐝🎖�.. @Magpier_
281 Followers 1K Following Third semester biotechnology student interested in the chain of aging science research for cell preservation and ultimately its immortality. Transbiologist.
Julia Varela @JuliaVarela__
12K Followers 3K Following Periodista, presentadora, reportera, locutora, comentarista @eurovision_tve Spanish #esc commentator @comandotve @duosincreibles @rne #TeCríoMucho🎙️Mamá x 2 🐣
Nicholas Ollberding @Nick10243
88 Followers 219 Following Associate Professor @CincyChildrens Epidemiology|Microbiome|Biostatistics|Predictive Modeling|Views are my own
María (Maria del Mar.. @MariadelMarTom
11K Followers 7K Following MD Microbiologist(CHUAC-SERGAS)PhD-PI Researcher (INIBIC-SERGAS);#microbiology #phages #tolerantcells #AMR #persistercells #microTM #inibic #chuac 👩🔬🧫🦠🧬
Dr. Jennifer Fouquier @JTFouquier
1K Followers 1K Following Lozupone Lab @CUAnschutz. Also traveler, hiker, & big (er..small) foodie. #microbiome #firstgen
Ryan Urbanowicz, PhD @DocUrbs
952 Followers 1K Following Assistant Professor of Computational Biomedicine @CedarsSinaiMed #MachineLearning #ArtificialIntelligence #Datascience #AutoML #Medicine 🏳️🌈
Theodor Sperlea @TSperlea
283 Followers 1K Following Doing bioinformatics, genetics and ecology of microorganisms. Asking myself how Bacteria, Archaea and tiny Eukaryotes keep ecosystems going. And why.
Robyn Wright @RobynJWright
848 Followers 797 Following • Microbial ecologist (human microbiome/plastisphere) • Postdoc @DalhousieU 🇨🇦 • @WarwickLifeSci PhD 🇬🇧🇪🇺 • 🐶📷🌊🏃♀️🚲 • she/her •
Laura Palma Medina @LauraMPalmaM
521 Followers 880 Following Assistant Professor at @CIM_Sweden @karolinskainst Passionate about host-pathogen interactions and big data. Currently digging deep on sepsis and NSTI.
Alex Sanchez Pla @sanplaale
380 Followers 873 Following Happy husband, father and grandfa; Bioinfostatistician; Run:walker
Rob Lalonde @HPC_Cloud_Rob
4K Followers 5K Following CCO at @SeqeraLabs / @nextflowio Doing cool #Nextflow infrastructure stuff in #bioinformatics. Helping startups with going to market. Tweets are my own.
Dokyoon Kim @dokyoon_kim
775 Followers 682 Following Associate Professor of Informatics, @PennMedicine Director, Center for AI-Driven Translational Informatics Associate Director of Informatics, @_ImmuneHealth
Boobalan Gopu @BoobalanGopu
80 Followers 1K Following Scientist @csir_iiim. Asst. Prof. @AcSIR_India. Working on Colorectal Cancer and Wnt/β-catenin pathway. Tweets are personal.
Pablo Rodríguez Mier @PabloRMier
994 Followers 1K Following Scientist at @saezlab, @uniklinik_hd, Heidelberg University. Mathematical modeling / ML & AI for biological systems. @[email protected]
Giulia Abate @GiuliaAbate17
84 Followers 426 Following Post-doc @unibs_official, Università degli Studi di Brescia Working on Alzheimer's Disease, blood-biomarkers discovery and novel nutriactive molecules 🧠💉🔬💡
Salem Sueto @SalemSueto
5 Followers 36 Following Curious by nature and BioInformatician for profession.
Riccardo Secci @RiccardoSecci5
11 Followers 67 Following PhD student in bioinformatics at the University of Rostock and IBIMA team member
intimendez @intimendez1
710 Followers 3K Following My interests are food recipes in general, desserts. Reading and travel
Michał Burdukiewicz @burdukiewicz
413 Followers 916 Following #bioinformatics | #machineLearning | #dataScience | #RStats | @whyRconf
AviMaayan @AviMaayan
2K Followers 785 Following Professor, @IcahnMountSinai; Director, https://t.co/Iz9W1ez5xO #bioinformatics; Principal Investigator, @MaayanLab @BD2KLINCSDCIC
Franziska Meiners @meisener_
16 Followers 51 Following PhD student in translational bioinformatics; microbiome analysis & aging research -- I'm very excited about the future
PROjECT 21 @PROjECT2120
14 Followers 124 Following
Prasath Lab CCHMC @PrasathLab
1K Followers 5K Following AI Lab at @CincyInformatix @CincyChildrens. Deep Learning, Image Processing, Data Science, Bioinformatics. 1st gen. He/Him.
Dora Phan @dp_phan
4 Followers 25 Following
Amelia Palermo Briosi.. @Amelia_Palermo
1K Followers 995 Following Systems biology of metabolism & drug discovery research @UCLA, music, nature, 🏊♀️, contributor on innovation in drug discovery and AI @forbes
Marco Kai @marco_am_meer
228 Followers 536 Following Biologist 🧫🔬 | Father 👨👦👦 | Runner 🏃 | Scientific Writer 📝 | Searching…
Special One @GrandeMouReal
1K Followers 2K Following Socio madridista. Mourinho tenía razon.#JMTR. En el lado bueno de la historia.
Andrei Prodan @AndreiProdan12
197 Followers 1K Following Head of Data at Single Cell Discoveries. scRNAseq and Bioinformatics. Hiker and traveller. Opinionated, skeptical, curious about the world.
Matthias Scholz @panphlan
653 Followers 551 Following Senior Researcher in Bioinformatics | strain-level metagenomics | gut microbiome & human health | Wolbachia bacterial evolution
Holly K Arnold ░ @HollyKArnold
950 Followers 973 Following Enhancing healthspan by reverse engineering microbiomes | Assistant Professor (Sr Research) OSU | ⚕️| 🏳️🌈 |✊🏿✊🏾✊🏽 | 💛🤍💜🖤 | 🐝 | Views Mine
Philipp Bayer @PhilippBayer
8K Followers 5K Following Interpretable ML/genomics of ocean eDNA for better ocean health monitoring at @minderoo OceanOmics! He/Him. Also at @[email protected]
Mike Lee @AstrobioMike
4K Followers 4K Following Former musician-wannabe. Current micro. ecologist/bioinformatician @NASA 👽 | Bioinf-beginners go to https://t.co/as7hNIgYYg | For phylogenomics, GToTree :) | he/him
Bora Uyar @borauyar
512 Followers 1K Following Bioinformatics Scientist at Max Delbruck Center for Molecular Medicine @MDC_Berlin, @BIMSB_MDC, @arcas_ai. alumnus of @embl, @SFU, @sabanciu
Oliver Schwengers �.. @oschwengers1
923 Followers 990 Following 🦠🧬🖥️ Microbial bioinformatics, WGS bacteria, plasmids, PostDoc @JLUGiessen, father of 2, husband, astrophotographer
dclopez @dianalopez430
240 Followers 1K Following Bióloga. Amante de las aves Ph.D. Ciencias Agrarias y del Medio Natural. Apasionada por la bioinformática.
Marina Manrique @marina_manrique
849 Followers 527 Following Computational biologist. Interested in the relationship between microbiome and cancer.
Max Planck Society @maxplanckpress
190K Followers 2K Following Official account of the Max Planck Society. Devoted to basic research in #physics #astronomy #chemistry #biology #mathematics #socialsciences & the #humanities
Mike Inouye @minouye271
7K Followers 451 Following Computational biologist. Geriatric millennial. American Australian. Professor @Cambridge_Uni. Director of Data Sciences @BakerResearchAu. Director @CamBakerSGI.
AgingBiology @AgingBiology01
549 Followers 135 Following Highly significant research on biology of aging and longevity. Bridges from basic molecular mechanisms to in vivo aging biology. By scientists for scientists.
GBM e.V. @GBM_eV
1K Followers 480 Following Twitter account of the German Society for Biochemistry and Molecular Biology e.V. Impressum: https://t.co/fh7S05bUz6
ThaissLab @ThaissLab
2K Followers 140 Following @ChristophThaiss research lab @Penn @PennMicro, studying host-environment interactions in human disease.
NFDI4Microbiota 🦠 .. @NFDI4Microbiota
926 Followers 267 Following Mastodon: @[email protected]; National Research Data Infrastructure for the Research of Microbiota, #Microbiology #FAIR #OpenScience #NFDI
Nicola Segata @nsegata
5K Followers 905 Following Professor at @CIBIO_UniTrento and head of the @cibiocm lab working on metagenomics, the human microbiome and computational biology.
Konstantina Zafeiropo.. @zaf_kon
154 Followers 370 Following 🍎 Dietitian interested in the role of gut microbiota in human health & disease 👩🏼🔬 PhD candidate @amsterdamumc @GutResearch @GrowthITN 📃 Editor @GMfHx
Biomarkers of Aging C.. @agingbiomarkers
1K Followers 296 Following Establishing reliable biomarkers of aging for longevity interventions. Promoting relevant research and updates from Consortium members & contributors.
CSB, ETHZ @CSB_ETHZ
201 Followers 75 Following Computational Systems Biology, CSB group at Department of Biosystems Science and Engineering, ETH Zürich, led by Jörg Stelling
Carlos @Csaucar
30 Followers 359 Following
Melike Dönertaş @melikedonertas
4K Followers 1K Following Junior Group Leader @LeibnizFLI prev @EMBOFellows @MPIAGE @Cambridge_Uni @EMBLEBI @METU_ODTU @iscb @ekoevoder #aging #bioinformatics #microbiome #rstats
Stefanie Prast-Nielse.. @NielsPrast
285 Followers 207 Following Associate Professor (Docent) in Medical Microbiology using Multiomics, Machine Learning and Data Integration @CTMRBio, Karolinska Institutet
Kateryna Pantiukh �.. @KPantiukh
480 Followers 539 Following 🦠 PhD student at @ESTbiobank and @genomicstartu 🧬 Co-founder @sci_bear company
EMBL Events @EMBLEvents
27K Followers 1K Following We are @embl events. 🧬 Join our world-class courses, conferences and workshops at the forefront of molecular life science and its applications. 👩🏻🔬🔬
VPH Institute @VPH_Institute
2K Followers 2K Following Non-profit whose mission is to ensure the Virtual Physiological Human is fully realised, universally adopted, and effectively used both in research and clinic.
EMBLMicrobesTT @EmblMicrobesTT
414 Followers 250 Following Microbial Ecosystems Project from @embl Dissecting microbial functions and communities to understand how microbes interact with their environments.
Julia Varela @JuliaVarela__
12K Followers 3K Following Periodista, presentadora, reportera, locutora, comentarista @eurovision_tve Spanish #esc commentator @comandotve @duosincreibles @rne #TeCríoMucho🎙️Mamá x 2 🐣
The National Institut.. @NIHAging
25K Followers 670 Following Official X account of NIH's National Institute on Aging. Dedicated to improving the health of older adults through research. Privacy: https://t.co/6XA3jNUXwc
Gladyshev Lab @gladyshev_lab
4K Followers 21 Following Research Lab @harvardmed and @brighamwomens working to extend Lifespan and Healthspan.
QIIME 2 @qiime2
3K Followers 0 Following Announcements, tech support, community & discussion can always be found on the QIIME 2 Forum (https://t.co/U2iHan1zR9).
Integrated Microbial .. @IMG_DATA
754 Followers 61 Following Official account of @jgi's IMG/M data system (at @BerkeleyLab) supporting annotation, analysis and distribution of microbial genome & microbiome datasets.
Elizabeth Prommer @Prommer_Elli
1K Followers 396 Following Rector of the University of Rostock. In my former life Professor for communication and media studies. Here not private anymore
The German Human Geno.. @GHGA_DE
1K Followers 191 Following The GHGA Consortium implements a national infrastructure for secure management of genomic data in Germany. @[email protected]
Tarini Shankar Ghosh @tarini_ghosh
591 Followers 342 Following Assistant Professor in Computational Biology at IIIT-Delhi ... Loves data .. Loves microbes 🙂🙂🙂.. Formerly APC Microbiome Ireland
Nicholas Ollberding @Nick10243
88 Followers 219 Following Associate Professor @CincyChildrens Epidemiology|Microbiome|Biostatistics|Predictive Modeling|Views are my own
María (Maria del Mar.. @MariadelMarTom
11K Followers 7K Following MD Microbiologist(CHUAC-SERGAS)PhD-PI Researcher (INIBIC-SERGAS);#microbiology #phages #tolerantcells #AMR #persistercells #microTM #inibic #chuac 👩🔬🧫🦠🧬
Pac Sym Biocomputing @PacSymBiocomp
910 Followers 16 Following Pacific Symposium on Biocomputing (PSB) is an international conference. Researchers exchange their results and address open issues in computational biology.
Sean Gibbons 🦠💩.. @gibbological
5K Followers 2K Following microbiome science | associate professor @isbsci | affiliate prof @UWBioE & @uwgenome | @uwescience & @AMIposts fellow | systems bio of 💩 🦠 | 🏳️🌈 he/him
eLife - the journal @eLife
163K Followers 744 Following The funder-researcher collaboration and open-access journal for research in the life and biomedical sciences | @eLifeCommunity
hutlab @hutlab
3K Followers 221 Following The Huttenhower Lab at the Harvard T.H. Chan School of Public Health: microbial community function and human microbiome population health; Moderator @JTNearing
Dr. Jennifer Fouquier @JTFouquier
1K Followers 1K Following Lozupone Lab @CUAnschutz. Also traveler, hiker, & big (er..small) foodie. #microbiome #firstgen
Ryan Urbanowicz, PhD @DocUrbs
952 Followers 1K Following Assistant Professor of Computational Biomedicine @CedarsSinaiMed #MachineLearning #ArtificialIntelligence #Datascience #AutoML #Medicine 🏳️🌈
Theodor Sperlea @TSperlea
283 Followers 1K Following Doing bioinformatics, genetics and ecology of microorganisms. Asking myself how Bacteria, Archaea and tiny Eukaryotes keep ecosystems going. And why.
Karls Erlebnis-Dorf @KarlsErdbeerhof
7K Followers 691 Following Hier zwitschert Karls Erlebnis-Dorf 🍓#authentisch #kreativ #liebevoll #natürlich #familiär #grosszügig #augenzwinkernd
Robyn Wright @RobynJWright
848 Followers 797 Following • Microbial ecologist (human microbiome/plastisphere) • Postdoc @DalhousieU 🇨🇦 • @WarwickLifeSci PhD 🇬🇧🇪🇺 • 🐶📷🌊🏃♀️🚲 • she/her •
George Bouras @GB13Faithless
686 Followers 907 Following Bioinformatics @UniofAdelaide - phages, microbes and more
American Aging Associ.. @americanaging
5K Followers 124 Following The official Twitter account of AGE. #geroscience #aging Follow our sister page @GeroScienceAGE to stay up to date on our association's scientific journal!
Laura Palma Medina @LauraMPalmaM
521 Followers 880 Following Assistant Professor at @CIM_Sweden @karolinskainst Passionate about host-pathogen interactions and big data. Currently digging deep on sepsis and NSTI.
Jake Warner @ScientistJake
596 Followers 390 Following Assistant Professor at the University of North Carolina Wilmington.
Alex Sanchez Pla @sanplaale
380 Followers 873 Following Happy husband, father and grandfa; Bioinfostatistician; Run:walker
Rosana Ferrero 📈�.. @RosanaFerrero
41K Followers 5K Following 📊 PhD, Statistics + Data Science + Machine Learning + Biology/Ecol 😉 Haz que tus datos sean útiles! 🎓 Directora académica y Docente 🏢 Consultora 💙 #RStats
Microbiome Signatures @crc1371
734 Followers 600 Following Collaborative Research Centre - CRC 1371 - interdisciplinary consortium - 80 researchers - microbiome signatures - inflammation - cancer - digestive tract
Mihaela van der Schaa.. @MihaelaVDS
8K Followers 420 Following John Humphrey Plummer Professor of Machine Learning, Artificial Intelligence and Medicine @Cambridge_Uni, Fellow @TuringInst
Rob Lalonde @HPC_Cloud_Rob
4K Followers 5K Following CCO at @SeqeraLabs / @nextflowio Doing cool #Nextflow infrastructure stuff in #bioinformatics. Helping startups with going to market. Tweets are my own.
Center for Microbiome.. @MITMicrobiome
4K Followers 150 Following CMIT. Accelerating development of microbiome-based therapies @MIT and beyond #microbiome #innovation #healthcare
MicrobiomeSupport Ass.. @MicrobiomeEU
4K Followers 629 Following Promoting microbiome understanding and applications as key drivers on food security, One Health and human well-being
Dokyoon Kim @dokyoon_kim
775 Followers 682 Following Associate Professor of Informatics, @PennMedicine Director, Center for AI-Driven Translational Informatics Associate Director of Informatics, @_ImmuneHealth
Thomaz Bastiaanssen, .. @Thomazsan
881 Followers 551 Following Postdoctoral researcher at APC microbiome Ireland @Pharmabiotic. bioinformatics | microbiome | theoretical ecology | multi-omics @biothomaz.bsky.social he/him
Pablo Rodríguez Mier @PabloRMier
994 Followers 1K Following Scientist at @saezlab, @uniklinik_hd, Heidelberg University. Mathematical modeling / ML & AI for biological systems. @[email protected]
We are excited to announce our new study in @NatureMedicine on microbial composition in colorectal cancer (CRC) patients in Flanders, Belgium🇧🇪, integrating data from fifteen other studies. @ancientOmics nature.com/articles/s4159… Here are the key findings: 🧵👇
I've worked tirelessly on cracking this problem with generations of students. It’s an extremely challenging area of ML and seeing it come closer to clinical use, where it will empower clinicians & patients alike, is very satisfying: nature.com/articles/s4159… #AI #PatientEmpowerment
a single line of unix code to merge RNAseq counts file: awk 'NR == 1 || FNR > 1{print $0"\t"FILENAME}' *tsv | sed '1 s/sample1.tsv/sample/' | sed 's/.tsv//' | csvtk -t spread -k gene -v count #unix youtube.com/watch?v=3SW4zo…
The future of gut microbiome manipulation in medicine laid out here is remarkable sciencedirect.com/science/articl… @Will_fusco @Elinav_Lab @gianluca1aniro @GiovanniCammar9 @HepatologyHugh @LancetGastroHep
Quantitative text analysis is a range of computational methods to analyze text data using statistically and mathematically. Find out more in our latest Primer, free to access throughout April: go.nature.com/43RDgb9 @UvA_Humanities & @AWLassche
In the age of complex models, simple linear/logistic regression stands out again aligning with our @PLOSCompBiol paper: doi.org/10.1371/journa…!😀 New paper by @antagomir reaffirms the notion of going back to the basics: arxiv.org/abs/2404.02691 #Microbiome #Omics #DataScience
my latest movie pitch: tenured academics steal the undergrad thesis of a dutch hr manager for an event transportation company, are subsequently buttonholed by him when they attend a wedding on an isolated volcanic island. (it's a murder mystery)
Dan Ariely and Francesca Gino appear to have directly plagiarized one of their undergraduate's thesis's in their 2016 book. I actually interviewed Ariely about his alleged-cheating a few months ago. And my interview has aged well. youtu.be/qkjppudiIHg
Sad that we can't trust @OpenAI and other commercial AI companies :( medium.com/enrique-dans/a… #privacy #security #ethics #artificialintelligence #chatgpt
📊 Cómo crear gráficos estilo BBC Libro de cocina de periodismo visual y de datos de la BBC para gráficos R buff.ly/2RWsI3Y #analytics #datascience #stats #data #dataviz #datavisualization #programming #code #python
📊 TOP 50 visualizaciones principales de ggplot2: la lista maestra (con código R completo) buff.ly/3xzqQZ6 #dataviz #datavisualization #datascience #stats #analytics
Hey authors, peer-reviewers, editors, & production teams, you might want to be sure ChatGPT text is removed from your scientific publications.... HT @randal_olson #research #scitwitter #chatgpt
Code Club is back! Be sure to check out the latest episode where I use my git history and ImageMagick to create a gif of 16 months worth of drought data collected across the globe. Conda/Mamba and bash also make cameos youtu.be/B4tNS5CJtgM
📅 Gearing up for our next in-person event - #NextGenOmicsUS24. Join us in Boston & discover how TileDB is reshaping the landscape for #multiomics research, tackling data challenges in #populationgenomics, #singlecell, & #biomedicalimaging. Let's meet! hubs.la/Q02pkBjk0
There is no border for science. Let's support each other. Empower Dreams: Bioinformatics Scholarship Fund for Ukrainian Scholars (please donate and RT) betterunite.com/bioinformatics… @BioinforUA @serghei_mangul @STOPlabPI @michal_gdula @rafalab @wolfgangkhuber
@DrCJ_Houldcroft @aero_anna Nice! I've managed to make a few diagrams in that style - never been able to use one seriously though. Good thing about Frontiers is that it tells you who to blame:
@DrCJ_Houldcroft @bdelloid @aero_anna This one almost as good frontiersin.org/files/Articles…
Erm, how did Figure 1 get past a peer reviewer?! frontiersin.org/articles/10.33… H/T @aero_anna
reproducibility is hard: Computational reproducibility of Jupyter notebooks from biomedical publications buff.ly/3OcXiWN
@spoonedher Python should not exist for any reason. Literal garbage
Warm welcome to #ECCB2024 in Finland! The 23rd European Conference on Computational Biology will be hosted by @UniTurku and @CSCfi in the oldest city of Finland, Turku, on 16-20 September 2024. Check out the website eccb2024.fi and get to know the key speakers!
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