SeqAn @SeqAnLib

High performance C++ template library for the analysis of biological sequences. seqan.de Joined January 2011

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SeqAn @SeqAnLib

2 years ago

We have just released a new Version of our C++ command line parsing lib: Sharg 1.1.0 🚀 Check it out on Github: github.com/seqan/sharg-pa…

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🎉 Sharg parser 1.0.0 released 🎉 We are thrilled to announce the first release of the SeqAn Sharg parser. The Sharg parser is shipped in a light-weight, dependency free repository: github.com/seqan/sharg-pa…. Many thanks to all contributors and supporters.

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SeqAn @SeqAnLib

3 years ago

🎉SeqAn 3.2.0 released🎉 We are happy and proud to announce a new release of the modern #CPP library for sequence analysis. Find out more about it at seqan.de/release/2022/0… or check it out right away github.com/seqan/seqan3/r…. Many thanks to all contributors and supporters.

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SeqAn @SeqAnLib

4 years ago

🧬📗 There is now a book on the creation of SeqAn3 📗🧬 Includes large sections on Modern C++, library design and research software engineering! #Bioinformatics #SeqAn #cplusplus #cpp

Hannеs Hauswedell | mastodon.social/@h2 @h2

4 years ago

🧬📗 There is now a book on the creation of SeqAn3 📗🧬 Includes large sections on Modern C++, library design and research software engineering! #Bioinformatics #SeqAn #cplusplus #cpp

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SeqAn @SeqAnLib

4 years ago

🎉 SeqAn 3.1.0 released 🎉 We are happy and proud to announce a new release of the modern #CPP library for sequence analysis. Find out more about it at seqan.de/release/2021/1… or check it out right away github.com/seqan/seqan3/r…. Many thanks to all contributors and supporters.

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@ericniebler.bsky.social @ericniebler

4 years ago

The goal of Generic Programming isn't to create a zero overhead abstraction. It typically aims for a **low** overhead abstraction, balancing raw perf with simplicity, clarity, and a modest set of semantically meaningful concepts.

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SeqAn @SeqAnLib

4 years ago

SeqAn core team member Enrico Seiler has just released v3.0.0 of the Succinct Data Structure Library (SDSL): github.com/xxsds/sdsl-lit… Get it while it's hot 🔥 #bioinformatics #sdsl #cplusplus

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Sara Hetzel @hetzel_s

4 years ago

Thanks to the team @SeqAnLib for providing such an efficient framework for the development of biological sequence analysis tools with #cplusplus. RLM is available via GitHub: github.com/sarahet/RLM

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SeqAn @SeqAnLib

4 years ago

We cordially invite you to our online CIBI User Meeting (13 - 21 Sep): ogy.de/ts51, scheduled for late afternoon. Just grab a drink and join after work, get the hottest news from @SeqAnLib @OpenMSTeam @IPB_Halle @knime & enjoy hands-on sessions @denbiOffice/#ELIXIR_DE

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BContrerasMoreira @BrunoContrerasM

4 years ago

Hoy en #GCB2021 participé en un curso para aprender a usar la biblioteca @SeqAnLib para análisis eficiente de secuencias biológicas. Puedes leer más en bioinfoperl.blogspot.com/2021/09/analis…

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Hannеs Hauswedell | mastodon.social/@h2 @h2

4 years ago

A PDF of my dissertation is now available online: “SeqAn3–Sequence Analysis and Modern C++” refubium.fu-berlin.de/handle/fub188/… #bioinformatics #cplusplus #seqan

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SeqAn @SeqAnLib

4 years ago

🎉SeqAn 3.0.3 released🎉 We are happy and proud to announce a new release of the modern #CPP library for sequence analysis. Find out more about it at seqan.de/release/2021/0… or check it out right away github.com/seqan/seqan3/r…. Many thanks to all contributors and supporters.

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SeqAn @SeqAnLib

5 years ago

Hi Mac users, SeqAn3 is now also available via macports: ports.macports.org/port/seqan3/su…. 🎉💻 Note that we renamed the SeqAn port to SeqAn2 to use SeqAn2 and SeqAn3 simultaneously.

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SeqAn @SeqAnLib

5 years ago

🎉SeqAn 3.0.2 is released🎉 We are happy and proud to announce the new release of the modern #CPP library for sequence analysis. Find out more about it seqan.de/seqan-3-0-2-re… or check it out right away github.com/seqan/seqan3/r…. Many thanks to all contributors and supportes.

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Zamin Iqbal @ZaminIqbal

5 years ago

This is v interesting from @KnutReinert and colleagues, faster than COBS and mantis for approximate search. Reminds me to re-read the DREAM-yara paper also (academic.oup.com/bioinformatics…). These guys on fire recently!

bioRxiv Bioinfo @biorxiv_bioinfo

5 years ago

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SeqAn @SeqAnLib

5 years ago

Check out the latest preprint (submitted to genome biology) of the SeqAn team biorxiv.org/content/10.110…

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SeqAn @SeqAnLib

5 years ago

Next Monday we present another #bioCpp course at the #GCB. It is online so you can join from everywhere. Registration open until tomorrow (gcb2020.de/Registration.h…) Join us if you want to learn more about modern #cpp in bioinformatics. More information here gcb2020.de/WS4.html

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SeqAn @SeqAnLib

5 years ago

Many thanks to all participants of our #ISMB2020 tutorial BioC++. It was a great digital experience and we had a lot of fun together learning modern #cpp ☺️! Next opportunity will be @GCB_Deutschland 2020 ;). Training by @denbiOffice and @ELIXIREurope

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de.NBI / ELIXIR-DE @denbiOffice

6 years ago

Unfortunately, @denbiOffice canceled all F2F #training courses until the end of April. Only the course "Introduction to #RegularExpressions" will take place online. For more information see: denbi.de/training/774-i…

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ELIXIR Europe @ELIXIREurope

6 years ago

#usegalaxy teams across the globe re-analysed #COVID19 data, using @galaxyproject platforms & open source software, all 100% reproducible! is.gd/Hgox0P A great example of the impact of public infrastructures & community-driven tools! @denbiOffice @ELIXIRnodeBE #SARSCoV