Typhi genomics papers @TyphiPapers

Preprint 🚨 - our phylogenetic + phylodynamic analyses suggest H58 𝘚. Typhi emerged in the late 1980s in India, likely from a chronic carrier, and was already MDR. tinyurl.com/originh58

🚨Pub on the genomics of typhoid in Samoa. A culmination of 4 years and an incredible trans-Pacific collab incl. @samoagovt @UMCVD @GenomeScience @TheDohertyInst, et al. Special thanks to @RaskoDavid and Mike Levine! @TyphiPapers @TyphiNET @PreventTyphoid journals.asm.org/doi/10.1128/mb…

We're very proud to publish our initial learnings and findings from this effort in @PLOSNTDs. This is a collaborative effort among @NCDCgov @GHRUamr and Nigeria's AMR sentinels journals.plos.org/plosntds/artic… .../6

If you want to understand the epidemiology of typhoid in an endemic area, it helps to undertake regular and in-depth analysis of strains - made relatively easy by genomic methods. Trouble is, that in many endemic areas, there are not a lot of strains.../2

Population structure and evolution of Salmonella enterica serotype Typhi in Zimbabwe before a typhoid conjugate vaccine immunization campaign biorxiv.org/content/10.110…

🚨New #typhoid #genomics paper finds multiple introductions of H58/4.3.1 S. Typhi into Kibera. @TyphiPapers @TyphiNET @PreventTyphoid #PLOSNTDs: Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement ... dx.plos.org/10.1371/journa…

#PLOSNTDs: Whole genome sequence analysis of Salmonella Typhi provides evidence of phylogenetic linkage betwe ... dx.plos.org/10.1371/journa…

The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study thelancet.com/journals/lanmi…

Genomic epidemiology of Salmonella Typhi in Central Division, Fiji, 2012 to 2016 thelancet.com/journals/lanwp…

Genomic analysis unveils the role of genome degradation events and gene flux in the emergence and persistence of S. Paratyphi A lineages biorxiv.org/content/10.110…

Impact of Salmonella genome rearrangement on gene expression biorxiv.org/content/10.110…

Antimicrobial Susceptibility and Genomic profiling of Salmonella enter... sciencedirect.com/science/articl…

Distinct Potentially Adaptive Accumulation of Truncation Mutations in Salmonella enterica serovar Typhi and Salmonella enterica serovar Paratyphi A | Microbiology Spectrum journals.asm.org/doi/10.1128/sp…

#PLOSNTDs: Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established popu ... dx.plos.org/10.1371/journa…

Extensively Drug-Resistant (XDR) Salmonella Typhi Outbreak by Waterborne Infection — Beijing Municipality, China, January–February 2022 weekly.chinacdc.cn/en/article/doi…

Persistence of rare Salmonella Typhi genotypes susceptible to first-line antibiotics in the remote islands of Samoa medrxiv.org/content/10.110…

The burden of typhoid fever in sub-Saharan Africa | RRTM @DovePress dovepress.com/the-burden-of-…

Genomic Investigation Reveals a Community Typhoid Outbreak Caused by Contaminated Drinking Water in China, 2022 frontiersin.org/article/10.338…