Zebin Wen @ZebinWen
PhD Candidate @TiroshLab @WeizmannScience Joined November 2021-
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Congrats to @MarioSuva lab, @TiroshLab, and @ArlottaLab, especially Vamsi and @RChanoch! A GBM cortical organoid model that not only recapitulates the core GBM cancer cell states, but also recapitulates intercellular communication between cancer cells and the TME via EVs! Having…
Congrats to @MarioSuva lab, @TiroshLab, and @ArlottaLab, especially Vamsi and @RChanoch! A GBM cortical organoid model that not only recapitulates the core GBM cancer cell states, but also recapitulates intercellular communication between cancer cells and the TME via EVs! Having…
There's a lot of excitement about foundation models and their ability to learn biology 🧬💻 But current tools for perturbation prediction perform worse than simple linear models! We need more careful benchmarking to make progress. biorxiv.org/content/10.110…
I’m very happy to share our paper in @CellCellPress on the spatial organization of GBM! bit.ly/4aKDeEp. Check out our tweetorial for a summary of our findings: bit.ly/44e0uZ9. I wanted to share a few additional thoughts on its implications and some future…
Build what you need and use what you build. This is a core philosophy of my research. It shifts the focus away from publishing “papers” to what really matters — impact. This thread unpacks why I think this is a successful approach to science. 1/10 Or see: perceiving-systems.blog/en/post/build-…
My main postdoc project over the past two years is now published in @CellCellPress. I'm very thankful to my friends and Co-first authors @alissacg @GaliliNoam for this fun journey together and @itaytirosh for his next level mentorship!
My main postdoc project over the past two years is now published in @CellCellPress. I'm very thankful to my friends and Co-first authors @alissacg @GaliliNoam for this fun journey together and @itaytirosh for his next level mentorship!
Excited to share our new paper in @CellCellPress on spatial organization in glioblastoma authors.elsevier.com/c/1izT9L7PXqQI9. We combine spatial transcriptomics (Visium) and proteomics (CODEX) to reveal five-layer organization of cellular states and a role of hypoxia as tissue organizer. 1/
We probably have about 50 plasmids we would like to prep ASAP. What is the most cost and time effective way to get as much of these plasmids prepped as possible?
Inspired by @lpachter and team's exploration of scRNA-seq pipelines, we face similar challenges in scATAC-seq, only magnified! After 5 years of tackling these inconsistencies with my advisor @JunhyongKim , Here is a summary (and some solutions😃) 1/n #Genomics #Bioinformatics
Inspired by @lpachter and team's exploration of scRNA-seq pipelines, we face similar challenges in scATAC-seq, only magnified! After 5 years of tackling these inconsistencies with my advisor @JunhyongKim , Here is a summary (and some solutions😃) 1/n #Genomics #Bioinformatics
As my lab develops Seurat, I wanted to share some thoughts on the important Seurat and scanpy package selection preprint from @Josephmrich/@lpachter 🧵
6 statistical methods that can be used for A/B Testing (and when to use them). A/B Testing is a staple of data science and data analyst interviews. And it's the Number 1 technique that companies benefit from in improving customer revenue. So here's a 6 of the most common stat…
Our latest out today in @Nature. We profiled 12 million single cells from mouse embryos spanning gastrulation to birth, defined cell type tree from zygote to birth, and unexpectedly found crazy fast changes within first hour of extrauterine life. OA PDF: rdcu.be/dyDAg
Our latest out today in @Nature. We profiled 12 million single cells from mouse embryos spanning gastrulation to birth, defined cell type tree from zygote to birth, and unexpectedly found crazy fast changes within first hour of extrauterine life. OA PDF: rdcu.be/dyDAg
We are overjoyed! Our SPICEMIX paper is being featured on the cover of @NatureGenet! Does it resemble a spatial transcriptome? It looks just like a spice mix! nature.com/ng/volumes/55/…
We are overjoyed! Our SPICEMIX paper is being featured on the cover of @NatureGenet! Does it resemble a spatial transcriptome? It looks just like a spice mix! nature.com/ng/volumes/55/… https://t.co/eJ0InNCYQn
Excited to share our paper in @NatureGenet: SPICEMIX, a joint model of spatial info and gene exp from spatial transcriptome data. Advances upon NMF w/ integration of graphical model, resulting in more meaningful latent reps of cells and spatial metagenes. nature.com/articles/s4158…
Real science: 1. Is not correlated with the amount of funding 2. Progresses slowly, usually taking many years 3. Leads to more questions than it answers 4. Advances when we disengage & in improvisational discussions 5. Is too important a thing to be done in a non-playful way
Recent changes to #scRNAseq quantification tools can leave one dizzy. In biorxiv.org/content/10.110… w/ @DelaneyKSull, @kreldjarn, @NikhilaSwarna, @GuillaumOleSan & @pmelsted we clarify what kallisto, Cell Ranger, salmon/alevin and STARsolo are doing and how they're performing. 1/🧵
Don't copy and paste answers from ChatGPT. Instead, use this AI tool to humanize your text. Here's the step-by-step guide 🧵:
Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out my lab's eighth annual Single Cell Genomics Day on March 29. Keynotes from @IdoAmitLab @JD_Buenrostro and Xiaowei Zhuang. Please RT/spread the word! satijalab.org/scgd
Immensely proud to share our four papers on #SingleCell dissection of #Alzheimers Disease coming out in @CellCellPress today, reporting 2.3M #scRNA profiles and 850k #scATAC profiles across 427 post-mortem human brain samples from AD and non-AD donors in a wonderful…
The best ideas don't come from big teams – it only Takes Two To Think! Get a Science Buddy, today's Nature Biotech explains why and how: nature.com/articles/s4158… @ItaiYanai @HHU_de
Tearing up the traditional biotech playbook go.nature.com/4aNnrVS
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Rony Chanoch-Myers �... @RChanoch
65 Followers 94 Following computational biologist | Postdoctoral fellow in the Bernstein lab @DFCI_CancerBio @broadinstitute | Ph.D. graduate @TiroshLab @WeizmannScience
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Tomàs Montserrat Ayu... @tmontsay
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Rouven Hoefflin @RouvenHoefflin
108 Followers 145 Following Group Leader at Medical Center Freiburg | Clinician Scientist | Lausbø | Previously @TiroshLab #ComputationalOncology #SpatialOmics #ImmuneEscape #Invasion
Jeroen Gilis @GilisJeroen
222 Followers 488 Following PhD student, developing statistical software for single-cell transcriptomics analysis, Ghent university
Artur Szałata @arturszalata
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slana.tech @slanatech
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Christopher Doyle @MrDataScience
64K Followers 53K Following Fmr Director of #Pricing & #Analytics for @Verizon, Interests in: #Mathematics #ML #DataScience #5G #Python #IoT #AR #VR #Arduino #DIY #Tech #ChatGPT
Lowe Lab @LoweLabMSKCC
6K Followers 192 Following Our lab focuses on genetic changes in cancer and how they contribute to tumorigenesis in the hope of finding therapeutic targets. Tweets from Scott signed -SWL.
Eldad Tzahor @Tzahore
3K Followers 645 Following regenerative medicine, heart diseases, from basic to translation science. Prof. at Weizmann Institute of Science
Memorial Sloan Ketter... @MSKCancerCenter
103K Followers 2K Following One of the world’s leading comprehensive cancer centers. To make an appointment: 877-871-9362
The Single-Cell Ninja... @Sc_Ninjas
6K Followers 4K Following Disseminating knowledge about single-cell technology. Like/RT ≠ endorse
Igor Ulitsky 💔 @IgorUlitsky
7K Followers 2K Following Associate Professor @WeizmannScience . lncRNAs, RNA biology, RNA therapeutics, gene regulation, all wet+dry. Father of 4. Not much time for anything else.
Israel ישראל @Israel
1.9M Followers 5K Following The official X account of the State of Israel (yes it’s really us) run by the @IsraelMFA team
The Jerusalem Post @Jerusalem_Post
845K Followers 896 Following Covering Israel like no one else. Newsletter: https://t.co/kjziIPfrzX
BNO News @BNONews
537K Followers 11 Following Breaking news and developing stories from the U.S. and around the world. For insights, follow @BNODesk. Hit the subscribe button to support our work.
Israel Defense Forces @IDF
3.2M Followers 32 Following Official IDF X account. We post real-time information and updates from the field.
Noah F. Greenwald @NoahGreenwald
948 Followers 428 Following Current postdoc @UCSF with @willowcoyote studying membrane proteins; PhD @stanford developing spatial tools to study breast cancer with @MikeAngeloLab @cncurtis
Michael Angelo @MikeAngeloLab
2K Followers 161 Following Pathology and computational biology through engineering and applied physics
Mingyao Li @DrMingyaoLi
2K Followers 427 Following Professor of Biostatistics & Digital Pathology at @Penn statistical genomics | single-cell & spatial omics | computational pathology | Views are my own.
Science Magazine @ScienceMagazine
4.5M Followers 460 Following Cutting-edge research, news, commentary, and visuals from the Science family of journals. Follow @NewsfromScience for stories from our News team.
Martin Lercher @MartinJLercher
2K Followers 243 Following Theoretical biophysicist and co-host of the Night Science Podcast with @ItaiYanai (https://t.co/XGWPyKa6jQ @nightsciencepod).
Nature Medicine @NatureMedicine
352K Followers 255 Following Nature Medicine is a research journal devoted to publishing the latest advances in translational and clinical research for scientists and physicians.
eLife - the journal @eLife
172K Followers 709 Following The funder-researcher collaboration and open-access journal for research in the life and biomedical sciences | @eLifeCommunity
ResearchHub @ResearchHub
43K Followers 1 Following A modern day preprint server powered by $RSC. Incentivizing the open publication of transparent research. Let's accelerate science!
Jan Broder Engler @JanBroderEngler
4K Followers 999 Following Scientist and software developer. Creator of https://t.co/jhDLNRoZqB.
Dr. Jean Fan @JEFworks
8K Followers 394 Following Associate prof @JHUBME. Doing #singlecell #spatialtranscriptomics #compbio #dataviz. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet.
Min Dai @artofbiology
1K Followers 941 Following Senior computational scientist in Fishell lab at the Broad Institute and HMS. Ph.D. and B.S. in Bioinformatics. Interests: #SingleCell #MachineLearning #Neuron
Şevin Turcan @sevin_turcan
731 Followers 324 Following Brain tumor biologist @uniklinik_hd and @NCT_HD.
Justin Lathia, PhD �... @JustinLathia
7K Followers 2K Following Lab studying cancer from a stem cell and cell-cell interaction perspective, #cancerstemcells, #glioblastoma, #GBM. Tweets are my own. @DrexelUniv @NIHOxCam alum
Cancer Discovery @CD_AACR
22K Followers 230 Following Follow Cancer Discovery for high-impact articles and news covering major advances in basic, translational, and clinical cancer research. Published by @AACR.
DeepSeek @deepseek_ai
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Smart Biology @SmartBiology3D
68K Followers 330 Following 3D animated, interactive, biology courseware so students can truly understand. #3D #biology #education #animation
Leeat Keren @leeat_keren
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Assaf Zaritsky @AssafZaritsky
2K Followers 582 Following Computational cell dynamics, bridging computer science and cell biology. Open science, outreach and education. PI @bengurionu since Oct. 2018.
Pete Bankhead @petebankhead
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Cai Lab @LongCai_Lab
5K Followers 82 Following The Cai Lab at Caltech. We developed sequential FISH (seqFISH), seqFISH+, MEMOIR, and RNA SPOTs, apply them to study various biological questions.
bioRxiv Cell Biology @biorxiv_cellbio
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Akshay 🚀 @akshay_pachaar
230K Followers 459 Following Simplifying LLMs, AI Agents, RAG, and Machine Learning for you! • Co-founder @dailydoseofds_• BITS Pilani • 3 Patents • ex-AI Engineer @ LightningAI
Alexander Pietras Lab @pietraslab
562 Followers 460 Following #Glioma plasticity and therapeutic resistance vs. #hypoxic & irradiated #microenvironment. AP tweets @lunduniversity Trained @MSKCancerCenter @fredhutch
ECCB2026 Geneva, Swit... @ECCBinfo
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Rony Chanoch-Myers �... @RChanoch
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Rajiv K. Khajuria @RajKhajur
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Yin Shen @YinShenLab
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