Ben Raphael @benjraphael
Professor of Computer Science, Princeton University compbio.cs.brown.edu Princeton, NJ Joined March 2014-
Tweets287
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A great thread from @uthsavc describing some of the math behind GASTON, our new method for modeling spatial variation in gene expression, now out in @naturemethods!
A great thread from @uthsavc describing some of the math behind GASTON, our new method for modeling spatial variation in gene expression, now out in @naturemethods!
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Congratulations to all the winners and finalists of the 2024 @Regeneron Science Talent Search! It was inspiring to meet the next generation of leaders in science and technology!
Congratulations to all the winners and finalists of the 2024 @Regeneron Science Talent Search! It was inspiring to meet the next generation of leaders in science and technology!
Thank you @rohitsingh8080 for hosting me at @DukeCellBiology! A great visit with a packed auditorium and many stimulating conversations! This photo was me being delightfully surprised that I was speaking in a lecture series next to these truly distinguished cell biologists
Thank you @rohitsingh8080 for hosting me at @DukeCellBiology! A great visit with a packed auditorium and many stimulating conversations! This photo was me being delightfully surprised that I was speaking in a lecture series next to these truly distinguished cell biologists
Ben Raphael retweeted
Also, a quick observation: our 1-D coordinate is a spatial *potential function* - like the height in the famous Waddington's landscape - for some tissues Modeling spatial information -> more accurate differentiation potential vs pseudotime methods which do not use spatial info
Ben Raphael retweeted
Consider this great opportunity to submit algorithmic or analysis cancer comp bio contributions to present to the phenomenal @RECOMBconf community and to be considered for PLOS CB! Deadline extended but happening soon!
Consider this great opportunity to submit algorithmic or analysis cancer comp bio contributions to present to the phenomenal @RECOMBconf community and to be considered for PLOS CB! Deadline extended but happening soon!
Ben Raphael retweeted
Five computer science graduate students have been named 2023 @SiebelScholars. The award recognizes academic achievement and leadership. Congratulations! 🎉 bit.ly/3xGJyeU
Ben Raphael retweeted
Princeton Bioengineering is hiring! (please ReTweet!). The search is open rank, but we're particularly interested in talented postdocs on the faculty job market. Applications due Nov15. Come join our vibrant and growing Bioengineering community! puwebp.princeton.edu/AcadHire/apply…
Anshul Kundaje (anshu... @anshulkundaje
27K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Lior Pachter @lpachter
47K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Jian Ma @jmuiuc
8K Followers 1K Following Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science @CMUCompBio @SCSatCMU @CarnegieMellon
Dan Landau @landau_lab
11K Followers 3K Following Somatic evolution, cancer genomics, epigenomics (Weill Cornell/New York Genome Center). Hemato-oncologist (NYP). Discl.: https://t.co/7TBNcbcVCP
𝕐 @nomad421
9K Followers 903 Following I ♥ science & compiled, statically-typed programming languages! I dislike slop in all forms, including slop thinking. Views are my own, but are obviously right.
Sohrab Shah @SohrabShah
4K Followers 242 Following Computational oncology, cancer genome scientist, single cell dynamics, Memorial Sloan Kettering Cancer Center. Views are my own.
Aaron Quinlan @aaronquinlan
17K Followers 1K Following All things genome mutation, software for genomic discovery. Chairperson of @UUGenetics Co-director, DELPHI Data Science Init (he/him) https://t.co/6GKjALLFfk
Michael Hoffman @mich... @michaelhoffman
23K Followers 6K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre, @UHN. Assoc Prof, Medical Biophysics, University of Toronto. COI https://t.co/CvupKNIjZr
Michael Schatz @mike_schatz
16K Followers 1K Following Bloomberg Distinguished Professor of Computer Science and Biology at Johns Hopkins University
Barış Ekim @ekimbarisc
1K Followers 1K Following 🇹🇷. PhD student in algorithmic bioinformatics @lab_berger @MIT_CSAIL. Visiting @broadinstitute. Union rep @MITGradUnion. Tweets in TR/EN, views my own.
Iman Hajirasouliha @hajirasouliha
2K Followers 2K Following Associate Professor at @WeillCornell Alum @SFU @BrownUniversity @Stanford (CS) @UCBerkeley AI in Medicine, Computational genomics, Pathology, IVF
PM @pashadag@genomic.... @pashadag
1K Followers 281 Following Algorithmic Bioinformatics Researcher and Teacher. Tweets about research results and educational/mentorship topics (for details, see https://t.co/FUl9nGstuH).
Kristoffer Sahlin @krsahlin
1K Followers 588 Following Assistant Professor at the Department of Mathematics, Stockholm University, and a @Scilifelab Fellow. Algorithms, Modeling, Transcriptomics, Genomics.
Can Alkan @calkan_cs
2K Followers 639 Following Paper writer @BilkentCompGen, python basher @CS_Bilkent. Offensive troll. Not a data scientist nor bioinformatician. No soul, no empathy, no sympathy. Nothing.
Adam Phillippy @aphillippy
16K Followers 918 Following Finished a human genome, working on a few more 👨💻 Posts are my own
Eytan Ruppin, MD, PhD @EytanRuppin
5K Followers 1K Following Computational precision oncology researcher | Chess & bridge enthusiast ♟️🃏 Ethnic music lover 🎵 Seinfeld fanatic 📺 Sci-fi aficionado 🛸 | All views my own
Rong Fan @RongFan8
11K Followers 1K Following Harold Hodgkinson Professor of Biomedical Engineering and Pathology, Yale University. *Personal Account*. Views are my own.
Giulio Caravagna @gcaravagna
1K Followers 739 Following Associate Professor & Cancer Data Scientist. I run the Cancer Data Science Laboratory at @UniTrieste, Italy. Opinions are my own.
Nature Methods @naturemethods
151K Followers 1K Following Nature Methods publishes cutting-edge methods, tools, analyses, resources, reviews, news and commentary, supporting life sciences research. Tweets by editors.
Karsten Borgwardt @kmborgwardt
4K Followers 718 Following Director @MPI_Biochem, #MachineLearning and #SystemsBiology, honorary professor @LMU_Muenchen
Okieekron @Okieekron41428
58 Followers 3K Following
Johnbull Vitowanu @JohnVito21
343 Followers 422 Following Think and think again. Speak louder and let your voice be heard!
Julia di Iulio @juliadiiulio
300 Followers 285 Following Genomics, transcriptomics, CoV2 surveillance. Director Bioinformatics, Vir Biotechnology. PharmD PhD MBA
Veyra Whitmore @emmacastro4568
4 Followers 580 Following
Solene Vance @SoleneVance
781 Followers 304 Following Purpose. Process. Product. Wellness and Living out of a suitcase (by choice). Horophile
MollyTed @Qg70OHLrQr5T687
50 Followers 5K Following
Zeyuan (Johnson) Chen @Johnsonzchen
26 Followers 126 Following PhD candidate in Computer Science @ UCLA | Computational Medicine | Computational (Epi)Genomics
Muhammad Arham @Muhamma58088514
5 Followers 280 Following Prospective PhD student | 2x Winner of CS50x Puzzle Day | AI & ML Enthusiast | Hackathon finalist @ https://t.co/p5jIK9CLKk| Trainer @ iCodeGuru | LeetCode
Rija Zaidi @Rija_Zaidi_
74 Followers 69 Following PhD Student @uclcancer funded by @The_MRC | Computational Cancer Genomics Lab
Cassandra Burdziak @CassBurdziak
677 Followers 414 Following Computational Biology Postdoc at the Dana Pe’er lab at @MSKCancerCenter. Views are my own.
Shreyas Garimella @1garimella
5 Followers 127 Following
Linh N Tran @lntran26
213 Followers 671 Following Postdoc @uwgenome. Genetics PhD @uarizona. Population genetic inference, cancer evolution, and machine learning.
Prof. Truong-Son Hy @sonpascal93
548 Followers 6K Following Tenure-Track Assistant Professor at University of Alabama at Birmingham. Previous: Indiana State University, UC San Diego. PhD from University of Chicago.
Aastha Pal @apal9_pal
344 Followers 902 Following PhD @penn • prev @Stanfordmed @BMSnews • @BU_tweets alum 🧬💻💊
Isabella Xie @IsabellaXie636
0 Followers 19 Following
Dee Velazquez @dee_velazquez_
14 Followers 61 Following Research assistant and software developer at JEFWorks Lab, @JHUBME. Working in #machinelearning, #computervision, and #bioinformatics. Alum @johnshopkins.
Xavi Loinaz @XLoinaz17004
4 Followers 58 Following PhD student @PrincetonCS, previously @getz_lab @BroadInstitute
Leawnag @Leawnag9128712
41 Followers 1K Following
Jake Chang @jake_changyan
1 Followers 177 Following PhD candidate @StanfordDBDS | formerly @NotreDame
Ajita Shree @AjitaShree
33 Followers 172 Following PhD Student IIT Kanpur. Formerly GE Aviation, GE Global Research and IIT Delhi.
Da Kuang @DaKuangDerek
35 Followers 428 Following CS Ph.D. candidate @CIS_Penn; cell lineage reconstruction; metric learning; spatial proteomics
Mo Sun @mosun72175420
115 Followers 693 Following @GeorgiaTech Bioinformatic PhD student insterested in RNase H, DNA replication and repair, DNA modification, Epigenetics
Macrina Lobo @MacrinaLobo
18 Followers 365 Following Curious about everything. Current interests include multiomics, gene regulation, cell signaling, machine learning and algorithms. Working on a PhD.
Yongjie Lin @linyongjie9
15 Followers 100 Following lineage tracing and plasticity Ph.D. Integrated Life Science, Yihan Lin lab @PKU1898 B.S. Integrated Science Program @PKU1898 Looking for postdoc position
Xufeng Chen @xfchen0912
10 Followers 393 Following
Xiuwei Zhang @XiuweiZhang
1K Followers 276 Following Associate Professor @gtcse @GeorgiaTech | single cell omics, machine learning. PhD @ICepfl alumnus @teichlab @YosefLab
Peter Halmos @HalmostThere
5 Followers 58 Following
Shunhua Han @hanshunhua
177 Followers 689 Following Bioinformatics Scientist @illumina working on finding challenging variants.
Tavor Baharav @TBaharav
180 Followers 176 Following Postdoctoral Fellow at the Eric and Wendy Schmidt Center at the Broad Institute, working in computational genomics. Previously, EE PhD at Stanford.
Tariq @drtariqarshad1
78 Followers 4K Following
YimingLi @LynnYiming
16 Followers 183 Following PhD candidate | Intern @TencentGlobal AI4Science Lab
Deogratious Afimani �... @deoafema
492 Followers 2K Following #agribusiness #fintech #data value chain finance
Chenxin Jiang @chenxin_jiang5
1 Followers 10 Following
jazz1234 @jazz1234934614
0 Followers 477 Following
Hallou Lab @Hallou_Lab
927 Followers 1K Following Group of Dr Adrien Hallou @KirOxford @UniofOxford | Biophysics & spatial biology of cell fate decisions & tissue dynamics | Alumnus @Cambridge_Uni @ENS_ULM
DailyHealthcareAI @aipulserx
1K Followers 2K Following Sharing research papers and news on AI applications in radiology, pathology, genetics, protein design and many more. Let's learn together!
Ronald Charles Taylor @RonaldC30560211
52 Followers 827 Following
Marygrace Trousdell @MarygraceTrous2
132 Followers 461 Following Comp Bio PhD student @BrownUniversity Mani Lab | Former Bioinformatician at @CSHL with @caoresco | B.S. Math & B.A. Biology @universityofri ‘19
Asal Abolhasani @AsalAbolhasanii
3 Followers 116 Following
Anshul Kundaje (anshu... @anshulkundaje
27K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Lior Pachter @lpachter
47K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Jian Ma @jmuiuc
8K Followers 1K Following Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science @CMUCompBio @SCSatCMU @CarnegieMellon
Dan Landau @landau_lab
11K Followers 3K Following Somatic evolution, cancer genomics, epigenomics (Weill Cornell/New York Genome Center). Hemato-oncologist (NYP). Discl.: https://t.co/7TBNcbcVCP
𝕐 @nomad421
9K Followers 903 Following I ♥ science & compiled, statically-typed programming languages! I dislike slop in all forms, including slop thinking. Views are my own, but are obviously right.
Sohrab Shah @SohrabShah
4K Followers 242 Following Computational oncology, cancer genome scientist, single cell dynamics, Memorial Sloan Kettering Cancer Center. Views are my own.
Aaron Quinlan @aaronquinlan
17K Followers 1K Following All things genome mutation, software for genomic discovery. Chairperson of @UUGenetics Co-director, DELPHI Data Science Init (he/him) https://t.co/6GKjALLFfk
Michael Schatz @mike_schatz
16K Followers 1K Following Bloomberg Distinguished Professor of Computer Science and Biology at Johns Hopkins University
Manolis Kellis @manoliskellis
29K Followers 4K Following Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Iman Hajirasouliha @hajirasouliha
2K Followers 2K Following Associate Professor at @WeillCornell Alum @SFU @BrownUniversity @Stanford (CS) @UCBerkeley AI in Medicine, Computational genomics, Pathology, IVF
PM @pashadag@genomic.... @pashadag
1K Followers 281 Following Algorithmic Bioinformatics Researcher and Teacher. Tweets about research results and educational/mentorship topics (for details, see https://t.co/FUl9nGstuH).
Can Alkan @calkan_cs
2K Followers 639 Following Paper writer @BilkentCompGen, python basher @CS_Bilkent. Offensive troll. Not a data scientist nor bioinformatician. No soul, no empathy, no sympathy. Nothing.
Eytan Ruppin, MD, PhD @EytanRuppin
5K Followers 1K Following Computational precision oncology researcher | Chess & bridge enthusiast ♟️🃏 Ethnic music lover 🎵 Seinfeld fanatic 📺 Sci-fi aficionado 🛸 | All views my own
Rong Fan @RongFan8
11K Followers 1K Following Harold Hodgkinson Professor of Biomedical Engineering and Pathology, Yale University. *Personal Account*. Views are my own.
Charles Swanton @CharlesSwanton
16K Followers 811 Following Cancer Evolution and Genome Instability, Lung Oncologist Air Pollution and Drug Resistance Fair Weather 🚴
Nicholas McGranahan @NickyMcGranahan
4K Followers 561 Following Group leader at the CRUK-UCL Lung Cancer Centre of Excellence. Cancer genomics, bioinformatics, and somatic evolution.
Sandy Anderson @ara_anderson
5K Followers 671 Following Mathematical oncologist working on cancer evolutionary therapy #AndersonLab @mathonco Chair @EvolTherapy Director @SMB_MathBiology Fellow and former President
Rayan Chikhi @RayanChikhi
3K Followers 488 Following Researcher in bioinformatics @institutpasteur and @CNRS. Tweets about methods for DNA sequencing data analysis, and genome assembly.
Nuria Lopez-Bigas @nlbigas
7K Followers 2K Following I DON'T USE TWITTER Follow me at: https://t.co/MqqQHVTPix ICREA at @irbbarcelona. Computational cancer genomics. Leading the @bbglab
Krishnaswamy Lab @KrishnaswamyLab
7K Followers 1K Following We develop data geometric, topological, dynamic, deep learning methods for analysis, visualization and representation of big data, especially biomedical data.
brent pedersen @brent_p
5K Followers 1K Following computational biologist. Building humane tools for large-scale genomics and rare-disease. Contact me if you have genomics/bioinformatics contracting work.
Achyuta Rajaram @AchyutaBot
2K Followers 1K Following @_ddjohnson fan acc, Physics @MIT, Interp @OpenAI views are mine and do not necessarily reflect those of my employer
Dr. Nyasha Chambwe @doc_nyasha
832 Followers 1K Following Asst Prof of Molecular Medicine @NorthwellHealth | Alum: @StJudeResearch @isbsci @WeillCornell @JacksonStateU | 🇿🇼born🇺🇸based #blackandSTEM #blackincompbio
Society for Science @Society4Science
49K Followers 1K Following Publisher of @ScienceNews & @SN_Explores. Hosts STEM competitions: #RegeneronISEF, #RegeneronSTS, #JuniorInnovators
Samit Dasgupta @samit_dasgupta
1K Followers 1K Following JB Duke Distinguished Professor of Mathematics @ Duke University. Board member of International FOXP1 Foundation. Number theory, rare disease, chess, DC sports.
Dr. Derrick J. Morton @DMortonPhD
2K Followers 1K Following Assistant Professor @USC | Visiting Assoc. @Caltech | RNA Biologist | #Drosophila | #hiPSC-derived neurons - organoids #Neuro | Second-gen HBCU grad @CAU 🏳️🌈
Duke Department of Ce... @DukeCellBiology
887 Followers 230 Following Driving research and innovation through collaborative investigations between graduate students, post docs, and faculty.
Rohit Singh @rohitsingh8080
2K Followers 626 Following Computational biologist. Faculty @DukeU. Co-founder https://t.co/NPPgsZa9sa. Prev @MIT_CSAIL. Did quant investing for a while, before returning to research.
JuliaPackages @JuliaPackages
1K Followers 79 Following A feed of newly created and updated #JuliaLang packages. Powered by the @JuliaLanguage.
RECOMB-CCB 2023 @recombccb2023
78 Followers 34 Following RECOMB-CCB, April 14-15 2023. The @RECOMBconf 15th Satellite Workshop on Computational Cancer Biology 2023. Chairs: @gcaravagna and @GBSchw
Peter W. Laird (@pete... @peterwlaird
577 Followers 271 Following DNA methylation & cancer epigenetics. Tweets are my own. I tend to stick to science.
The Mark Foundation f... @TheMarkFdn
4K Followers 770 Following Partnering with scientists to accelerate transformation in cancer research
CindyWei @TzuTingCindy
172 Followers 955 Following Bioinformatician, previous biologist, singer, theatre light designer, now into deeptech VC and precision medicine
Spatial Omics @SpatialOmics
1K Followers 193 Following Tweets about spatial biology including genomics, transcriptomics, proteomics, or other -omics in general. Some tweets about single-cell DNA or RNA sequencing.
Samuel Aparicio @sajraparicio
1K Followers 312 Following physician scientist working in genomics, cancer therapeutics, single cell evolution, sailing and skiing addict. Opinions are my own.
Maya Lewinsohn @MayaLewinsohn
248 Followers 206 Following @UW_MSTP and @UWMedicine student. PhD with @trvrb at the @fredhutch. Spatial tumor heterogeneity and cancer evolution.
Jens Lagergren @jens_lagergren
112 Followers 34 Following
Haiyuan Yu @haiyuanyu
304 Followers 63 Following Tisch University Professor, @WeillInstitute, @Cornell, network systems biology, deep learning, structural proteomics, gene regulation, human disease
Maurizio Scaltriti @ScaltritiLab
41K Followers 388 Following VP Translational Medicine, Early Oncology, AstraZeneca. Previous Associate Director of Translational Science at MSKCC. Co-founder of https://t.co/sf253X5XeB.
Marcin Imieliński @skimomiks
2K Followers 337 Following Director of Cancer Genomics, Perlmutter Cancer Center; Associate Professor, NYU Grossman; Attending Pathologist, NYU Langone; Core Member, NYGC, tweets my own
Mohammed AlQuraishi @MoAlQuraishi
11K Followers 350 Following MLing biomolecules en route to structural systems biology. Asst Prof of Systems Biology and CS @Columbia. Prev. @Harvard SysBio; @Stanford Genetics, Stats.
RECOMB Conference Ser... @RECOMBconf
2K Followers 241 Following The 30th International Conference on Research in Computational Molecular Biology. May 26 - 29, 2026
Jerelle A Joseph @jerelleaj
3K Followers 834 Following Assistant Professor @EPrinceton | biomolecular condensates + computer simulations | (she/her)
Ellen Zhong @ZhongingAlong
8K Followers 883 Following Assistant Professor @PrincetonCS. #ai4science #proteins247 #cryoem #cryodrgn ❄️🐉 Prev: @MIT @DeepMind @DEShawResearch. Currently moonlighting @generate_biomed.
Princeton Engineering @EPrinceton
10K Followers 2K Following Princeton University School of Engineering and Applied Science. Engineering in the service of humanity.
The Julia Language @JuliaLanguage
30K Followers 322 Following Julia is a high-level, dynamic programming language built for technical computing. Join the conversation at #JuliaLang @JuliaConOrg @JuliaInclusive
Damon Runyon Cancer R... @DamonRunyon
5K Followers 3K Following This account is no longer actively updated or monitored. Please visit our website or follow our other social media accounts for news and research updates.
Cong Ma @Cong992
126 Followers 136 Following Postdoc in Computational Biology at Princeton University
Benjamin D. Greenbaum @bengrbm
1K Followers 378 Following Member @CompOncMSK @MSKCancerCenter Co-Director, Olayan Center for Cancer Vaccines Comp Immuno-oncology Self/nonself theory Founder @rome_tx Physicist
Juli Klemm @jklemm
683 Followers 278 Following Program Director in the NCI Center for Strategic Scientific Initiatives. Views are my own.
Peter Van Loo @VanLooLab
2K Followers 184 Following Professor in cancer genomics and tumor evolution at MD Anderson Cancer Center Visiting Group Leader at the Francis Crick Institute
Ewa Szczurek @ewa_szczurek
757 Followers 293 Following
Fei Chen Lab @insitubiology
3K Followers 102 Following Fei Chen's lab at @BroadInstitute and @HSCRB | Spatial and temporal genomics | Tweets by lab members
RECOMB-CCB 2022 @2022Ccb
74 Followers 120 Following RECOMB-CCB 2022 The RECOMB Satellite Workshop on Computational Cancer Biology 2022
Mona Singh @ProfMonaSingh
442 Followers 173 Following Professor of Computer Science and LSI Genomics @princeton. Computational biologist. Networks, interactions, mutations, structure.
Schmidt Futures @SchmidtFutures
13K Followers 92 Following Supporting projects at the intersection of talent and technology.
RECOMB 2022 @recomb2022
266 Followers 294 Following The 26th International Conference on Research in Computational Molecular Biology (RECOMB) 2022
Johannes Reiter @jgreiter
914 Followers 770 Following Using computation to improve detection and treatment of cancer | ☕️ | 🏃 | 👨🏻💻 |👨🏻🚒 | ⚽️ | 🏐 | 🎺 | 🇦🇹 | 🇪🇺
Swanton Lab @SwantonLab
4K Followers 130 Following The Cancer Evolution and Genome Instability Lab is led by @CharlesSwanton and is based @TheCrick and @uclcancer.
PrincetonSPE @PrincetonCEFR
774 Followers 655 Following Strategic Partnerships and Engagement, Princeton University's innovation partnership team for industry, government, non-profits & more.
brangwynnelab @brangwynnelab
5K Followers 266 Following
Mohammed El-Kebir @melkebir
105 Followers 81 Following Associate Professor of Computer Science, University of Illinois at Urbana-Champaign
Luca Pinello @lucapinello
4K Followers 3K Following Computational methods for epigenetic, CRISPR genome editing and single-cell genomics. Associate Professor at MGH / Harvard Medical School. https://t.co/GouTKpGNR2
Matt Myers @mattmyers_cb
99 Followers 207 Following Computational biologist working on cancer genomics in @SohrabShah lab @CompOncMSK. PhD in computer science from @princeton. Vegan. @[email protected]
Kerstin Haase @HaaseKerstin
247 Followers 324 Following Research fellow at @uclcancer. Interested in cancer genomics, intra-tumour heterogeneity and evolution. Previously @TheCrick and @ChariteBerlin.Trends for United States
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