Ornob Alam @genomeinquirer
Population genetics, rice domestication, herbarium specimens. PhD candidate in @LabPurugganan, @NYUBiology. Science writer @icddr_b. New York City Joined September 2018-
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simulation has been a critical tool for population genetics for some time so it's great to see two recent preprints dealing with some of its thornier issues when using forward in time models
We introduce an ARG-inspired data structure Genotype Representation Graph (GRG) to enable lossless data compression, efficient computation through graph traversal. Developed a fast inference method. Cost ~80 GBP to convert 350TB VCF (200,000 UKBiobank WGS) into 160 GB GRG.
We introduce an ARG-inspired data structure Genotype Representation Graph (GRG) to enable lossless data compression, efficient computation through graph traversal. Developed a fast inference method. Cost ~80 GBP to convert 350TB VCF (200,000 UKBiobank WGS) into 160 GB GRG.
New paper from the lab! Epigenetic silencing of transposons is widely considered a good resolution of host-TE conflicts, but is it? Especially, we showed that this silencing could lead to harmful local enrichment of repressive marks, even in genes (Huang et al. 2022 eLife). (1/5)
New paper from the lab! Epigenetic silencing of transposons is widely considered a good resolution of host-TE conflicts, but is it? Especially, we showed that this silencing could lead to harmful local enrichment of repressive marks, even in genes (Huang et al. 2022 eLife). (1/5)
Why do transposons jump at highly variable rates, and what does that mean to host evolution? In this @AnnualReviews, @texasrulz1, @kweiosis, Yuheng, and I integrated classic pop gen theories and new empirical data to explore this long-standing question. annualreviews.org/content/journa…
New Perspective: "Are cereal grasses a single genetic system?" rdcu.be/dErWS 30 years of genetic and genomic research in cereal crops. Genome sequences have revealed common evolutionary patterns and differences between species and will support applications in breeding.
At last, my work with @pastramimachine on a quantitative genetics model of background selection in humans is live at PLoS Genetics! journals.plos.org/plosgenetics/a…
How does selection from environmental gradients influence the eco-evo dynamics of range expansions? With @rangelimits, we use the experimental evolution of duckweeds to test some theoretical predictions on expansion speed. Out now in @Ecology_Letters! onlinelibrary.wiley.com/doi/full/10.11…
I am so excited to share the advance online version of our new paper "Do genetic loci that cause reproductive isolation in the lab inhibit gene flow in nature?" academic.oup.com/evolut/advance…
We are delighted to share our work on a robust, accurate method for sampling genome-wide genealogies (aka ARGs) from the full posterior distribution. This is a product of years of hard work by @YunDeng5, who is jointly advised by @ras_nielsen and me. doi.org/10.1101/2024.0… 1/n
Estimating evolutionary and demographic parameters via ARG-derived IBD biorxiv.org/content/10.110…
Haha et al. 2023: "Urbanisation generates multiple trait syndromes for terrestrial animal taxa worldwide" via @NatureComms nature.com/articles/s4146…
Apparently, while studying for the midterm, my students memed my class. 💀 credit: @wrboohar
#PeerReview from @eLife of 👉🏿 Next-generation inference of past population history by integrating diverse types of genomic markers biorxiv.org/content/10.110… #biorxiv_evobio #reviewedpreprint
Ok look, there just isn't any good evidence of transgenerational epigenetic inheritance being caused by trauma in humans. I'll wager $200 — show me good causal evidence (we can pre-negotiate terms) and I'll pay you if you prove me wrong. So why is this making it into Science?
Thread about a new preprint from the lab, led by Logan Whitehouse and Dylan Ray, about tree-sequences. The teaser tagline: why use tree sequences for evolutionary inference when you can directly examine population genetic alignments? biorxiv.org/content/10.110…
How do scaling laws at the single-cell level give rise to macroecological patterns? We show that in plankton, power laws of nutrient uptake and grazing shape eco-evolutionary dynamics to produce scaling relationships at the ecosystem level. 🌊 science.org/doi/10.1126/sc…
Scaling the fitness effects of mutations with respect to differentially adapted Arabidopsis thaliana accessions under natural conditions biorxiv.org/content/10.110…
Very happy to announce the release of my newest manuscript with Katie Lotterhos @Northeastern ! (1 / n)
Only ten years in the making!! Just preprinted a global analysis of climate change impacts on 100+ zoonotic and vector-borne diseases: tinyurl.com/ypsbcfja with the wonderful @ProfKateJones @roryjgibb
Registration is now open for the 2024 New York area Population Genetics meeting, organized by @bendesky. Keynote talks by @lindymcbr and @CedricFeschotte. At Columbia U, May 17, 2024. Register (free) and submit abstracts for talks or posters here: zuckermaninstitute.columbia.edu/new-york-area-…
Harmit S. Malik @HarmitMalik
44K Followers 8K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/him
Dmitri Petrov 💔 @PetrovADmitri
15K Followers 4K Following Evolutionary Biologist at Stanford. Rapid Evolution, Adaptation, and Genomics. Open Science advocate.
Sophien Kamoun @KamounLab
38K Followers 29K Following Biologist at The Sainsbury Lab; passionate about plant pathogens and evolution; open science advocate; loves travel, food and sports; nomad and hunter-gatherer.
Sevinç Ercan @ErcanLab
1K Followers 1K Following Associate Professor of Biology at NYU. Chromatin structure, SMCs, condensin, gene regulation, X chromosomes.
Prof Richard Buggs @RJABuggs
4K Followers 3K Following Senior Research Leader (Plant Health and Adaptation) @KewGardens & Professor of Evolutionary Genomics @QMUL
plantevolution.bsky.s.. @PlantEvolution
23K Followers 706 Following Weigel Lab aka WeigelWorld Retweet≠endorsement @MPI_Bio #OpenScience COIs https://t.co/9ZniwHb9c1 GoogleScholar https://t.co/shbRsjfyPR
Matt Rockman @wormsrock
2K Followers 1K Following Evolutionary zoologist & quantitative geneticist @wormsrock.bsky.social
Andrew Kern @pastramimachine
15K Followers 4K Following Evolution, population genetics, machine learning. rhythm section. he/him
Nature Genetics @NatureGenet
128K Followers 2K Following Nature Genetics is a monthly journal publishing high impact research in genetics and genomics. RT/like=interesting/relevant, not necessarily endorsement.
Bettina Joy de Guzman @ancientlyric
7K Followers 5K Following https://t.co/niPWGYnKDd… composes Ancient Music. Cosmote TV History host. MA Classics. BA English, Music, Psych, & Classics. CCA-South President
tariful i khan @tarif71
77 Followers 193 Following Experienced #communications and #DisasterManagement professional based in #Bangladesh. My opinions are my own.
ExplainTXT - AI Readi.. @explaintxt
16 Followers 442 Following Supercharge Your Reading! 📖 Select any text you don't understand, and get instant explanations. Special offer for students 🎁
Zhang Handuo @christlurker
31 Followers 202 Following AI Engineer loving machine learning and robot navigation
Asad Hasan @asadrhasan
83 Followers 148 Following PhD candidate at the Whitlock Lab @ZoologyUBC | @uoftalumni
Bárbara Bitarello, P.. @dudutchy
615 Followers 1K Following Evolution|PopGen, Intersectional feminism, socialism. Neurodivergent. She/her. Prof. at @BrynMawrCollege. Views don’t represent those of my employer 🏳️🌈🇧🇷
John Lovell @_johntlovell
948 Followers 633 Following Evolutionary biologist and outdoor enthusiast | comparative & quantitative genomics (mostly plants) | HudsonAlpha Genome Sequencing Center & Joint Genome Inst.
13_Grace @13Grace243317
22 Followers 1K Following
McReray @McReray91913
45 Followers 1K Following
Yasuhiro Kadota @Yasu0407
426 Followers 444 Following Senior Research Scientist @ RIKEN CSRS Plant Immunity Research Group. I study how plants recognize pathogens and rapidly induce immune responses.
Lauren Tapper @tapp_lau
38 Followers 5K Following
Alena Jaurigui @AlenJaurigu
51 Followers 5K Following
Johan A. Stenberg @Stenberg_JA
2K Followers 2K Following Natural scientist™ | Biology Professor @_SLU | Director of @CBC_SLU | Davidshall
Helal Mostofa @Helal_Genomics
137 Followers 941 Following Postdoctoral Fellow (Crop Genomics), Laboratory of cell engineering and molecular breeding of Wheat, Shanxi Agricultural University.
Frontiers in Science @FrontScience
4K Followers 3K Following Transformational science for healthy lives on a healthy planet. #openaccess @FrontiersIn
sevgi mutlu @sevgimutlu80
5K Followers 5K Following Doctoral candidate @CarsonCenter interested in the multispecies studies, interspecies dependencies, fermentation practices, informal food transfers.
Microbiology @X_Microbiology
2K Followers 4K Following #Bacteria #Virus #Parasite #Fungi #Microbiological_News_Story #Research #Comment #Communcation
Yann Bourgeois @bourgeois_yann
864 Followers 1K Following Evolutionary biologist/Molecular ecologist/Population geneticist
Mansoor Ali @Mansoor76151245
121 Followers 907 Following Student # Plant biologist#Lover of nature# interested in Plant Development
Pablo Mendieta @Pabster212
664 Followers 1K Following - Plant Guy 🌱 - Genomics/Genetics - Python/R programmer - Graduate Student @UGA - https://t.co/wFVHQn2j1K -
Keith Adams @KeithLAdams
868 Followers 635 Following Professor, U of BC. Genome evolution, polyploidy, duplicate gene evolution, gene regulation, alternative splicing, non-coding RNAs, Brassica, duckweed
Natanael Spisak @N_t_n__l
247 Followers 775 Following Postdoc studying mutations @Columbia Previously @ENS_ULM
Tetough @tetough96971
0 Followers 72 Following A woman who is passionate about life, shows compassion, pursues learning, keeps a sense of adventure, refuses to give up, and believes she is worthy
Markus Stetter @MGStetter
1K Followers 699 Following Group leader at Uni Cologne. Studying genomic patterns of domestication and polygenic adaptation in maize and amaranth.
Alida van Dijk @AlidavanDijk4
4K Followers 3K Following Plant path, mycology, and CRISPR nerd 🌱🧬| PhD candidate at @Fabiteam1 🔬 | Lover of all things fungi 🍄 | She/her 🏳️🌈 Opinions are my own.
Irina Ćalić Fiebig @calic_irina
496 Followers 480 Following Computational Scientist @Inari_Ag 👩💻 🌻 🌾 | Plant Genetics & Systems Biology | @Mariecurie_alum | @GitHub as icalic
Plant Humanities UK @PlantHums_UK
3K Followers 2K Following Celebrating the infinite possibilities of arts-humanities-plants encounters. @kewgardens & @RoyalHolloway research project funded by @ahrcpress
Guy R + Scifind.io @grohkin
1K Followers 5K Following Co-Founder of https://t.co/Y3t9XLCu8k (@sci_find). Molecular Biologist from @IndBio/@Girihlet. Building community to troubleshoot scientific problems #OpenScience 🏳️🌈 🧬
Biotechnology Confere.. @Biotech_conf
450 Followers 4K Following It is a pleasure to invite you to the 13th International Conference on Biotechnology on June 27-28, 2024 in London, UK
ROTO-RUB @RotoRub
3K Followers 3K Following ROTO Research Group• The Return of the Organism in the Biosciences: Theoretical, Historical, & Social Dimensions 🇩🇪🇲🇽🇦🇷🇫🇮🇺🇸 #PhilSci #PhilBio #HistSTM
The Interested Layper.. @LeniDiamond
6K Followers 2K Following IR/geopol ideology/fascism/populism anthropocene/energy legitimacy oceans Asia 中国 한국 anthro intl law consumption econ/history public opinion Arctic paleo/geo
Manav Bishnoi (Safety.. @ERMANAVBISHNOI
61 Followers 52 Following Scientific Officer (Safety) @ IISER Bhopal
Kathryn Mercier @kpmercier
1K Followers 2K Following tweeting abt plants, ecology, politics, books, sometimes nonsense | PhD candidate #CarnavalLab & urban forester | views my own | she/they
Sebastián Hernández.. @Sebhgtz
311 Followers 1K Following @SaveFruit_ founder 🥑 we make food last longer with natural and residue-free tech to waste less, sell more and at a better price 🥑
Sunil K. Kenchanmane .. @Sunil_KumarKR
2K Followers 1K Following Postdoc, Birnbaum lab, NYU | Incoming Assistant Professor BPSC UC Riverside | Comparative single-cell omics| First-gen| Cornhusker | Co-founder @plantpostdocs
Rice research : Open .. @research_rice
951 Followers 5K Following Enthusiastic publisher on research of increasing rice production and value for the poor and to help rice farmers in adapting to climate change.
Vince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data Skills
Harmit S. Malik @HarmitMalik
44K Followers 8K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/him
Dmitri Petrov 💔 @PetrovADmitri
15K Followers 4K Following Evolutionary Biologist at Stanford. Rapid Evolution, Adaptation, and Genomics. Open Science advocate.
Sophien Kamoun @KamounLab
38K Followers 29K Following Biologist at The Sainsbury Lab; passionate about plant pathogens and evolution; open science advocate; loves travel, food and sports; nomad and hunter-gatherer.
Jeffrey Ross-Ibarra @jrossibarra
12K Followers 3K Following evolutionary genomics of maize. erstwhile ethnobotanist. purveyor of bad puns. dad. not a cool cow from 1994 (he/him) @[email protected]
Michael Eisen @mbeisen
77K Followers 15K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/bZ7I9oSJe0.
Sevinç Ercan @ErcanLab
1K Followers 1K Following Associate Professor of Biology at NYU. Chromatin structure, SMCs, condensin, gene regulation, X chromosomes.
Prof Richard Buggs @RJABuggs
4K Followers 3K Following Senior Research Leader (Plant Health and Adaptation) @KewGardens & Professor of Evolutionary Genomics @QMUL
New Phytologist @NewPhyt
45K Followers 1K Following Publishing, promoting and supporting rigorous plant science and its applications since 1902. Owned by the New Phytologist Foundation (https://t.co/0rmC4dxVNc).
plantevolution.bsky.s.. @PlantEvolution
23K Followers 706 Following Weigel Lab aka WeigelWorld Retweet≠endorsement @MPI_Bio #OpenScience COIs https://t.co/9ZniwHb9c1 GoogleScholar https://t.co/shbRsjfyPR
Matt Rockman @wormsrock
2K Followers 1K Following Evolutionary zoologist & quantitative geneticist @wormsrock.bsky.social
Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Simon J Greenhill @SimonJGreenhill
4K Followers 2K Following I study how languages and cultures evolve. Primarily with phylogenies and other assorted computational methods. Based at @Biology_UoA. Also @[email protected]
Jenn Coughlan @Jenn_Coughlan
4K Followers 3K Following All things evolutionary genetics. Mimulus fanatic, will tolerate flies. Assistant prof @ Yale EEB Non-binary. They/she 🇨🇦🏳️🌈🏳️⚧️ https://t.co/Lur4VEZ1u7
Julia Kreiner @jmkreiner
2K Followers 1K Following Postdoctoral Fellow @ubcbiodiversity. Incoming Ass. Prof @uchicago. Population genomics of contemporary adaptation 🌱 She/her.
Moi Expósito-Alonso .. @MExpositoAlonso
6K Followers 2K Following Researching from mutations to climate change • Prof at @UCBerkeley @Cal + Freeman Hrabowski Scholar @HHMInews • In 💚 w California 🌲🌱 🌵• ✊🏾🏳️🌈 💔🇮🇱🇵🇸
Rebekah Rogers @evolscientist
5K Followers 3K Following Bioinformatics, UNCC, Genetic Novelty. Editor at JEB and MBE.
chiara barbieri @chiarabarbieri_
1K Followers 705 Following Research Group "Human genetic diversity across languages and cultures" at UZH. Molecular anthropology - human (pre)history - language evolution.
Kew Science @KewScience
34K Followers 1K Following 🌍🌿🍄 Understanding and protecting plants and fungi for the well-being of people and the future of all life on Earth #OurFutureIsBotanic
Andrew Kern @pastramimachine
15K Followers 4K Following Evolution, population genetics, machine learning. rhythm section. he/him
Bettina Joy de Guzman @ancientlyric
7K Followers 5K Following https://t.co/niPWGYnKDd… composes Ancient Music. Cosmote TV History host. MA Classics. BA English, Music, Psych, & Classics. CCA-South President
Proper Cloth @ProperCloth
7K Followers 462 Following Custom Clothing. Made Smarter. Tag your photos with #propercloth
Asad Hasan @asadrhasan
83 Followers 148 Following PhD candidate at the Whitlock Lab @ZoologyUBC | @uoftalumni
Bárbara Bitarello, P.. @dudutchy
615 Followers 1K Following Evolution|PopGen, Intersectional feminism, socialism. Neurodivergent. She/her. Prof. at @BrynMawrCollege. Views don’t represent those of my employer 🏳️🌈🇧🇷
John Lovell @_johntlovell
948 Followers 633 Following Evolutionary biologist and outdoor enthusiast | comparative & quantitative genomics (mostly plants) | HudsonAlpha Genome Sequencing Center & Joint Genome Inst.
Wisdom Kaye @modsiwW
527K Followers 128 Following IMG Models Worldwide | Stylist, Model, Director. ⠀ IG @WISDM ⠀Business: [email protected] , [email protected]
Yasuhiro Kadota @Yasu0407
426 Followers 444 Following Senior Research Scientist @ RIKEN CSRS Plant Immunity Research Group. I study how plants recognize pathogens and rapidly induce immune responses.
Cultura y evolución @culturayevol
3K Followers 374 Following Antropólogo. Maestría en filosofía de la ciencia (e). Investigador. 🇵🇪 Publico artículos sobre evolución humana en revistas científicas y en @SurCiencia
Johan A. Stenberg @Stenberg_JA
2K Followers 2K Following Natural scientist™ | Biology Professor @_SLU | Director of @CBC_SLU | Davidshall
Crop History Consorti.. @HistoryCrop
82 Followers 90 Following Crop History Consortium is a group of researchers working on crop production and diffusion in the ancient and medieval world.
Di-Poi Nicolas @NicolasDiPoi
2K Followers 2K Following Evolutionary Developmental Biologist on craniofacial tissues in reptile models 🐍🦎🐢🐊, Research Director @BIOTECH_UH @HiLIFE_helsinki
sevgi mutlu @sevgimutlu80
5K Followers 5K Following Doctoral candidate @CarsonCenter interested in the multispecies studies, interspecies dependencies, fermentation practices, informal food transfers.
EMPSEB29 @EMPSEB29
953 Followers 248 Following The 29th European Meeting for PhD Students in Evolutionary Biology, coming to near Vienna 03 - 07 June 2024!
Microbiology @X_Microbiology
2K Followers 4K Following #Bacteria #Virus #Parasite #Fungi #Microbiological_News_Story #Research #Comment #Communcation
Priyadarshini Chatter.. @CPriyadarshini
2K Followers 1K Following Food Writer. Words in @Mint_Lounge @scroll_in BBC @CNTIndia @Eater @whetstone_mag @enthucutletmag @the_hindu @lonelyplanet_in etc @SussexUni alumni
NatureFutures @NatureFutures
3K Followers 542 Following Science fiction from the home of science. Nature's award-winning SF column - submissions welcome
Yann Bourgeois @bourgeois_yann
864 Followers 1K Following Evolutionary biologist/Molecular ecologist/Population geneticist
SORTEE @sortecoevo
3K Followers 0 Following Society for Open, Reliable, and Transparent Ecology and Evolutionary Biology. @ecoevorxiv is our preprint server. Become a member at https://t.co/Tkl9BYCavL
Joshua Elkington @elkingtonxy
25K Followers 5K Following Founder and General Partner at Axial @axialxyz
Letterform Archive @Lett_Arc
64K Followers 2K Following A nonprofit center for inspiration, education, and community in graphic design and the letter arts. Visit our site to find us on other social platforms.
Mansoor Ali @Mansoor76151245
121 Followers 907 Following Student # Plant biologist#Lover of nature# interested in Plant Development
Pablo Mendieta @Pabster212
664 Followers 1K Following - Plant Guy 🌱 - Genomics/Genetics - Python/R programmer - Graduate Student @UGA - https://t.co/wFVHQn2j1K -
Natanael Spisak @N_t_n__l
247 Followers 775 Following Postdoc studying mutations @Columbia Previously @ENS_ULM
Joshua G. Schraiber�.. @jgschraiber
8K Followers 8K Following Evolution, statistics, software, slacktivism. Once left a tenure track job, but trying to get one again. @docedge85 and @mwpen pay my bills
Markus Stetter @MGStetter
1K Followers 699 Following Group leader at Uni Cologne. Studying genomic patterns of domestication and polygenic adaptation in maize and amaranth.
Museum of Comparative.. @MCZHarvard
4K Followers 284 Following Official feed of the Museum of Comparative Zoology, a private center for research and education at Harvard University. Exhibits of MCZ specimens @HarvardMuseum
The Plant Cell @ThePlantCell
35K Followers 1K Following Leading international society-published journal with fast turnaround time, true peer review by top plant scientists, first-class post-acceptance science editing
Alida van Dijk @AlidavanDijk4
4K Followers 3K Following Plant path, mycology, and CRISPR nerd 🌱🧬| PhD candidate at @Fabiteam1 🔬 | Lover of all things fungi 🍄 | She/her 🏳️🌈 Opinions are my own.
Irina Ćalić Fiebig @calic_irina
496 Followers 480 Following Computational Scientist @Inari_Ag 👩💻 🌻 🌾 | Plant Genetics & Systems Biology | @Mariecurie_alum | @GitHub as icalic
Guy R + Scifind.io @grohkin
1K Followers 5K Following Co-Founder of https://t.co/Y3t9XLCu8k (@sci_find). Molecular Biologist from @IndBio/@Girihlet. Building community to troubleshoot scientific problems #OpenScience 🏳️🌈 🧬
ROTO-RUB @RotoRub
3K Followers 3K Following ROTO Research Group• The Return of the Organism in the Biosciences: Theoretical, Historical, & Social Dimensions 🇩🇪🇲🇽🇦🇷🇫🇮🇺🇸 #PhilSci #PhilBio #HistSTM
The Interested Layper.. @LeniDiamond
6K Followers 2K Following IR/geopol ideology/fascism/populism anthropocene/energy legitimacy oceans Asia 中国 한국 anthro intl law consumption econ/history public opinion Arctic paleo/geo
derek guy @dieworkwear
849K Followers 963 Following Menswear writer. Editor at @putthison. Creator of @RLGoesHard. Bylines at The New York Times, The Washington Post, The Financial Times, Esquire, and Mr. Porter
Kathryn Mercier @kpmercier
1K Followers 2K Following tweeting abt plants, ecology, politics, books, sometimes nonsense | PhD candidate #CarnavalLab & urban forester | views my own | she/they
Sebastián Hernández.. @Sebhgtz
311 Followers 1K Following @SaveFruit_ founder 🥑 we make food last longer with natural and residue-free tech to waste less, sell more and at a better price 🥑
dhen (🌱🌾) @PadillaDhen
52 Followers 91 Following trying to do what feels right @streamclimate prev: @arm
Sunil K. Kenchanmane .. @Sunil_KumarKR
2K Followers 1K Following Postdoc, Birnbaum lab, NYU | Incoming Assistant Professor BPSC UC Riverside | Comparative single-cell omics| First-gen| Cornhusker | Co-founder @plantpostdocs
Jonathan F. Wendel @JonathanFWendel
1K Followers 505 Following Plants, Evolutionary Genomics, Polyploidy, Runner, but mostly Husband, Father and Friend...
Rice research : Open .. @research_rice
951 Followers 5K Following Enthusiastic publisher on research of increasing rice production and value for the poor and to help rice farmers in adapting to climate change.
Artem Lomakin @LomakinAI
384 Followers 276 Following EMBL-EBI @emblebi predoctoral fellow at @MoritzGerstung group studying how cancer cells are evolving in the spatial context
Flora Jay @florajay_
552 Followers 318 Following Researcher @CNRS, LRI/LISN, Paris-Saclay France. Population genetics, stats, machine learning.simulation has been a critical tool for population genetics for some time so it's great to see two recent preprints dealing with some of its thornier issues when using forward in time models
Which tree species to plant, e.g. after large disturbances? They should do well under current climate AND be robust to future climate change. This causes a considerable bottleneck for forest management, we find in a new paper in @NatureEcoEvo. A thread… 🧵nature.com/articles/s4155…
We introduce an ARG-inspired data structure Genotype Representation Graph (GRG) to enable lossless data compression, efficient computation through graph traversal. Developed a fast inference method. Cost ~80 GBP to convert 350TB VCF (200,000 UKBiobank WGS) into 160 GB GRG.
Genotype Representation Graphs: Enabling Efficient Analysis of Biobank-Scale Data biorxiv.org/cgi/content/sh… #bioRxiv
First poster done and dusted at the NYU Neuro Retreat!
From periphery to center stage: 50 years of advancements in innate immunity cell.com/cell/fulltext/…
New paper from the lab! Epigenetic silencing of transposons is widely considered a good resolution of host-TE conflicts, but is it? Especially, we showed that this silencing could lead to harmful local enrichment of repressive marks, even in genes (Huang et al. 2022 eLife). (1/5)
Latest in our resolution of evolutionary conflicts @RSocPublishing special feature: 'Blessing or curse: how the epigenetic resolution of host-transposable element conflicts shapes their evolutionary dynamics' Super cool from Yuheng Huang + @mobilepurin royalsocietypublishing.org/doi/full/10.10…
Exposure to air pollution linked to vehicle exhaust and fossil fuels increased risk of emergency visits and hospitalizations for mental disorders in Hefei, China. The risk declined post-COVID-19 outbreak, possibly due to staying indoors and wearing masks. cutt.ly/HwQiKGyG
scalepopgen: Bioinformatic Workflow Resources Implemented in Nextflow for Comprehensive Population Genomic Analyses buff.ly/3w0k4vb #science #evolution #biology #genome
Malnutrition is common among Rohingya women, with 26.7% of pregnant women being undernourished, likely reflecting that ~64% and 46% of non-pregnant and pregnant women, respectively, have low dietary diversity. Read more: cutt.ly/PwQQbYD8
It's impressive—I knew he was young at the time, but I didn't realize he was an undergraduate student. Next week, we will read this paper, along with a recent one, in our Genetics and Evolution graduate course.
@DalalSci my grandfather was a sophomore when Thomas Hunt Morgan took him into his lab (Fly Room @ Columbia) and as a sophomore he computed the worlds 1st genetic map! sturtevant.com/sturtevant/ahs…
🎉Thrilled to share that I will join the Dept of Botany and Plant Science @UCRiverside in fall 2024 as Asst Prof of Plant Resilience! Couldn't have done this without the sacrifices of my parents, family @drjyothi_kumar & support of mentors @KenBirnbaum @szintri @Rebecca_Roston...
A shift from pleiotropic to modular adaptation revealed by a high-resolution two-step adaptive walk biorxiv.org/cgi/content/sh… #biorxiv_evobio
Why do transposons jump at highly variable rates, and what does that mean to host evolution? In this @AnnualReviews, @texasrulz1, @kweiosis, Yuheng, and I integrated classic pop gen theories and new empirical data to explore this long-standing question. annualreviews.org/content/journa…
icddr,b Senior Scientist Dr. Rubhana Raqib provided commentary in @TheLancet on a promising Phase 1 vaccine trial for typhoid and paratyphoid, highlighting the importance of the vaccine as there is currently none approved for paratyphoid. cutt.ly/rw5lEIGI
A social safety net-based parenting and nutrition programme developed by icddr,b improved the cognitive, language, and motor development of children aged 6-16 months, a new study published in @LancetRH_SEAsia reports. Read more: cutt.ly/sw5lMdRi
cities nowadays are full of this kind of crime (skinny jeans with timbs)
Curious to know what effective population sizes looks like across the globe? Look no further! Out now in Molecular Ecology, our team assessed effective size of wild populations, comparing between taxonomic groups and in relation to the 50/500 rule. bit.ly/3TYrhEa
Two years ago, one of my friends requested that I draw a healthy plant. I therefore painted a striped tulip! hgpenningtonart.co.uk/plants/tulip
Tu amigo el psicoevo:
Sandra the Orangutan started washing her hands after observing her caretakers doing it.
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