Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Prediction of anti-freezing proteins from their evolutionary profile biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

SN-FPN: Self-attention Nested Feature Pyramid Network for Digital Pathology Image Segmentation biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

siRNADesign: A Graph Neural Network for siRNA Efficacy Prediction via Deep RNA Sequence Analysis biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read ... biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

A novel statistical framework for meta-analysis of total mediation effect with high dimensional omics mediators in large-scale ... biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Refining SARS-CoV-2 Intra-host Variation by Leveraging Large-Scale Sequencing Data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

xSiGra: Explainable model for single-cell spatial data elucidation biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Topology-Driven Negative Sampling Enhances Generalizability in Protein-Protein Interaction Prediction biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

MooViE - Engine for single-view visual analysis of multivariate data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

State of the Interactomes: an evaluation of molecular networks for generating biological insights biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Similarity of drug targets to human microbiome metaproteome promotes pharmacological promiscuity biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Identifying key amino acid types that distinguish paralogous proteins using Shapley value based feature subset selection biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Visualizing single-cell data with the neighbor embedding spectrum biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Neural Net Derived Gene Targets For The Nervous System, & Nervous System Derived Hierarchies For The Neural Net biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Loop Catalog: a comprehensive HiChIP database of human and mouse samples biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

PRIMITI: a computational approach for accurate prediction of miRNA-target mRNA interaction biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

GENA-Web - GENomic Annotations Web Inference using DNA language models biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Assessing genome conservation on pangenomegraphs with PanSel biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Cell Simulation as Cell Segmentation biorxiv.org/cgi/content/sh… #biorxiv_bioinfo