Ilia K. @ilya_ibc
postdoctoral fellow at Lund University; Omics bioinformatician interested in immunology; ski and hiking fan Joined September 2012-
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📢 New in @ImmunityCP: We have mapped the transcription factor “routes” that program two dendritic cell subsets opening paths for personalized #cancer #immunotherapy. Read it here: doi.org/10.1016/j.immu… Here is a summary of what we discovered 🧵: Illustration by @azuravesta
Really excited to share our latest preprint, led by @xinniej from the @ArlottaLab and @zhangf Labs (in collaboration with Aviv Regev, @jzlevin, @elisebrobinson, and others), on in vivo Perturb-seq! Thread:
Really excited to share our latest preprint, led by @xinniej from the @ArlottaLab and @zhangf Labs (in collaboration with Aviv Regev, @jzlevin, @elisebrobinson, and others), on in vivo Perturb-seq! Thread:
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains biorxiv.org/cgi/content/sh… #bioRxiv
Or start in @PyTorch with EPFL's deep learning course! fleuret.org/ee559
Or start in @PyTorch with EPFL's deep learning course! fleuret.org/ee559
Tutorials for pseudotime analysis with Monocle 2/3 (@Xiaojie_Qiu, @HPliner, @coletrapnell) and Slingshot (@drisso1893) using kallisto|bustools pre-processing: kallistobus.tools/tutorials.
Can we predict the single-cell transcriptomic state backward or forward over arbitrary time-scales (under certain reasonable assumptions)? We developed dynamo and show this is plausible by predicting long-term evolution of single cell with scSLAM-seq data. biorxiv.org/content/10.110…
9 key CS topics - and the best book and video for learning each of them 🖥 ⌨: bit.ly/2Jcl6qX (credit @BradfieldCS) #mondaymotivation
Pleased to announce the release of our new package Signac today, an extension of Seurat for the analysis of single-cell chromatin data! satijalab.org/signac/
At the Robert Gentleman's 60th Birthday Symposium, Richard Bourgon from @genentech gives a definition of what is a computational biologist: "computational is a modifier, we're biological scientists" #bioc2019
Metabolome signature of #autism in the human prefrontal cortex go.nature.com/2RvpKVe
Back-to-back submission of 2 @humancellatlas sc/snRNAseq Benchmarking Projects: Ding et al. (Levin lab) @broadinstitute biorxiv.org/content/10.110… Single-center study (7 methods) Mereu, Lafzi et al. (Heyn lab) @cnag_eu biorxiv.org/content/10.110… Multi-center project (13 centers)
Back-to-back submission of 2 @humancellatlas sc/snRNAseq Benchmarking Projects: Ding et al. (Levin lab) @broadinstitute biorxiv.org/content/10.110… Single-center study (7 methods) Mereu, Lafzi et al. (Heyn lab) @cnag_eu biorxiv.org/content/10.110… Multi-center project (13 centers)
Several #preprints this year demonstrating chromatin marks and TF mapping in single cells! scDamID&T: biorxiv.org/content/10.110… scCC : biorxiv.org/content/10.110… CUT&Tag: biorxiv.org/content/10.110… ACT-seq: biorxiv.org/content/10.110… #genomics #bioinformatics #SingleCell
I am very proud to publish my first blog post about deep learning in object detection, which I cover the evolution of important methods in recent years. Enjoy! zoey4ai.com/2018/05/12/dee…
Why Batch Effects Matter in Omics Data, and How to Avoid Them cell.com/trends/biotech…
Large-scale design of robust #geneticcircuits with multiple inputs and outputs for mammalian cells go.nature.com/2mIWsq4
Pereira Lab @CellReproLab
2K Followers 1K Following Cell Reprogramming in Hematopoiesis and Immunity. @LuWcmm @Lund_Stem @lunduniversity. Tweets by Filipe Pereira (signed FP) and Malavika Nair (for CFP lab).
Jawnu @Jawnu32901
9 Followers 264 Following
Sebastian @eple_sebastian
65 Followers 799 Following
Kane Foster @KaneFos
490 Followers 802 Following I'm interested in the immune response to cancer. Postdoc at @DanaFarber and @broadinstitute. I also like sci-fi literature & electronic dance music. he/him
Alex Mateo @Alex_Mateo_F
6 Followers 33 Following
Judy @judy_hollingswo
284 Followers 3K Following
Alejo Rodriguez-Frati... @AlejoFraticelli
11K Followers 7K Following Quantitative analysis of aging/cancer heterogeneity - @fraticellilab @icreacommunity @IRBbarcelona @ERC_research @criscancer @CaixaResearch 🇦🇷🇪🇺🇺🇸
Cancer Research Insti... @CancerResearch
31K Followers 5K Following Advancing cancer immunotherapy through research, collaboration and data-driven innovation. Creating a world #Immune2Cancer. Est. 1953.
Igor Adameyko @adameykolab
3K Followers 884 Following Karolinska Institutet / Medical University of Vienna
Jonathan Mitchel @J_E_Mitchel
234 Followers 482 Following PhD candidate at Harvard-MIT HST @mit_hst. Studying cells with computers. Computational biology | Single-cell genomics | Coffee |
Alex Pollen @brainevodevo
986 Followers 793 Following
Abigail Altman @AbigailRAltman
107 Followers 228 Following PhD student at @CellReproLab exploring dendritic cell diversity
Cristiana Pires @_CristianaPires
219 Followers 500 Following CEO and co-founder of Asgard Therapeutics, Cell reprogrammer
Camila Vazquez Echega... @CamilaVazquezE
237 Followers 819 Following Molecular biologist/PhD. Mom & mate addict 🇦🇷 / Postdoc @cellreprolab 🇸🇪 / Change is the only constant/
Nowakowski_Lab @LabNowakowski
3K Followers 1K Following Developmental neurobiologist, using integrative high throughput technologies to study how the cerebral cortex is constructed.
Quaid Morris @quaidmorris
4K Followers 4K Following Computational biology, machine learning, RNA, cancer evolution. My views are my own. He/him.
Biomage @BiomageLtd
1K Followers 4K Following We bring you Cellenics, an open source, user-friendly platform for #scRNAseq data analysis. It's free for researchers! Start your analysis now at https://t.co/h50JI2uoNw
Biosciences @RBiosciences06
200 Followers 723 Following Research & Reviews in BioSciences is an open access Journal which covers all areas of Biology especially related to morphology, physiology and genetics etc.
Cellarity @cellaritybio
2K Followers 474 Following Founded by @FlagshipPioneer, Cellarity is developing medicines through an understanding of cell behaviors.
Jaydeep Bhat @JaydeepBhat
545 Followers 3K Following Group Leader, Interests #SystemImmunology #bioinformatics #epigenomics #GeneRegulation #ChromatinBiology #scOmics ORCID iD: 0000-0002-5123-3125
CodinGene @CodinGene
70 Followers 202 Following Open Community #OpenScience 🧬💻 #Bioinformatics 📊 #Rstats #Python #Rustlang
ONI @oniHQ
3K Followers 4K Following See protein, DNA and RNA molecules that make life work, in nanoparticles, viruses, bacteria, cells and tissue. #superresolution #microscopy
Dmitry Svetlichnyy @dmitry_svetlich
290 Followers 2K Following Head of the Laboratory of Epigenetics in the Centre for Strategic Planning FSBA of Russia
Evan Floden @EvanFloden
1K Followers 2K Following Supporting scientists to adopt modern software tools like git, containers & cloud to do better science. Open Science advocate. Seqera CEO.
Elia Brodsky @eliabrodsky
840 Followers 3K Following
Sangram K Sahu @sangram_ksahu
742 Followers 2K Following Bioinformatics solution architect | Helping understand Genomics data one base pair at a time
RNA-Seq Blog @RNASeqBlog
9K Followers 4K Following Transcriptome Sequencing Research & Industry News
Enhancer/loops paper @loops_enhancers
5K Followers 2K Following #chromatin, #enhancers and #genome_architecture @IvKrivega
Dan McQueen 🇵🇸 @therealmcqueen
518 Followers 928 Following Husband, Dad, Nurse, Implementer, healthcare stuff @mithackmed #Healthcare #RPM #HealthTech #DigitalHealth Tweets my own https://t.co/4Dy6XdbAQd
Pereira Lab @CellReproLab
2K Followers 1K Following Cell Reprogramming in Hematopoiesis and Immunity. @LuWcmm @Lund_Stem @lunduniversity. Tweets by Filipe Pereira (signed FP) and Malavika Nair (for CFP lab).
Next Gen Immunologist... @NImmunologists
923 Followers 347 Following Young immunologists and allergologists in Austria. Founded 2019. Part of @y_efis. Also follow: https://t.co/vErdPmcVJm
Neta Erez- ErezLab�... @ErezNeta
2K Followers 906 Following Prof at the Faculty of Medicine, Tel Aviv University. Enthusiastic about the tumor Microenvironment, studying tumor metastasis, mentor, mom.
Bastian Grossenbacher... @Pseudomanifold
6K Followers 1K Following Dad · Geometry ∩ Topology ∩ Machine Learning · Professor @UniFR · PI @HelmholtzMunich · Prev @ETH_en Feedback? https://t.co/RO3tHLBDx1
Cancer Research Insti... @CancerResearch
31K Followers 5K Following Advancing cancer immunotherapy through research, collaboration and data-driven innovation. Creating a world #Immune2Cancer. Est. 1953.
Alejo Rodriguez-Frati... @AlejoFraticelli
11K Followers 7K Following Quantitative analysis of aging/cancer heterogeneity - @fraticellilab @icreacommunity @IRBbarcelona @ERC_research @criscancer @CaixaResearch 🇦🇷🇪🇺🇺🇸
Julia Joung @JuliaJoung
2K Followers 418 Following Postdoc in the lab of Jonathan Weissman @WhiteheadInst. PhD Feng Zhang lab | @MITdeptofBE | @broadinstitute
Adam Gayoso @adamgayoso
1K Followers 727 Following Machine learning and biology. Research Scientist @GoogleDeepMind. Views are my own.
Oana Ursu (@oana__urs... @oana__ursu
1K Followers 585 Following Group leader, Cell and Tissue Genomics - Oncology, Genentech. Single-cell screens, chromatin and cancer.
Santiago @svpino
426K Followers 512 Following Computer scientist. I teach hard-core AI/ML Engineering at https://t.co/THCAAZcBMu. YouTube: https://t.co/pROi08OZYJ
Schübeler Lab @SchubelerLab
5K Followers 384 Following Studying gene regulation in chromatin @FMIscience
Karolinska Institutet @karolinskainst
41K Followers 175 Following The account has been deactivated. For news about research, visit https://t.co/v49jIndTNs.
jonatcoquet @jonatcoquet
945 Followers 498 Following T helper cell enthusiast interested in allergy and cancer - Leo Foundation Skin Immunology centre UCPH and Karolinska Institutet
Adriano Aguzzi @AdrianoAguzzi
25K Followers 1K Following Fully depreciated prof of neuropathology & mountain biker. Doesn't engage with anonymous accounts.
Pelechano lab @pelechanolab
2K Followers 743 Following Research group at @SciLifeLab @karolinskainst Tweets and opinions by @vpelech we post more often here https://t.co/acb9TsEFTc
Maxim Greenberg @maxvcg
6K Followers 1K Following Group leader @IJMonod. When I say "epigenetics" what I really mean is "DNA methylation". Posting now at 🦋 (https://t.co/H8WTRmjRq5)
Oded Rechavi @OdedRechavi
144K Followers 1K Following Epigenetic Inheritance, Neuroscience & anything biology-related TED: https://t.co/rcOm9TSTf5 Huberman Lab Podcast: https://t.co/xZTNlx9nbi
GonçaloCasteloBranco @GoCasteloBranco
3K Followers 864 Following Professor of Glial Cell Biology @karolinskainst • epigenomics • single-cell • spatial • oligodendrocytes • myelin • multiple sclerosis 🎧 Stella Explorer
Sohrab Shah @SohrabShah
4K Followers 242 Following Computational oncology, cancer genome scientist, single cell dynamics, Memorial Sloan Kettering Cancer Center. Views are my own.
Peter Smibert @psmibert
1K Followers 1K Following Same handle on other site. Vice President, Biology @10xgenomics. Former @nygctech/@nygenome. Views my own 🇦🇺
Marcin Imieliński @skimomiks
2K Followers 337 Following Director of Cancer Genomics, Perlmutter Cancer Center; Associate Professor, NYU Grossman; Attending Pathologist, NYU Langone; Core Member, NYGC, tweets my own
Mario Suva @MarioSuva
3K Followers 377 Following Brain cancer biology. Single-cell genomics. Mass General Hospital. Broad Institute.
Dan Landau @landau_lab
11K Followers 3K Following Somatic evolution, cancer genomics, epigenomics (Weill Cornell/New York Genome Center). Hemato-oncologist (NYP). Discl.: https://t.co/7TBNcbcVCP
Ben Strober @BennyStrobes
424 Followers 237 Following Postdoctoral researcher with Alkes Price at Harvard School of Public Health. Genetic regulation, probabilistic modeling, and some rock climbing.
Vitalii Kleshchevniko... @vitaliikl
2K Followers 1K Following Researcher @bayraktar_lab @StatGenomics @teichlab @sangerinstitute | Physics & AI to study cells, cell circuits & brains 🧠 | #SingleCell+spatial | 🌍🇺🇦to🇬🇧
Marek Bartosovic @marekbartosovic
799 Followers 376 Following 🇸🇰 in 🇸🇪 | PI at DBB, @Stockholm_Uni Chromatin, Epigenetics, Development, Nervous system https://t.co/9lwkLdvKtK
Igor Adameyko @adameykolab
3K Followers 884 Following Karolinska Institutet / Medical University of Vienna
Jonathan Mitchel @J_E_Mitchel
234 Followers 482 Following PhD candidate at Harvard-MIT HST @mit_hst. Studying cells with computers. Computational biology | Single-cell genomics | Coffee |
Bodenmiller lab @BodenmillerLab
2K Followers 167 Following We develop experimental and computational methods to study tumor ecosystems at single-cell level and explore how to target cancer cells @DQBM_uzh and @ETH_DBIOL
JonssonMelanomaLab @jonsson_lab
709 Followers 380 Following Lab at Lund University interested in #melanoma
Tim Stuart @timoast
2K Followers 435 Following Single-cell epigenomics scientist @astar_gis, formerly @nygenome and @uwanews
Tina Termini @CterminiPhD
18K Followers 878 Following Assistant Professor | She/her/hers | Founder @organizolife | Angsty hematologist | I work on/am stress & blood🩸 🦴 🐁 ☢ views ≠ my employer.
Alex Rives @alexrives
10K Followers 906 Following AI for scientific discovery. Broad and MIT. Chief scientist at @EvoscaleAI and founder and scientific director of the ESM project previously @Meta.
Ken Wang @Weixu_Ken_Wang
418 Followers 189 Following Computational Biology, Statistical Mechanism/Machine learning, Single Cell Sequencing, multi-mode integration, PhD student in @fabian_theis lab
antisense. @razoralign
16K Followers 67 Following Between language and causality, ephemeral echoes trace the edge of consciousness— intelligence is a transient footprints. https://t.co/5L9IhaBcRx
Aleks Deczkowska @ADeczk
1K Followers 603 Following Busy @AleksDeLab at Institut Pasteur || single cells and neuro-immune stuff II #newPI #firstgen #ally🏳️🌈🏳️⚧️
Anna Obenauf @obenaufa
7K Followers 1K Following Group leader @IMPvienna, trained @sloan_kettering working on #cancer #tumorimmunology #resistance. Mentor. Mum. Views are my own. Also: @obenaufa.bsky.social
Alex Cagan @ATJCagan
13K Followers 2K Following Researching somatic evolution at the University of Cambridge and Wellcome Sanger Institute. Also a scientific illustrator.
Javier Santoyo @jsantoyo
6K Followers 905 Following Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Alex Pollen @brainevodevo
986 Followers 793 Following
Abigail Altman @AbigailRAltman
107 Followers 228 Following PhD student at @CellReproLab exploring dendritic cell diversity
Teichlab @teichlab
7K Followers 73 Following Using genomics & bioinformatics to decipher immunity @SCICambridge @Cambridge_Uni @humancellatlas
Malte Luecken @MDLuecken
2K Followers 650 Following Luckylab, Computational Biologist, Data integrator, Human Cell Atlasser, Single cell, Lung, Floorballer
David Garfield (@daga... @dagarfield
2K Followers 1K Following Computational biology, regeneration, aging, and evolution at gRED (Genentech). The views expressed here are most definitely my own.
Christina Curtis @cncurtis
3K Followers 1K Following Prof @ Stanford, Precision Oncology & Computational BiologyTrends for United States
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