Sequence-based ML methods (Enformer, ChromBPNet...) are invaluable in genomics but the ecosystem for their *use* after training is less developed. Introducing, `tangermeme`: a PyTorch library for genomics discovery for everything-other-than-the-model. github.com/jmschrei/tange… 1.
5
55
280
38K
166
The MEME suite is a collection of tools that operate on biological sequences/motifs... what more can you discover when you also have a *predictive model* in the mix? This is the central question tangermeme aims to address (and it's namesake). 2.