Kathryn Kauffman @k6logc
Assistant Prof in Dept Oral Biology, School of Dental Medicine @UBuffalo | #phages marine2mouths oceans2oral seas2saliva | @MIT @WHOI alum kauffmanlab.org Buffalo, NY Joined May 2017-
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My lab is up and running and just needs enthusiastic phage biologists to populate it! Contact me or apply in the link if you are interested in a postdoc exploring plasmid-dependent phage biology in beautiful (and super affordable!) upstate New York🍎healthresearch.wd1.myworkdayjobs.com/en-US/HRI_Care… 1/3
If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/ Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/ Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
🎉 Exciting news! We've just published MVP: a Modular Viromics Pipeline 🦠✨ journals.asm.org/doi/epub/10.11…
Spacedust: de novo discovery of conserved gene clusters. Combining sensitive Foldseek structure search and conserved neighborhood detection to discover functionally-associated gene clusters in prokaryotic & viral genomes. 🚀github.com/soedinglab/spa… 📄biorxiv.org/content/10.110… 1/6🧵
It's true, cleaned up my bench today after a memorable 6.5 years in the @baym lab! Very excited to start my own lab next month at the @HealthNYGov Wadsworth Center doing public health adjacent basic research exploring "exotic" bacteriophages!! #newpi
It's true, cleaned up my bench today after a memorable 6.5 years in the @baym lab! Very excited to start my own lab next month at the @HealthNYGov Wadsworth Center doing public health adjacent basic research exploring "exotic" bacteriophages!! #newpi https://t.co/KJSlkc1LgE
New preprint alert!🚀 Excited to share our latest preprint, where we discover a vast arsenal of phage anti-defense proteins using an interpretable machine-learning approach. Big thanks to @MartinPolz, @ShaulPollak, Mariusz Ferenc, and all collaborators! biorxiv.org/content/10.110…
Current MD/PhD with research in metagenomics and phage genomics looking to do basic and translational work in the space. All leads welcome for research residency or post-doc opportunities
Check out the new preprint by Annie Yu @seaweedomics and colleagues on how genome wide selective sweeps structure the human microbiome: biorxiv.org/content/10.110…
🚨🚨 Conference announcement: VEGA 2024 is officially *on* \o/ Will be Nov. 12 - 13, 2024, in Berkeley, in collaboration with NIST. More info to come soon re: speakers, etc, but in the meantime you can already check the provisional agenda and register at jgi.doe.gov/events/vega/
Three’s a crowd: Saccharibacteria episymbiosis modulates phage predation of host bacteria | PNAS pnas.org/doi/10.1073/pn… commentary by Richard Lamont on our recent collabarative work @BatbilegBor @JMcLean_UW @putingdong @LujiaC @ForsythResearch
Excited to share our work: Episymbiotic Saccharibacteria TM7x modulates the susceptibility of its host bacteria to phage infection and promotes their coexistence @JMcLean_UW @BatbilegBor @putingdong @ForsythResearch @JunLiuLab | PNAS pnas.org/doi/10.1073/pn…
Woohoo, our paper on the discovery of 65 new phages dependent on conjugative plasmids is published in it's final form today in @NatureComms ! Here follows a thread (1/ ) link.springer.com/article/10.103…
Congrats to @ac_stanton @sabeti_lab @Harvard Virology PhD graduate successfully defending a tour de force thesis “Massively Parallel Approaches to Functional Characterization of Natural and Engineered VIruses” 🎓🧪 🦠 1/10 🧵
NSURP CALLS FOR AID! Sign up as a mentor at NSURP.org. Please share (but also sign up 😀) #nsurp2024 #nolabnoproblem
New research from @BullmanLab /@CJohnstonLab1, with superstar 1st author @mzepedar, out now in @Nature pinpoints “high-risk” subtype of Fusobacterium nucleatum that dominates the colorectal cancer (CRC) niche in human patient's Link : rdcu.be/dBUjH Tweet🧵below:
Check out some of my thesis work, using protein language models to improve prokaryotic viral protein function prediction, now out in @NatureMicrobiol under the guidance of my amazing advisor @microbegrrl and in collaboration with @steve_biller. doi.org/10.1038/s41564… 1/9
ChatGPT, but make it help me annotate viruses! Our work "Large language models improve annotation of prokaryotic viral proteins" by @einstein_mstp @EinsteinMed grad student extraordinaire @zflam94, and @steve_biller @Wellesley in @NatureMicrobiol rdcu.be/dxcnE (1/11)
👋DefenseFinder news ! Thinking of how we can better help the community, we provide a new website that includes a wiki on defense systems, a structure database and precomputed DefenseFinder results on >22k genomes. defensefinder.mdmlab.fr Preprint: biorxiv.org/content/10.110…
A ten year journey from Boston to Vienna! Thanks to everyone who inspired and helped me along the way and never gave up on me🥹 🍺 to my coauthors @ocean_craig_ @CCorzett @LizKuj @ejalm @MartinPolz
A ten year journey from Boston to Vienna! Thanks to everyone who inspired and helped me along the way and never gave up on me🥹 🍺 to my coauthors @ocean_craig_ @CCorzett @LizKuj @ejalm @MartinPolz
Congrats to Xiaoqian(Annie) Yu @seaweedomics and coauthors for a powerful study that elucidates mechanisms of coexistence of functionally redundant bacteria: academic.oup.com/ismej/article/…
Alexander Harms @AHarms485
9K Followers 5K Following Bacteriophages, dormant bacteria, and bacterial immunity. Assistant Professor of Molecular Phage Biology at ETH Zurich.
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Emily @Thairs9Qm
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modou @modou4997919314
1 Followers 1K Following HELLO everyone worldwide, we call upon your help and support towards our orphanage in Gambia smiling cause of Africa place incase of helping, supporting and don
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MyraTimothy @w563S2WnFG2qh72
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Stefanie Imminger @imminger_s
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Erika Alden DeBenedic... @erika_alden_d
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Seeken @Seeken19
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Dr. Robert Starke @RobStarke_PhD
327 Followers 3K Following 🇩🇪 | PhD UFZ🇩🇪, postdoc EMSL🇺🇲 & MBU🇨🇿, PI MBU🇨🇿 | Biochemistry & ecology 🏜 | Omics & stable isotope probing ✨️ | Archaea, bacteria & fungi🍄🟫
Captivads @captivadsagency
40 Followers 408 Following We help dental practices get more loyal patients & build a very profitable practice. Click the link to request a free dental ad, tailor made for your practice
Theydayt @Theydayt120273
85 Followers 2K Following I'm new to Twitter accounts so I tried the messaging feature and it's great to meet you.
Tanya @techooso40349
80 Followers 2K Following
Yolanda Huang @_YHuang
443 Followers 346 Following Assistant Prof, Microbiology and Immunology @UBuffalo | functional genomics, biochemistry, gut anaerobes, phages | @BerkeleyLab @chemical_phd alums | Hiring!
ISLAM ALMSARRHAD @IslamAlmsarrhad
209 Followers 2K Following A Ph.D Student School of Medicine/University of Szeged.. Hungary Molecular Biology Virology Genomics, Transcriptome and Bioinformatics Long-Read Sequencing
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459 Followers 648 Following PhD Candidate @VirologyHarvard @DanaFarber Kranzusch Lab anti-phage defense, X-ray crystallography, cryo-EM | @BrandeisU alum @sadieantine.bsky.social
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334 Followers 448 Following PhD candidate in the Camilli lab at Tufts Univ studying cholera phage! Looking for phage & microbial genetics friends (she/her)
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407 Followers 316 Following PhD student @SorekLab @WeizmannScience. Researching the arms race between bacteria and phages 🦠🛡⚔️ A proud father of 3 cats. 🏳️🌈
Raj @rajmandage
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nimerta🧬🔬🦠�... @nimerta_k
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Aude Bernheim @AudeBer
5K Followers 720 Following Microbial immunity, genetics, genomics, evolution @institutpasteur. Group leader @Mdmlab_paris Activist for more inclusive sciences
Harmit S. Malik @HarmitMalik
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ASM @ASMicrobiology
91K Followers 280 Following Official account of the American Society for Microbiology. With over 36,000 members, ASM's mission is to promote & advance the microbial sciences.
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bioRxiv Microbiology @biorxiv_micrbio
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Jonathan Eisen @phylogenomics
63K Followers 14K Following Professor @UCDavis studying #phylogenomics & function of microbes & #microbiomes. Other: #BirdPhotography #RedSox #Type1. Past: @harvard @stanford @JohnsHopkins
Michael Baym @baym
22K Followers 2K Following Microbiology, evolution, antibiotic resistance, applied math, molecular biotech. Associate Professor @HarvardMed. Basic research is the engine of progress
Dr. Sabrina Green, Ph... @MotherOfPhage
13K Followers 7K Following #Phage scientist 🇲🇽🇺🇸at @KU_Leuven 🇧🇪 | #Science communicator | Advocate for phage therapy for patients
European Virus Bioinf... @EVirusBioinfC
6K Followers 353 Following Bringing together the excellence of virology and bioinformatics. Meeting: #ViBioM2025
Britt Koskella @bkoskella
6K Followers 2K Following Shuttering this account thanks to Elon Musk’s election interference and stoking of facism at home and abroad. Find me on blue sky at bkoskella for science!
ᐯIᑕTOᖇ ᑎIᘔE... @victornizet
7K Followers 792 Following Physician/Scientist, Bacterial Pathogenesis, Innate Immunity, Experimental ID Rx, Questionable Puns/Memes, Fighting AMR @CHARM_UCSD 🇧🇪🇬🇷🇺🇸🇸🇪
Martha Clokie @MarthaClokie
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5K Followers 810 Following Microbiology, evolution, genomics. Thinking about the ~10^9 bacterial mutations generated in and on you daily. Assoc Prof MIT https://t.co/2mWZNzeXLX
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1K Followers 601 Following biofilmmaker | assistant professor at Carnegie Mellon | opportunistic pathogens in built environment & infection
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4 Followers 22 Following First-gen | PhD candidate | Bridges Lab @CMU_Bio
CMU Biological Scienc... @CMU_Bio
592 Followers 64 Following Official Twitter of the Mellon College of Science Department of Biological Sciences at Carnegie Mellon University
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51 Followers 217 Following Microbiology Nerd | PhD @CMU_Bio @cmuscience | Former Research Assistant (RA) @IITR
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UBuffalo Summer Under... @UBLSAMP
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68 Followers 283 Following
Asher Leeks @AsherLeeks
962 Followers 582 Following I study social evolution in viruses. Assistant Professor @ZoologyUBC. NB I am inactive here - please follow me on bsky: https://t.co/w8hvE4k0jA
OpenAlex @OpenAlex_org
4K Followers 3 Following OpenAlex is an open index of the global research system. Made with ❤️ by @OurResearch_org.
Alexander Hynes @APHage_
984 Followers 495 Following Father of Five. (he/him). Bacteriophages are amazing. Associate Professor, McMaster University.
sabeti_lab @sabeti_lab
5K Followers 472 Following Official Twitter Account for the Sabeti Lab @Harvard & @BroadInstitute. We're currently hiring-- please see our most up-to-date positions on our website!
Allie Stanton @ac_stanton
41 Followers 46 Following viruses do more with less! @harvard Virology PhD student via @MIT in the @sabeti_lab 🏳️🌈
Tera Levin @tera_levin
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334 Followers 448 Following PhD candidate in the Camilli lab at Tufts Univ studying cholera phage! Looking for phage & microbial genetics friends (she/her)
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443 Followers 346 Following Assistant Prof, Microbiology and Immunology @UBuffalo | functional genomics, biochemistry, gut anaerobes, phages | @BerkeleyLab @chemical_phd alums | Hiring!
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48 Followers 79 Following
NatureFutures @NatureFutures
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Zhi Ren @theZhiRen
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145 Followers 292 Following NSF Postdoctoral Fellow | Yale University | PhD Evolutionary Genetics | Structural Variants | Malaker Lab | Mucins
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James McInerney @jomcinerney
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KlebPhaCol @KlebPhaCol
134 Followers 48 Following We are an open-source, barrier-free, and expandable Klebsiella phage and strain collection for your research. By the Nobrega Lab.
Daniela Rothschild @DaniRothschild
567 Followers 529 Following PhD candidate at the University of Southampton - Nobrega lab.
Yishay Pinto @YishayP
358 Followers 541 Following Computational Biologist. Postdoc in Ami Bhatt lab @Stanford
Lena Keller @LenaMLKeller
183 Followers 407 Following PostDoc at Eberl Lab @UZH_Science👩🔬🔬 PhD at Weber-Ban Lab @EWB_Lab @ETH_en 🧪🧬| trash-TV enthusiast 🏃🏻♀️🧗♀️🏳️🌈 (she/her)
Brady Cress @bradyfcress
1K Followers 2K Following Principal Investigator @igisci @UCBerkeley | Microbiome Editing | Postdoc @Doudna_lab | PhD @RPI Chemical & Biological Engineering | Hiring!
Natalia Quinones-Olve... @nquinoneso
837 Followers 793 Following Postdoc at the Zhang Lab @BroadInstitute @MIT | Previously PhD @baym Lab | Mobile Genetic Elements, Bioinformatics | Amphibious (wet + dry)
Bent Petersen @bentpetersen
880 Followers 765 Following Senior Researcher in computational phage discovery - GLOBE Institute at the University of Copenhagen, UCPH, https://t.co/irbcNNwN1s
Martin J Loessner @MartinLoessner
1K Followers 307 Following Professor of #Microbiology @ETH_en Zurich. Likes #Bacteriophage #Phagetherapy #Endolysin #Listeria #Staphylococcus #L_form bacteria & #Flyfishing ! Views my own
Léa Zinsli @LeaZinsli
105 Followers 292 Following Postdoc @umontreal; PhD from @ETH Engineering of novel phage-based #antimicrobials. In love with the Arctic❄️ and nature. 📷Hobby photographer
Tiffany Luong @scientiff
941 Followers 1K Following 👩🏻🔬 postdoc in the Roach Lab (@phage_bio)! 🦠🎓 PhD from SDSU/UCSD | ARCS Alumni | 🕹🐱🧪 she/her
Dr Claire Elek @Clarika84
706 Followers 880 Following Research associate @TheQuadram. PhD in #bacteriophages & #Klebsiella 🦠. @CBRB_Imperial MRes alumna. Enjoys cats 🐱 & mountains 🏔. She/her.
Ali Asif @asif00663274
321 Followers 4K Following veterinarian # PhD Scholar # Studying Drug Gut Microbiota interactions .
RevathyKrishnamurthi @Revathykri
291 Followers 239 Following Phage biologist| Research Scientist| Mother of two curious minds | Views my own & retweets are not endorsements. @revathykri.bsky.social
César Salazar Hoyos.... @CesarSHoyos1
237 Followers 2K Following Egresado de la escuela de Microbiología y Parasitología en UNMSM, luchando por mis metas con esperanza
Bartłomiej Grygorcew... @b_grygorcewicz
1K Followers 767 Following #bacteriophages and #superbugs cells biology enthusiast | interested in #phages #antibiotics #AMR and #biofilms | @pumszczecin
Prasanth Manohar, PhD... @DrPrasanthM
1K Followers 1K Following Phage Biologist.👨🏼🔬 PDRA at Young lab, CPT, TAMU | ssRNA phage, phage lysis system, Phage therapy, AMR | Author, Editor | தமிழன்🇮🇳🇺🇸
Women In Bacteriophag... @Women_In_phage
2K Followers 687 Following A haven for all female bacteriophage researchers across the globe 🌏 👩🔬 #bacteriophage #Phage_Therapy #WomenInSTEM #WomenInPhage💫✉️[email protected]
Andrew Sue @PhageSUEpreme
161 Followers 172 Following Phage researcher and Ph.D student at San Diego State University.
Shweta Bhatt @proteinsnpixels
374 Followers 754 Following Formerly @NMITaylorLab @UCPH_CPR @uni_copenhagen. 🔎 phages & cryoEM.
Inga Songailiene @IngaTrails
772 Followers 1K Following Biochemist, PhD 🇱🇹 | Postdoc at UCPH 🇩🇰 Taylor lab | CRISPR-Cas, TA systems, structural bio (X-ray, cryo-EM). Runs, black humor 🏃👟💣
Afif Pranaya Jati @afifpj
1K Followers 3K Following Facultative Bioinformatician,Ph.D. candidate at @LithgowLab @MonashBDI |PhageHunter|Klebsiella pneumoniae #KlebClub
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