Kathryn Kauffman @k6logc
Assistant Prof in Dept Oral Biology, School of Dental Medicine @UBuffalo | #phages marine2mouths oceans2oral seas2saliva | @MIT @WHOI alum kauffmanlab.org Buffalo, NY Joined May 2017-
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My lab is up and running and just needs enthusiastic phage biologists to populate it! Contact me or apply in the link if you are interested in a postdoc exploring plasmid-dependent phage biology in beautiful (and super affordable!) upstate New York🍎healthresearch.wd1.myworkdayjobs.com/en-US/HRI_Care… 1/3
If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/ Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/ Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
🎉 Exciting news! We've just published MVP: a Modular Viromics Pipeline 🦠✨ journals.asm.org/doi/epub/10.11…
Spacedust: de novo discovery of conserved gene clusters. Combining sensitive Foldseek structure search and conserved neighborhood detection to discover functionally-associated gene clusters in prokaryotic & viral genomes. 🚀github.com/soedinglab/spa… 📄biorxiv.org/content/10.110… 1/6🧵
It's true, cleaned up my bench today after a memorable 6.5 years in the @baym lab! Very excited to start my own lab next month at the @HealthNYGov Wadsworth Center doing public health adjacent basic research exploring "exotic" bacteriophages!! #newpi
It's true, cleaned up my bench today after a memorable 6.5 years in the @baym lab! Very excited to start my own lab next month at the @HealthNYGov Wadsworth Center doing public health adjacent basic research exploring "exotic" bacteriophages!! #newpi https://t.co/KJSlkc1LgE
New preprint alert!🚀 Excited to share our latest preprint, where we discover a vast arsenal of phage anti-defense proteins using an interpretable machine-learning approach. Big thanks to @MartinPolz, @ShaulPollak, Mariusz Ferenc, and all collaborators! biorxiv.org/content/10.110…
Current MD/PhD with research in metagenomics and phage genomics looking to do basic and translational work in the space. All leads welcome for research residency or post-doc opportunities
Check out the new preprint by Annie Yu @seaweedomics and colleagues on how genome wide selective sweeps structure the human microbiome: biorxiv.org/content/10.110…
🚨🚨 Conference announcement: VEGA 2024 is officially *on* \o/ Will be Nov. 12 - 13, 2024, in Berkeley, in collaboration with NIST. More info to come soon re: speakers, etc, but in the meantime you can already check the provisional agenda and register at jgi.doe.gov/events/vega/
Three’s a crowd: Saccharibacteria episymbiosis modulates phage predation of host bacteria | PNAS pnas.org/doi/10.1073/pn… commentary by Richard Lamont on our recent collabarative work @BatbilegBor @JMcLean_UW @putingdong @LujiaC @ForsythResearch
Excited to share our work: Episymbiotic Saccharibacteria TM7x modulates the susceptibility of its host bacteria to phage infection and promotes their coexistence @JMcLean_UW @BatbilegBor @putingdong @ForsythResearch @JunLiuLab | PNAS pnas.org/doi/10.1073/pn…
Woohoo, our paper on the discovery of 65 new phages dependent on conjugative plasmids is published in it's final form today in @NatureComms ! Here follows a thread (1/ ) link.springer.com/article/10.103…
Congrats to @ac_stanton @sabeti_lab @Harvard Virology PhD graduate successfully defending a tour de force thesis “Massively Parallel Approaches to Functional Characterization of Natural and Engineered VIruses” 🎓🧪 🦠 1/10 🧵
NSURP CALLS FOR AID! Sign up as a mentor at NSURP.org. Please share (but also sign up 😀) #nsurp2024 #nolabnoproblem
New research from @BullmanLab /@CJohnstonLab1, with superstar 1st author @mzepedar, out now in @Nature pinpoints “high-risk” subtype of Fusobacterium nucleatum that dominates the colorectal cancer (CRC) niche in human patient's Link : rdcu.be/dBUjH Tweet🧵below:
Check out some of my thesis work, using protein language models to improve prokaryotic viral protein function prediction, now out in @NatureMicrobiol under the guidance of my amazing advisor @microbegrrl and in collaboration with @steve_biller. doi.org/10.1038/s41564… 1/9
ChatGPT, but make it help me annotate viruses! Our work "Large language models improve annotation of prokaryotic viral proteins" by @einstein_mstp @EinsteinMed grad student extraordinaire @zflam94, and @steve_biller @Wellesley in @NatureMicrobiol rdcu.be/dxcnE (1/11)
👋DefenseFinder news ! Thinking of how we can better help the community, we provide a new website that includes a wiki on defense systems, a structure database and precomputed DefenseFinder results on >22k genomes. defensefinder.mdmlab.fr Preprint: biorxiv.org/content/10.110…
A ten year journey from Boston to Vienna! Thanks to everyone who inspired and helped me along the way and never gave up on me🥹 🍺 to my coauthors @ocean_craig_ @CCorzett @LizKuj @ejalm @MartinPolz
A ten year journey from Boston to Vienna! Thanks to everyone who inspired and helped me along the way and never gave up on me🥹 🍺 to my coauthors @ocean_craig_ @CCorzett @LizKuj @ejalm @MartinPolz
Congrats to Xiaoqian(Annie) Yu @seaweedomics and coauthors for a powerful study that elucidates mechanisms of coexistence of functionally redundant bacteria: academic.oup.com/ismej/article/…
Alexander Harms @AHarms485
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modou @modou4997919314
1 Followers 1K Following HELLO everyone worldwide, we call upon your help and support towards our orphanage in Gambia smiling cause of Africa place incase of helping, supporting and don
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Stefanie Imminger @imminger_s
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Erika Alden DeBenedic... @erika_alden_d
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Seeken @Seeken19
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idol2vec @deugledeugle
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Dr. Robert Starke @RobStarke_PhD
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Captivads @captivadsagency
43 Followers 407 Following We help dental practices get more loyal patients & build a very profitable practice. Click the link to request a free dental ad, tailor made for your practice
Theydayt @Theydayt120273
82 Followers 2K Following I'm new to Twitter accounts so I tried the messaging feature and it's great to meet you.
Tanya @techooso40349
81 Followers 2K Following
Yolanda Huang @_YHuang
441 Followers 346 Following Assistant Prof, Microbiology and Immunology @UBuffalo | functional genomics, biochemistry, gut anaerobes, phages | @BerkeleyLab @chemical_phd alums | Hiring!
ISLAM ALMSARRHAD @IslamAlmsarrhad
208 Followers 2K Following A Ph.D Student School of Medicine/University of Szeged.. Hungary Molecular Biology Virology Genomics, Transcriptome and Bioinformatics Long-Read Sequencing
Sadie Antine @sadie_antine
455 Followers 644 Following PhD Candidate @VirologyHarvard @DanaFarber Kranzusch Lab anti-phage defense, X-ray crystallography, cryo-EM | @BrandeisU alum @sadieantine.bsky.social
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335 Followers 448 Following PhD candidate in the Camilli lab at Tufts Univ studying cholera phage! Looking for phage & microbial genetics friends (she/her)
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410 Followers 318 Following PhD student @SorekLab @WeizmannScience. Researching the arms race between bacteria and phages 🦠🛡⚔️ A proud father of 3 cats. 🏳️🌈
nimerta🧬🔬🦠�... @nimerta_k
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Alexander Harms @AHarms485
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91K Followers 280 Following Official account of the American Society for Microbiology. With over 36,000 members, ASM's mission is to promote & advance the microbial sciences.
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bioRxiv Microbiology @biorxiv_micrbio
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Dr. Sabrina Green, Ph... @MotherOfPhage
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European Virus Bioinf... @EVirusBioinfC
6K Followers 352 Following Bringing together the excellence of virology and bioinformatics. Meeting: #ViBioM2025
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6K Followers 2K Following Shuttering this account thanks to Elon Musk’s election interference and stoking of facism at home and abroad. Find me on blue sky at bkoskella for science!
ᐯIᑕTOᖇ ᑎIᘔE... @victornizet
7K Followers 792 Following Physician/Scientist, Bacterial Pathogenesis, Innate Immunity, Experimental ID Rx, Questionable Puns/Memes, Fighting AMR @CHARM_UCSD 🇧🇪🇬🇷🇺🇸🇸🇪
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5K Followers 942 Following Professor of microbiology at the University of Leicester. Particularly interested in all things phage related especially ecology, evolution, and phage therapy.
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UBuffalo Summer Under... @UBLSAMP
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Asher Leeks @AsherLeeks
958 Followers 581 Following I study social evolution in viruses. Assistant Professor @ZoologyUBC. NB I am inactive here - please follow me on bsky: https://t.co/w8hvE4k0jA
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4K Followers 3 Following Building a universal, open library of scholarly information. Also makers of @unpaywall and @unsub_org
Alexander Hynes @APHage_
983 Followers 494 Following Father of Five. (he/him). Bacteriophages are amazing. Associate Professor, McMaster University.
sabeti_lab @sabeti_lab
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41 Followers 46 Following viruses do more with less! @harvard Virology PhD student via @MIT in the @sabeti_lab 🏳️🌈
Tera Levin @tera_levin
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335 Followers 448 Following PhD candidate in the Camilli lab at Tufts Univ studying cholera phage! Looking for phage & microbial genetics friends (she/her)
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441 Followers 346 Following Assistant Prof, Microbiology and Immunology @UBuffalo | functional genomics, biochemistry, gut anaerobes, phages | @BerkeleyLab @chemical_phd alums | Hiring!
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148 Followers 291 Following NSF Postdoctoral Fellow | Yale University | PhD Evolutionary Genetics | Structural Variants | Malaker Lab | Mucins
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James McInerney @jomcinerney
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KlebPhaCol @KlebPhaCol
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Daniela Rothschild @DaniRothschild
568 Followers 529 Following PhD candidate at the University of Southampton - Nobrega lab.
Yishay Pinto @YishayP
358 Followers 542 Following Computational Biologist. Postdoc in Ami Bhatt lab @Stanford
Lena Keller @LenaMLKeller
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Brady Cress @bradyfcress
1K Followers 2K Following Principal Investigator @igisci @UCBerkeley | Microbiome Editing | Postdoc @Doudna_lab | PhD @RPI Chemical & Biological Engineering | Hiring!
Natalia Quinones-Olve... @nquinoneso
834 Followers 792 Following Postdoc at the Zhang Lab @BroadInstitute @MIT | Previously PhD @baym Lab | Mobile Genetic Elements, Bioinformatics | Amphibious (wet + dry)
Bent Petersen @bentpetersen
880 Followers 764 Following Senior Researcher in computational phage discovery - GLOBE Institute at the University of Copenhagen, UCPH, https://t.co/irbcNNwN1s
Martin J Loessner @MartinLoessner
1K Followers 304 Following Professor of #Microbiology @ETH_en Zurich. Likes #Bacteriophage #Phagetherapy #Endolysin #Listeria #Staphylococcus #L_form bacteria & #Flyfishing ! Views my own
Léa Zinsli @LeaZinsli
105 Followers 290 Following Postdoc @umontreal; PhD from @ETH Engineering of novel phage-based #antimicrobials. In love with the Arctic❄️ and nature. 📷Hobby photographer
Tiffany Luong @scientiff
941 Followers 1K Following 👩🏻🔬 postdoc in the Roach Lab (@phage_bio)! 🦠🎓 PhD from SDSU/UCSD | ARCS Alumni | 🕹🐱🧪 she/her
Dr Claire Elek @Clarika84
707 Followers 878 Following Research associate @TheQuadram. PhD in #bacteriophages & #Klebsiella 🦠. @CBRB_Imperial MRes alumna. Enjoys cats 🐱 & mountains 🏔. She/her.
Ali Asif @asif00663274
321 Followers 4K Following veterinarian # PhD Scholar # Studying Drug Gut Microbiota interactions .
RevathyKrishnamurthi @Revathykri
292 Followers 239 Following Phage biologist| Research Scientist| Mother of two curious minds | Views my own & retweets are not endorsements. @revathykri.bsky.social
César Salazar Hoyos.... @CesarSHoyos1
237 Followers 2K Following Egresado de la escuela de Microbiología y Parasitología en UNMSM, luchando por mis metas con esperanza
Bartłomiej Grygorcew... @b_grygorcewicz
1K Followers 767 Following #bacteriophages and #superbugs cells biology enthusiast | interested in #phages #antibiotics #AMR and #biofilms | @pumszczecin
Prasanth Manohar, PhD... @DrPrasanthM
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Women In Bacteriophag... @Women_In_phage
2K Followers 689 Following A haven for all female bacteriophage researchers across the globe 🌏 👩🔬 #bacteriophage #Phage_Therapy #WomenInSTEM #WomenInPhage💫✉️[email protected]
Andrew Sue @PhageSUEpreme
161 Followers 172 Following Phage researcher and Ph.D student at San Diego State University.
Shweta Bhatt @proteinsnpixels
373 Followers 754 Following Formerly @NMITaylorLab @UCPH_CPR @uni_copenhagen. 🔎 phages & cryoEM.
Inga Songailiene @IngaTrails
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