WebFlaGs @webflags1

Status and examples from https://t.co/0V6todXpX6, an Atkinson lab tool. Is your pet protein encoded in a conserved neighbourhood? 🚩🚩🏴‍☠️🚩🚩 Tweets by @gem__atkinson webflags.se Umeå University Joined May 2020

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WebFlaGs @webflags1

a year ago

We had an issue with webFlaGs and uORF4u jobs getting stuck in the input validation step, but should be working fine now

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Gemma C Atkinson @gem__atkinson

a year ago

We are looking for a new PhD student to join us on our adventures in computational sequence and structural analyses of bacteriophage proteins atkinson-lab.com/phd-position-a… You will be part of the new and exciting @scilifelab DDLS research school

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WebFlaGs @webflags1

a year ago

Please use this link to access webflags at the moment server.atkinson-lab.com/webflags Something up with the forwarding for the .se domain

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WebFlaGs @webflags1

2 years ago

Hurray, we’ve fixed it! Webflags.se is taking submissions again!

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Christoph Elfmann @c_elfmann

2 years ago

An interactive visualization of conserved gene neighborhoods now on corewiki.uni-goettingen.de (#SubtiWiki's next version)! It features clusters created with @webflags1 . Big thanks to Tom Nowak for his work and @gem__atkinson for the great FlaGs tool! @IMPRS_GS #bacillus #MOTY

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WebFlaGs @webflags1

2 years ago

Looks like the @NCBI protein database is a bit wobbly this morning. webFlaGs might be slow and/or submissions might fail.

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LU-Fold @LU_Fold

2 years ago

Hello! LU-Fold now has an X presence! We are a Lund University facility for high throughput protein complex structure prediction. Follow for updates and click here for more info and request support atkinson-lab.com/lu-fold/

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WebFlaGs @webflags1

2 years ago

That’s great to hear, thank you for the update!

NCBI @NCBI

2 years ago

That’s great to hear, thank you for the update!

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WebFlaGs @webflags1

2 years ago

We're having more slow and failed jobs than usual today due to getting a lot of the dreaded Bad Gateway errors for @NCBI searches. Hoping it's 'just one of those days'...

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WebFlaGs @webflags1

2 years ago

Just a heads up that there's currently an @NCBI bug affecting FlaGs: some valid RefSeq accessions are not associated with their corresponding assembly IDs in the Identical Protein Group (IPG) data. I'm in contact with the lovely people at NCBI Support and hoping for a fix soon 🤞

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WebFlaGs @webflags1

2 years ago

We now have representative seq blastp integrated into the new webFlaGs submission form made by @art_egorov, and it feels time to redirect webflags.se there! The classic page is still currently accessible at classic.webflags.se

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WebFlaGs @webflags1

3 years ago

If you have problems reaching the classic submission page today, try our new one instead server.atkinson-lab.com/webflags

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Gemma C Atkinson @gem__atkinson

3 years ago

Here we go! A network of toxin-antitoxins, AlphaFold-modelling of thousands of complexes, experimentally validation, and discoveries about TA neutralisation and relationships to phage defence systems on the way biorxiv.org/content/10.110… @Lundsuni @medfak_LU @KAWstiftelsen

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WebFlaGs @webflags1

3 years ago

The old webFlaGS submission system is getting through a queue after a crash. No better time to try our new server: server.atkinson-lab.com/webflags

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WebFlaGs @webflags1

3 years ago

We're testing a new webFlaGs submission page and more stable queueing system made by PhD student @art_egorov. Give it a try and let us know what you think! server.atkinson-lab.com/webflags

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Gemma C Atkinson @gem__atkinson

3 years ago

Excited to announce that through @art_egorov's hard work we have a server version of uORF4u for uORF/leader peptide prediction server.atkinson-lab.com/uorf4u Artyom has also made a home page for the Atkinson lab tools, including his MSA4u alignment visualiser server.atkinson-lab.com