BioContainers @BioContainers
A community-driven project to create and manage bioinformatics software containers BioContainers.pro Cambridge, England Joined August 2015-
Tweets355
-
Followers885
-
Following42
-
Likes432
Exciting news! #SAGE is now integrated into quantms.org, thanks to the amazing @OpenMSTeam and @michaellazear. Joining COMET (The STABLE) and MSGF (the Deeper), SAGE brings its speed, efficiency, and youthful vibe to #quantms. Let's celebrate at #HUPO2023! 🎉
✨ In 2022, there is a total of 496 services within #ELIXIR. Including: #LSLogin #ELIXIRAAI @FAIRsharing_org #ELIXIRTeSS @BioContainers #BioTools 👀 Find out more in our 2022 annual report: elixir-europe.org/sites/default/…
#quantms is now a #preprint. quantms: A cloud-based pipeline for #proteomics reanalysis enables the quantification of 17521 proteins in 9,502 human samples. researchsquare.com/article/rs-300… Thanks to @OpenMSTeam @DemichevLab, @nf_core, @BioContainers, #BioConda and @nextflowio team’s. 🧵
Very excited to partner with Genomics England on this one.
Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉 Watch now on YouTube: youtube.com/watch?v=hOuS6m…
Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉 Watch now on YouTube: youtube.com/watch?v=hOuS6m…
Our paper "Automated Discovery of Container Executables" is published in the Journal of Open Research Software! 👉 doi.org/10.5334/jors.4…. This was fun work with @MarcoDeLa83 and Audrey Stott from @PawseyCentre , @mathgeorgia, and Matthieu Muffato of @sangerinstitute.
We created automated pipelines that would not only discover new @BioContainers to add to our online registry, but also executables of interest inside! Our journey included new software, databases, and automation to help developers maintain their own registries. Each of these...
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.
Time for release 🚀. Let me introduce you to the PRIDE Archive USI Viewer @pride_ebi ebi.ac.uk/pride/archive/…. A Spectrum Viewer for every MS in PRIDE Archive. 🧵
Hi there. Today we have written a full tutorial about how to download data from @pride_ebi (ebi.ac.uk/pride/markdown…). We have now 4 options: https, FTP, Aspera, and the new streaming service. 🧵
Would you be interest in a introduction paper about how to use AI tools like Github Copilot in Bioinformatics software development?
I'm so happy today. An open-source, community project I have been contributing for so long from the begining continues flying high. aws.amazon.com/blogs/hpc/bioc…
Announcement at #NextflowSummit - @BioContainers available in ECR @awscloud #container registry aws.amazon.com/blogs/hpc/bioc…
Really excited to announce this one - we've been working with the @BioContainers group to make all of their images available on ECR Public Gallery. This means that bioinformatics containers will not be subject to throttling on AWS. Nice. aws.amazon.com/blogs/hpc/bioc…
Shoutout to @BioContainers for making computing on the cloud easy 😀 More biologist should be using containerized software, and more trainees should be taught how to use it. (or learn on their own)
If you want to learn about the three leading cloud solutions for proteomics data analysis, make sure you register for this workshop. @galaxyproject #TPP @nextflowio #quantms abrf.org/workshops-webi… #Proteomics #MSProteomics #Cloud
Friendly reminder every tool submitted to Bioconda also gets a Docker container from @BioContainers and a Singularity image from @galaxyproject
Friendly reminder every tool submitted to Bioconda also gets a Docker container from @BioContainers and a Singularity image from @galaxyproject
The @MyABRF Cloud Computing Workshop Registration is Now Open: abrf.memberclicks.net/cloudcomputing… #nextflow #TransProteomicPipeline #usegalaxy
Making @BioContainers compatible with M1 Mac ARM architecture is really important for my work going forwards -- anyone else? github.com/BioContainers/…
If you are interested in collaborating using the workflow, please contact us. !!!!
Jason "boundless deli... @JasonWilliamsNY
6K Followers 4K Following Asst. Dir. @DNALC @CSHL/ @CyVerseOrg /@thecarpentries/#AreciboC3/ #Foodie #ClassicalMusic #StarTrek /lifescitrainers.org —my own opinions.
Bérénice Batut @bebatut
1K Followers 733 Following She/her. Researcher & Instructor in Bioinformatics. @openlifesci, @gxytraining. Mother. @[email protected]
Nextflow @nextflowio
5K Followers 30 Following The leading open source orchestrator for containerized, data-intensive pipelines on any infrastructure at any scale.
Andy Jones @andy___jones
1K Followers 729 Following Views my own, and not representative of any employer; Bioinformatics prof; that's three underscores in my handle ;-)
Mick W@tson ↙️ @BioMickWatson
29K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.
Galaxy Project @galaxyproject
13K Followers 8K Following Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @[email protected]
Tom Kelly ケリー�... @tomkXY
3K Followers 3K Following Kiwi. Dad. Bioinformatician. Data Evangelist. Survived 7 years in Japan. Fun at Parties. @otago PhD. All opinions my own. #Rstats #genomics #autistic
Jeremy Leipzig @jermdemo
2K Followers 2K Following Bioinformatics engr & pop gen product mgmt. O'author, PhD, 4x startup survivor. Pipelines, metadata, genomics, reproducible research. Gen X.
MetaMorpheus @metamor... @Smith_Chem_Wisc
2K Followers 568 Following Lloyd Smith Research Group Committed to free, open-source software for proteomics in both Windows and Linux. And you won't need a comp sci degree to use it!!
ELIXIR Europe @ELIXIREurope
10K Followers 1K Following Research infrastructure bringing together Europe's #bioinformatics resources. Store, analyse, share, & reuse data
MentorCapitalist @mentorcapital1
3K Followers 6K Following We have AI breakfasts meetings weekly Tuesday's DM for location in 805 area https://t.co/yXOeKIJy4t
@riccardobaroncelli.b... @R_Baroncelli
1K Followers 2K Following Professor in Plant Pathology @Unibo previously @usal, @UBO_UnivBrest, @warwickuni & @Unipisa | visiting @uniofbeds & @usponline #fungi #evolution #genetics
Muhammad @Muhammad1026378
1 Followers 758 Following
Mohan Atreya @MohanAtreya
236 Followers 2K Following Chief Product Officer - Rafay Systems, ex-Okta, ex-RSA, ex-Cisco, ex-McAfee
Charles Pan @pan16162
113 Followers 517 Following
Jeff Terstriep @jterstriep
88 Followers 298 Following Interests: HPC-cloud hybrids, data management, spatial data and GIS
Jun Du @dujun001
111 Followers 2K Following
muhammad ibrahim 🧬... @MD_IBRAHIM2211
214 Followers 2K Following #Cancer_research #RNAseq #transcriptomics
Nafees @Nafees1713271
0 Followers 26 Following
Niole Nelson @NioleNelson
6 Followers 12 Following
Nat Vilor-Tejedor @natvilortejedor
2K Followers 3K Following #GeneticEpi #Integromics #BioStats #Exposomics | RyC and Gates Sr. Fellow @AlzData | ♀️🧬👩🏽💻🌈🏞️
Kaya Containers @Kaya_Containers
167 Followers 3K Following La cuenta oficial de Kaya Containers. Una empresa líder en soluciones modulares, donde encontrarás los principales modelos de contenedores marítimos.
Sathish Kumar @sathishgenomics
154 Followers 3K Following Genomist exploring the life through Molecular Biology|Sequence Data Analysis & Bioinformatics 💻|Scientific Illustration | Genomics Cloud Computing | Blender 3D
Karl Makepeace @ionsbyfriday
195 Followers 2K Following Proteomics 🩸 Mass Spectrometry ✨ Structural & Network Biology 🧬🕸️ Bioinformatics 💻 Canada 🍁 @Columbia 🗽 https://t.co/xeXI0yPqpm 🦋
Melike Dönertaş @melikedonertas
5K Followers 1K Following Junior Group Leader @LeibnizFLI prev @EMBOFellows @MPIAGE @Cambridge_Uni @EMBLEBI @METU_ODTU @iscb @ekoevoder #aging #bioinformatics #microbiome #rstats
Chanumolu Hari Gopala... @hari_chanumolu
19 Followers 189 Following
Mateus Falco @mateuslfalco
656 Followers 427 Following PhD Student | Bioinformatic | NGS |Microbiology | Molecular Biology | Nextflow Ambassador
Alfredo Hernandez @ajhax
115 Followers 730 Following
Anway @GawGao36293
1 Followers 26 Following
Bernd Herding @bernd_herding
161 Followers 161 Following Senior Solutionist. I solve problems. Not necessarily real ones. Or sometimes. But I‘m trying. Tweets in german and english.
Michael Corona @MikeZippyCorona
27 Followers 713 Following
Vitor Paiva @euvitorpaiva
2 Followers 134 Following
Rania 👩🔬🔬... @Rania20228
1K Followers 5K Following أحب نفسك واطمئن عليها❤️❤️❤️. Getting the BEST of this LIFE is a Challenge, dans Mon Bon Coin 🙏❤️ Human🌍🤍 Biology
Mathavan Muthaiyan @MathavanBioinfo
297 Followers 3K Following Scientist, ICMR-NIE Chennai & Casual Announcer in ALL INDIA RADIO
Mike Liu @MikeLiuAir
0 Followers 39 Following
Sameesh Kher @khersameesh24
34 Followers 259 Following Bioinformatician & Scientific Workflow Developer @StatGenomics @DKFZ | The German Human Genome-Phenome Archive @GHGA_DE | 🔬🧬🏋🏻 | #Bioinformatics #AI #ML
Ivan Valdes @idvb87
4 Followers 46 Following
Lucio Queiroz @luciorqueiroz
56 Followers 210 Following Sequencing, RNA Biology, Data Science & Cats | Computational and Systems Pathology @ WCM
Bioinformatics at UM6... @BioinfoAtUM6P
302 Followers 2K Following The Bioinformatics Laboratory at UM6P conducts research in bioinformatics, computational biology, and computational chemistry.
Barbara @BarbaraVerhaar
107 Followers 318 Following
Ryan Kosai @rkosai
443 Followers 1K Following CTO @readysetpotato, an autonomous research agent for biology. 20 years in software, principal engineer, 3x CTO.
Seeken @Seeken19
275 Followers 4K Following # MD simulation, and drug discovery. Open for Ph.D. positions
Ian Liu 劉以恆 @duckiesfloat
62 Followers 1K Following MS @BrownBiostats | Data Science Graduate & Classical Chinese Dancer @FTCNorthern | 🇺🇸🇹🇼
Tim Dallman @TimDallman
2K Followers 1K Following Senior Technical Officer @WHO - Pathogen Genomics & Bioinformatics
Katsiaryna Davydzenka @KDavydzenka
4 Followers 53 Following
sarafdco @sarafdco
18 Followers 343 Following Genetics PhD student in Hematological Genetics Laboratory, Instituto de Investigación Sanitaria Gregorio Marañón
Karel Břinda @KarelBrinda
1K Followers 2K Following ‖Permanent Researcher/INRIA Start. Faculty | @INRIA/@IRISA_lab Rennes‖ BioInfo/CompBio: algorithms, genomics, rapid diagnostics, pathogens & antib. resistance
Louis Le Nézet @LouisLeNezet
2 Followers 38 Following
Conrad Williams @PopGen_
35 Followers 270 Following He/Him. Bad at Twitter. Interested in genetics/genomics, ecology, and science in general. Striving to improve myself and my work even when progress feels slow.
Shivang Bhanushali @ShivangPB
831 Followers 4K Following
Abdoallah Sharaf @abdo_3a
149 Followers 406 Following Senior Bioinformatician at SequAna, @UniKonstanz genomic evolutionist & bioinformatic geek
EMBL-EBI @emblebi
73K Followers 573 Following EMBL-EBI provides open biological data resources and tools, and performs basic research in computational biology. https://t.co/wA8UjwM0hd
Björn Grüning @bjoerngruening
1K Followers 427 Following This account is not used anymore: Please find me at https://t.co/GkgOyIRb4r (@[email protected] )
Mick W@tson ↙️ @BioMickWatson
29K Followers 3K Following Bioinformatics | (meta) genomics | Data science. Some politics. Views are all my own and do not represent past, current or future employer.
Galaxy Project @galaxyproject
13K Followers 8K Following Galaxy has left Twitter/X! Find us here: LinkedIn: https://t.co/kAk7vcTDVp Bsky: @galaxyproject.bsky.social Mastodon: @[email protected]
Titus Brown @ctitusbrown
10K Followers 827 Following I am not a deep man, but I have many shallows. I aspire to be a pro-community culture hacker. https://t.co/rC4xLPWd8O…. mastodon: @[email protected]. He/him.
ELIXIR Europe @ELIXIREurope
10K Followers 1K Following Research infrastructure bringing together Europe's #bioinformatics resources. Store, analyse, share, & reuse data
IntAct at EBI @intact_project
2K Followers 151 Following The Molecular Interactions Database at the EMBL-EBI. Open Source Framework for Molecular Interactions. Also follow➡️@complexportal.
SIB @ISBSIB
8K Followers 821 Following The SIB Swiss Institute of Bioinformatics is an internationally recognized non-profit organization, dedicated to biological and biomedical data science.
Karl Mechtler @Karl_Mechtler
3K Followers 215 Following Exploring the unexpected. Posts reflects my personal view.
EMBL-EBI/ES @emblebies
1K Followers 298 Following EMBL-EBI's Web Production Team. We help provide access to the best collection of tools and databases in molecular biology today.
AlfonsoValencia alfon... @Alfons_Valencia
8K Followers 2K Following Bioinformatics, Comp biol, cancer genomes, text mining, strucutral bioinfo. but also: Science publishing, science policy, genome & ethics, science & art
Omics Discovery @OmicsDI
230 Followers 43 Following
Mark McDowall @Mark_McDowall
283 Followers 958 Following Python Software Engineer working to enable knowledge extraction and the efficient use of AI in the life sciences @[email protected]
Rafael C Jimenez @rafajido
428 Followers 91 Following Head of Research Informatics at Alzheimer's Research UK.
EMBL-EBI Training @EBItraining
17K Followers 577 Following Offering #bioinformatics training on-site at @emblebi, online, and at institutes around the world. 🏷️ Tag us in content: #EBItraining 📧 [email protected]
Ruti Percino @rutiper
264 Followers 475 Following Evolutionary biologist and naturalist, 🇲🇽 I love amphibians & reptiles #HERper https://t.co/2c44Eat3eC
Tom Walsh @walshtp
316 Followers 215 Following
Alain Domissy @AlainDomissy
145 Followers 738 Following
pfern @pfern
808 Followers 960 Following Experienced Bioinformatics Trainer #OpenScience #OpenData #OpenAccess #OpenSource #Bioinformatics
Eduard @edduard
605 Followers 2K Following Exploring the intricate world of #proteomics @CRGenomica and @UPFBarcelona.
Chiachun Chiu @ChiachunChiu
205 Followers 844 Following Computational Biologist | Organizer of Taipei Bioinformatics Omnibus | Nextflow Ambassador
gahoo @gahoo_lee
11 Followers 135 Following
STEPHEN NEWHOUSE @s_j_newhouse
1K Followers 5K Following #datascientist #bioinformatics & #healthinformatics yak shaver. opinions are mine. Lucky husband and dad (powered by #AI 🤣) He/Him.
mjgarciag @mjggodoy
659 Followers 1K Following PhD in Computer Sciences. We cannot change the cards we are dealt, just how we play the hand (R. Pausch) https://t.co/sJEb9lsBoE![FREE [Bio in Docker] Symposium, 9-10 November 2015, Wellcome Building, London. #bioindocker15](https://pbs.twimg.com/profile_images/663458187987828736/kisfy_JH.jpg)
[Bio in Docker] @bioindocker
208 Followers 2K Following FREE [Bio in Docker] Symposium, 9-10 November 2015, Wellcome Building, London. #bioindocker15
Sandrine Perrin @SandrinePerrin7
18 Followers 300 Following
@vic_bioinfo@genomic.... @Vic_Bioinfo
653 Followers 505 Following #OpenScience #OpenResearch #Bioinformatics ( #omics, #CloudComputing #DataScience #Software) views my own
Dave Lunt @davelunt
1K Followers 897 Following Research: evolutionary comparative genomics, bioinformatics, phylogenomics, nematodes, reproducible open science. Other place=davelunt(a)genomic,social
James Kitson @Kitson_James
322 Followers 312 Following Evolutionary biologist using Illumina and nanopore barcoding of host/parasite interactions and their place in trophic networks
Kevin Tran @kevintvh
233 Followers 3K Following
Luis Sánchez @biotekuani
55 Followers 240 Following
Russell Hamilton @drr... @drrshamilton
559 Followers 1K Following Computational RNA biology & mC DNA | Director@GSK | Previously @astrazeneca @GeneticsCam, @CTR_Cambridge, @CEGX_news
Peter Fields @peterdfields
839 Followers 721 Following Post-doc in the Ebert lab, University of Basel
Lukas Weber @lmwebr
1K Followers 632 Following Assistant Professor of Biostatistics, Boston University. Statistical genomics, biomedical data science, open science, R programming 🇨🇭🇦🇺
Heather Drugge @Proteomics_Now
727 Followers 89 Following I curate a blog that posts stories on the latest mass spectrometry-based proteomic research
CompOmics @compomics
1K Followers 200 Following The CompOmics group specializes in the management, analysis and integration of high-throughput biological data
PRIDE at EBI @pride_ebi
1K Followers 140 Following The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data at EMBL-EBI @emblebi
@[email protected] @dtabb73
2K Followers 1K Following I am not here. I post my new stuff to Mastodon as @[email protected].
Felipe da Veiga Lepre... @leprevostfv
553 Followers 855 Following Biomedical data scientist with a background in molecular biology and bioinformatics. [email protected]
Yasset Perez-Riverol @ypriverol
2K Followers 328 Following Lead Architect @pride_ebi, @biocontainers and in life science in fields like #Proteomics, #Genomics. Opinions on my own, of course. Proud Cuban.Trends for United States
You might like
