BioContainers @BioContainers
A community-driven project to create and manage bioinformatics software containers BioContainers.pro Cambridge, England Joined August 2015-
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Exciting news! #SAGE is now integrated into quantms.org, thanks to the amazing @OpenMSTeam and @michaellazear. Joining COMET (The STABLE) and MSGF (the Deeper), SAGE brings its speed, efficiency, and youthful vibe to #quantms. Let's celebrate at #HUPO2023! 🎉
✨ In 2022, there is a total of 496 services within #ELIXIR. Including: #LSLogin #ELIXIRAAI @FAIRsharing_org #ELIXIRTeSS @BioContainers #BioTools 👀 Find out more in our 2022 annual report: elixir-europe.org/sites/default/…
#quantms is now a #preprint. quantms: A cloud-based pipeline for #proteomics reanalysis enables the quantification of 17521 proteins in 9,502 human samples. researchsquare.com/article/rs-300… Thanks to @OpenMSTeam @DemichevLab, @nf_core, @BioContainers, #BioConda and @nextflowio team’s. 🧵
Very excited to partner with Genomics England on this one.
Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉 Watch now on YouTube: youtube.com/watch?v=hOuS6m…
Had a lot of fun doing this - a nice beginner friendly tutorial 😊 Take your #Python analysis script and build it into a command-line tool, ready for release via @pypi / #bioconda / @BioContainers 🐍🐳🎉 Watch now on YouTube: youtube.com/watch?v=hOuS6m…
Our paper "Automated Discovery of Container Executables" is published in the Journal of Open Research Software! 👉 doi.org/10.5334/jors.4…. This was fun work with @MarcoDeLa83 and Audrey Stott from @PawseyCentre , @mathgeorgia, and Matthieu Muffato of @sangerinstitute.
We created automated pipelines that would not only discover new @BioContainers to add to our online registry, but also executables of interest inside! Our journey included new software, databases, and automation to help developers maintain their own registries. Each of these...
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.
Time for release 🚀. Let me introduce you to the PRIDE Archive USI Viewer @pride_ebi ebi.ac.uk/pride/archive/…. A Spectrum Viewer for every MS in PRIDE Archive. 🧵
Hi there. Today we have written a full tutorial about how to download data from @pride_ebi (ebi.ac.uk/pride/markdown…). We have now 4 options: https, FTP, Aspera, and the new streaming service. 🧵
Would you be interest in a introduction paper about how to use AI tools like Github Copilot in Bioinformatics software development?
I'm so happy today. An open-source, community project I have been contributing for so long from the begining continues flying high. aws.amazon.com/blogs/hpc/bioc…
Announcement at #NextflowSummit - @BioContainers available in ECR @awscloud #container registry aws.amazon.com/blogs/hpc/bioc…
Really excited to announce this one - we've been working with the @BioContainers group to make all of their images available on ECR Public Gallery. This means that bioinformatics containers will not be subject to throttling on AWS. Nice. aws.amazon.com/blogs/hpc/bioc…
Shoutout to @BioContainers for making computing on the cloud easy 😀 More biologist should be using containerized software, and more trainees should be taught how to use it. (or learn on their own)
If you want to learn about the three leading cloud solutions for proteomics data analysis, make sure you register for this workshop. @galaxyproject #TPP @nextflowio #quantms abrf.org/workshops-webi… #Proteomics #MSProteomics #Cloud
Friendly reminder every tool submitted to Bioconda also gets a Docker container from @BioContainers and a Singularity image from @galaxyproject
Friendly reminder every tool submitted to Bioconda also gets a Docker container from @BioContainers and a Singularity image from @galaxyproject
The @MyABRF Cloud Computing Workshop Registration is Now Open: abrf.memberclicks.net/cloudcomputing… #nextflow #TransProteomicPipeline #usegalaxy
Making @BioContainers compatible with M1 Mac ARM architecture is really important for my work going forwards -- anyone else? github.com/BioContainers/…
If you are interested in collaborating using the workflow, please contact us. !!!!
Jason "boundless deli... @JasonWilliamsNY
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Nextflow @nextflowio
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Andy Jones @andy___jones
1K Followers 730 Following Views my own, and not representative of any employer; Bioinformatics prof; that's three underscores in my handle ;-)
Mick W@tson ↙️ @BioMickWatson
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Galaxy Project @galaxyproject
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Tom Kelly ケリー�... @tomkXY
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MetaMorpheus @metamor... @Smith_Chem_Wisc
2K Followers 567 Following Lloyd Smith Research Group Committed to free, open-source software for proteomics in both Windows and Linux. And you won't need a comp sci degree to use it!!
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Nat Vilor-Tejedor @natvilortejedor
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Sathish Kumar @sathishgenomics
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Mateus Falco @mateuslfalco
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Anway @GawGao36293
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Bernd Herding @bernd_herding
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Michael Corona @MikeZippyCorona
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Vitor Paiva @euvitorpaiva
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Rania 👩🔬🔬... @Rania20228
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sarafdco @sarafdco
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Karel Břinda @KarelBrinda
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Conrad Williams @PopGen_
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Titus Brown @ctitusbrown
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SIB @ISBSIB
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