Bioinformatics_News @BioinformatNews
Ambitious bioinformatics analyst who can't wait to begin his career! Joined November 2014-
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Bioinformatics_News retweeted
🎉Immune aging focus 🎉 Franceschi et al discuss tracking and intervening in inflammaging, through a personalized lens nature.com/articles/s4358… rdcu.be/eARAM
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Bioinformatics_News retweeted
🎉 Big news! 🎉 Our AI platform, AgeXtend, just came out in #NatureAging. 🤖 Thanks @NatureAging, it was a great experience for us. Thanks @lab_sengupta @Parul @tarini_ghosh @IIITDelhi @CompBio_IIITD @DBTIndia @serbonline @AnubhutiIhub @iiitdcai 🔗 nature.com/articles/s4358…
Bioinformatics_News retweeted
One of the reasons why it is so difficult to maintain weight loss is because adipose issue retains an epigenetic memory of obesity after weight loss. nature.com/articles/s4158…
Bioinformatics_News retweeted
Ilya Sutskever gave John Carmack a list of papers to read, so as to improve John's understanding of AI. That is a lot to read. If you want to quickly grasp what those papers are about, in this thread I share maps on over 20 of them 👇
Bioinformatics_News retweeted
Just dropped a 4 hour lecture on "Large Language Models": youtu.be/2yjzZfDQxy8 0:00 Basics of language models 2:30 Word2vec 16:27 Transfer Learning 19:23 BERT 1:00:39 T5 1:31:14 GPT1-3 1:53:05 ChatGPT 2:20:03 LLMs as Deep RL 2:53:00 Policy Gradient 3:32:50 Train your…
Bioinformatics_News retweeted
People always ask how the protein is expressed if I show the RNA data. Here are the 10 resources for protein data 👇 🧵
Bioinformatics_News retweeted
Today marks the 25th anniversary of Neil Risch and Kathleen Merikangas' classic 2-page paper that articulated GWAS as the future of human genetics. A short thread. www-leland.stanford.edu/~huatang/gene2…
Bioinformatics_News retweeted
Today in A.I: Sam Altman, the CEO of OpenAI and founder of ChatGPT is facing a senate hearing over the safety and regulation of A.I Here's the summary:
Bioinformatics_News retweeted
The strong inverse correlation between lifespan and mutation rate: we accrue mutations at a slower pace than many mammals but have roughly the same number of mutations by the end of our respective lifespans nature.com/articles/s4158… @Nature
Bioinformatics_News retweeted
Automate the tuning of hyperparameters with PyTorch Ignite using Bayesian Optimisation in Optuna. Learn more: medium.com/pytorch/using-…
Bioinformatics_News retweeted
List of publicly available bulk and sc COVID-19 RNA-seq datasets, with GEO+SRA links github.com/urmi-21/COVID-…
Bioinformatics_News retweeted
New preprint from my lab! We use CRISPR to test effects of genetic variants inside transcripts, validating a number of GTEx variants: eQTLs and rare variants triggering nonsense-mediated decay. We then test variants in two disease genes where NMD affects the phenotype.
New preprint from my lab! We use CRISPR to test effects of genetic variants inside transcripts, validating a number of GTEx variants: eQTLs and rare variants triggering nonsense-mediated decay. We then test variants in two disease genes where NMD affects the phenotype.
Bioinformatics_News retweeted
Our new preprint asks - "What happens when you give people identical bacterial sequence data and ask them to predict antimicrobial resistance?" Answer: A lot of disagreement biorxiv.org/content/10.110… 1/5
Bioinformatics_News retweeted
MapCaller - An integrated and efficient tool for short-read mapping and variant calling using high-throughput sequenced data biorxiv.org/content/10.110… github.com/hsinnan75/MapC…
Bioinformatics_News retweeted
Contaminant DNA in bacterial sequencing experiments is a major source of false genetic variability #bioRxiv biorxiv.org/content/10.110…
Bioinformatics_News retweeted
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive f1000research.com/articles/8-532… github.com/saketkc/pysradb
Bioinformatics_News retweeted
TPMCalculator: one-step software to quantify mRNA abundance of genomic features academic.oup.com/bioinformatics… github.com/ncbi/TPMCalcul…
Bioinformatics_News retweeted
Another PhD thesis (PDF) — Techniques to improve genome assembly quality buff.ly/2XA5zHY
Bioinformatics_News retweeted
Google is now moving into protein function prediction: a deep learning model that learns the relationship between unaligned amino acid sequences and their functional classification. Claims it outperforms hmmer and BLAST biorxiv.org/content/10.110…
Bioinformatics_News retweeted
Elimination of reference mapping bias reveals robust immune related allele-specific expression in cross-bred sheep biorxiv.org/content/10.110…
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Nature Aging @NatureAging
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Stephen Turner 🦋 @... @strnr
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