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Last paper from the lab, revealing how the "same" neurons transcriptionally and functionally differ depending on their position. "Translational profiling of mouse dopaminoceptive neurons reveals a role of PGE2 in dorsal striatum" biorxiv.org/content/10.110…
In this new paper using imaging and modelling, we proposed a multi-step mechanism for mitophagy tandfonline.com/doi/full/10.10… #autophagy #systbiol
Our new paper modelling the complex regulation of calcium signalling in synaptic plasticity is out journals.plos.org/ploscompbiol/a…
Our paper with the @SanjaySinhaUK lab made the cover of @Dev_journal dev.biologists.org/content/146/24… With a nice highlight too dev.biologists.org/content/146/24… Both bench and keyboard biology recognised :-)
Our first scRNAseq paper. Decrypting the regulation of epicardial heterogeneity. dev.biologists.org/content/early/… #stemcells #regenerativemedicine #cardiovascular
2nd version of our paper on #modelling #autophagy and #mitophagy is online biorxiv.org/content/10.110…
New paper: Epicardial cells derived from human embryonic stem cells augment cardiomyocyte-driven heart regeneration. nature.com/articles/s4158… #stemcells #regenerativemedicine #Cardiology
New paper on SBOL visual: Communicating Structure and Function in Synthetic Biology Diagrams pubs.acs.org/doi/10.1021/ac… #syntheticBiology #standards
New annual batch of standards specifications published in JIB, incl. SBML doi.org/10.1515/jib-20… and SBOLv doi.org/10.1515/jib-20…
New paper showing how to use metabolomics to improve objective function for constraint-based modeling. Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging frontiersin.org/articles/10.33…
A consensus whole genome metabolic reconstruction is now available for Caenorhabditis elegans, developed by the #WormJam effort frontiersin.org/articles/10.33… #recon #systbiol #FBA
"Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite" Now in BioRxiv biorxiv.org/content/early/… Super useful tool to improve your GSMM #systbiol #fba #sbml
Graphical representations of molecular mechanisms underpinning diseases can integrate large amounts of disparate knowledge and provide new systems-wide insights nature.com/articles/s4154…
Our JIB Special Issue on #SystemsBiology is finally online, check it out 👉 bit.ly/sysbio18 #bioinformatics #sysbio #openaccess
Bioinformatician post-doc position to work on single cell omics for regenerative cardiovascular medicine. Collaboration between @BabrahamInst and Sinha Lab at the @SCICambridge jobs.cam.ac.uk/job/17116/
The first two articles of our upcoming Special Issue on "Standards in Systems Biology" are online! 👏 @sbmlnews @mhucka bit.ly/JIB-AoP #systemsbiology #sysbio #compbiol #modeling #sbml #openaccess
New standard online 👉"Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)": bit.ly/SED_ML @dagmarwaltemath @bergmannf @konigmatt @imbalrog @andreshouse @LeNovere @Brett_Olivier #openaccess
The new week starts with another article of our upcoming Issue on Standards in Systems Biology! 👉 bit.ly/JIB-SBOL @SBOLstandard #SBOL #synbio #openaccess
Piero Dalle Pezze's repetitive analysis tool SBPIPE can now be used through R, via the sbpiper package cran.r-project.org/web/packages/s… #simulation #estimation #systbiol
New post-doc position in the lab, to work on pathways mediating intra-neuronal transport of toxic aggregates in various neurodegenerative diseases. Apply at babraham.ac.uk/vacancies-trai…
Dagmar Waltemath @dag... @dagmarwaltemath
724 Followers 794 Following biomedical research data management @waltelab
jrbanga @julio_r_banga
645 Followers 1K Following Researcher at CSIC (Spanish National Research Council). Computational systems biology. Find me at @julio-r-banga.bsky.social
PLOS Comp Biol @PLOSCompBiol
21K Followers 368 Following An open-access, peer-reviewed journal. Tweets from: PLOS CB Team. Header Image Credit: Benjamin Czaja, The University of Amsterdam.
Tomas Helikar @tomashelikar
650 Followers 1K Following Born & raised Czech, first-gen American. Building immune digital twins to better understand and optimize our immune system.
Nelson Dusetti 🇫�... @NelsonDusetti
2K Followers 5K Following Translational research in pancreatic cancer - @crcm_marseille - INSERM U1068
Fabián Huerta @FabinHuerta8
95 Followers 2K Following
Hiscock Lab @hiscock_lab
555 Followers 687 Following Heart of a developmental biologist, head of a mathematician/physicist. Tweets from Tom and lab members.
gcb2025 @gcb2024
328 Followers 447 Following German Conference on Bioinformatics is an annual international conference devoted to all areas of #bioinformatics | 22 - 24 Sep. 2025 | Uni Düsseldorf #gcb2025
ODias_UMinho @ODias_UMinho
26 Followers 74 Following
Aujoulat Chloé @ChloeAujoulat
5 Followers 289 Following
GCB2021 @gcb2021
153 Followers 385 Following German Conference on Bioinformatics is an annual international conference devoted to all areas of #bioinformatics ➡️ Sep 6-8, 2021 - online event
Bilal Shaikh @bshaikh42
61 Followers 459 Following
Alejandro Castellanos @alejandrocs_98
130 Followers 2K Following Microbiologist | Physicist | Computacional Biologist @uniandes | Colombian
Christopher Vaglio @crvaglio
70 Followers 485 Following Engineer / Project manager / Professor with interest in Bioinformatics, Systems and Molecular biology.
Modeling And Beyond @BeyondModeling
34 Followers 49 Following Run by @b10_m0del1ng and @amogh_jalihal https://t.co/47zH80jAMw
G @gyldzgy
15 Followers 188 Following
Samuel @SamuelBharti
43 Followers 241 Following Researcing NF1 and Breast Cancer associations | P.hD. student at @uabbme | President @club_uab
misbah @misbahch6
59 Followers 179 Following interested in deep learning, Integrating data and signaling networks, Model Checking, Logic Programming, modeling regulatory networks
Vincent Noël (@vince... @vincentnoel72
259 Followers 830 Following Research scientist in @SysBioCurie team at @institut_curie. Modeling and simulating biological systems with multiscale frameworks. #MaBoSS,#PhysiBoSS developer
MaxO @peeshvaa
200 Followers 539 Following PhD in Mathematical Modelling. Currently an Applied AI Scientist.
Louis Fippo Fitime @LFippoFitime
79 Followers 264 Following Ph.D. Computer Science (Formal Methods, Artificial Intelligence, Data Science), Teacher-researcher @ ENSPY of UY I, Team lead @ Connect Technology.
Hamza Karakurt @hukarakurt
151 Followers 450 Following PhD Student in Bioinformatics and Systems Biology Transcriptome Data Analysis, Network Modelling Clustering, Machine Learning and Deep Learning Algorithms
Rasool Saghaleyni @RaSaghaleyn
180 Followers 592 Following Computational Biology Scientist | National Bioinformatics Infrastructure Sweden (NBIS)
Hiroaki Imoto @hiroaki_imoto
117 Followers 235 Following Postdoctoral Researcher @sysbioire @ucddublin 🇮🇪
Kirk @kirkmack
75 Followers 869 Following
Gabriel (Gav) Sturm @sturm_gav
480 Followers 1K Following CompBio @CZbiohub SF mitochondrial dynamics, microscopy, and cellular lifespan.
Brad English @brad_w_e
1K Followers 982 Following @harvardmed PhD student in the @geochurch lab | @foresightinst Fellow | @lbf_boston Chapter Co-Director | 🧘🚀👾 Tweets = mine alone
Lillo Carlino @LilloCarlin0
176 Followers 3K Following 100 anni fa ero un barbiere | ex Visiting @lo_zanzi, BCH, Boston | ex Intern @ CNTE, Niguarda, Milano | now PhD student @myUniSR mentored by @daweonline
Goh Lab @GohLab
326 Followers 1K Following Assoc. #Professor #Plant Functional #Genomics #SystemsBiology @INBIOSIS @UKM_my | PhD BSc @SheffieldAPS | #Omics #SynBio #Bioinfo #Biotech #IT #AI #ML #4IR #SDG
Jonathan Rey @JonTrinE
680 Followers 4K Following PhD candidate in the Golowasch Lab at NJIT he/him 🇵🇭🇺🇸
Zeynep Karagöz @karagoezeynep
197 Followers 324 Following PhD | avid runner when not running simulations @MERLN_UM, @LMU_Muenchen & @UniBogazici_en graduate
Anna Ritz @anna_m_ritz
720 Followers 1K Following Computer scientist turned computational biologist at Reed College in Portland, OR. She/her. Tweets are my own. Mastodon: @[email protected]
Adrien 🔃 Fauré @retrocircuit
58 Followers 175 Following Des cercles vicieux et vertueux, des boules de neige et des serpents qui se mordent la queue. Biologiste discret @UmrAmap
Nima Dehghani @neurovium
3K Followers 5K Following #{I COMPUTE, THEREFORE I AM}# Biological Computation,Neurophyics & CompNeuro, Complex Systems. neuro https://t.co/L44S1cBvCB
Pranavathiyani G @pranavathiyani
744 Followers 6K Following Assistant Professor (Research) @SastraUniv | Multidisciplinary enthusiast 💬 | #Bioinformatics #SystemsBiology #DataScience #AMR #Coding #AI
Reproducible Biomodel... @reprobiomodels
476 Followers 356 Following Making biomedical models understandable, reproducible, reusable, and composable
Anbumathi Palanisamy @anbupals
157 Followers 760 Following
Edmund Crampin @EdmundCrampin
538 Followers 1K Following Professor of Systems Biology, increasingly interested in Synthetic Biology. Views my own.
Yiğit Koray Babal @BabalKoray
100 Followers 241 Following Postdoctoral Researcher @karolinskainst. prev @MPIforBI @GtuEduTr @AxanLab #neurobiology #bionformatics
Meghna Verma, PhD @meghna_verma28
993 Followers 4K Following Systems Modeling Scientist @AstraZeneca | PhD @virginia_tech @VT_TBMH | #compmodels #agentbasedmodels | M.S #BME #Bioinformatics @DrexelUniv | Views are my own
Pencho Yordanov @PenchoYordanov
44 Followers 342 Following Computational systems biologist (previously @harvardmed, @CSB_ETHZ)
Sci-isms @MercuryTimes
113 Followers 2K Following Sci-isms Scientific discussions in an informed environment
Letizia Vestito @letizia_ve
85 Followers 474 Following Postdoctoral research fellow in Computational Genomics interested in Genomics | Rare Diseases | BioTech | Translational Medicine 🧬
🇺🇦🇺🇦🇺�... @oveoyas
416 Followers 1K Following
Rémy Nicolle @RemyNicolle
293 Followers 322 Following INSERM Researcher with focus on pancreatic cancer genomics - ATIP-AVENIR laureate Lab: https://t.co/51nAdcu0bm
Nicolò Caporale @NicoloCaporale
1K Followers 5K Following Medical Doctor. Researcher. Between environment & genomes for human health & development #Organoids #SingleCells #EndocrineDisruptors #MultiOmics
Jonathan Sobel @JonathanSobel1
1K Followers 3K Following Staff sci. @unige Global Health Institute in the IDMM group. Interests: #MachineLearning #Healthcare #Epidemiology #Chronobiology #Metabolism #Wikipedia
Astrid Junker @AstridJunker
682 Followers 423 Following Plant phenotyping lead at Syngenta. Scientist, mom and passionate about nature, being outside with my family, action! Lets move forward!
Theory of Living Matt... @TLM_Cambridge
4K Followers 1K Following TLM is an initiative to build a network for researchers interested in theory and modelling of biological phenomena. Now also at: https://t.co/kEf8LxHTFT
Gatersleben Research ... @grcib2025
220 Followers 367 Following Gatersleben Research Conference on Applied #Bioinformatics for #Crops, @IPKGatersleben, 18 - 20 March, 2019
Claudine Chaouiya @ClaudineChaoui2
17 Followers 21 Following
Surya Kiran @surya_kiran7
7 Followers 383 Following
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