ENCODE DCC @EncodeDCC
The Data Coordinating Center for the Encyclopedia of DNA Elements. Free, accessible data at your fingertips. encodeproject.org Stanford, CA Joined December 2011-
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ENCODE DCC retweeted
Excited to announce that "The EN-TEx resource of personal epigenomes & variant impact models" just came out: Cell.com/cell/fulltext/…. The paper represents the culmination of many years of work by >100 authors & has lots of useful information about allele-specific activity.
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ENCODE DCC retweeted
Does anybody know if chromatin segmentation (either ChromHMM or Segway) for NIH3T3 cells is available? I admit I’m not able to find it (mm10, possibly)
ENCODE DCC retweeted
Read about the @4DNucleome data portal, now out in @NatureComms #FAIRdata nature.com/articles/s4146…
ENCODE DCC retweeted
Are you running the data or are you run over by petabytes of data? These ten simple rules will help you to tame large-scale datasets. Read more: ow.ly/BnnS50HUP3U @Chai_Arkarachai #bioinformatics #genomics #BigData
ENCODE DCC retweeted
Supporting Talented Early Career Researchers in Genomics RFA-HG-22-001 grants.nih.gov/grants/guide/r…
ENCODE DCC retweeted
Looking forward to seeing everyone (virtually) and hearing about all the exciting new research at the @4DNucleome annual meeting today! DCIC demo session tomorrow (Thursday) at 11:53am PST!
ENCODE DCC retweeted
**RFA Announcement** Supporting Talented Early Career Researchers in Genomics RFA-HG-22-001 For more information: ow.ly/7kTc50H6bZq
ENCODE DCC retweeted
Model organism databases are in jeopardy | Development | The Company of Biologists journals.biologists.com/dev/article/14…
This is super important
ENCODE DCC retweeted
ENCODE DCC retweeted
Interested in genome-wide profiles of chromatin accessibility? Perform quality control and signal processing to produce alignments and measures of enrichment with the ENCODE ATAC-seq Pipeline, released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC
ENCODE DCC retweeted
Interested in analyzing chromatin modifications and binding patterns of transcription factors and other proteins? Check out the ENCODE ChIP-Seq Pipeline 2 released on the Seven Bridges Cancer Genomics Cloud platform. @ENCODE_NIH @EncodeDCC
ENCODE DCC retweeted
Today we reached 130,000 #cellline entries in the #Cellosaurus. We tried to find a good image representing that number and found this picture of 130,000 spectators attending a mega concert of Madonna on August 29, 1987 at Parc de Sceaux near Paris
ENCODE DCC retweeted
I don’t think the long read community realizes how long PacBio cDNA reads can be with the right protocol & much higher quality thanks to CCS. The final @ENCODE_NIH long read dataset for human and mouse will be a treasure trove for the community!
ENCODE DCC retweeted
GENCODE are excited to support international community efforts to produce reference annotation for human ORFs discovered by Ribo-seq. Preprint: bit.ly/2Ty4Mdo Website text: bit.ly/3iCFiX0
ENCODE DCC retweeted
ENCODE DCC retweeted
This is an infrastructure project. Join us gopetition.com/petitions/a-un… @anshulkundaje @ontowonka 16/16
ENCODE DCC retweeted
... full time data scientists and professionals, thousands - maybe millions of lines of code, and training. In particular, scientists will have to be re-trained to be more collaborative, more open, and more rigorous in detailing exactly how to reproduce their work. 15/x
ENCODE DCC retweeted
Preliminary findings and interesting data could be shared instantaneously with collaborators across the globe. This will never happen without top down organization. It would require equipment on the ground, computational clouds, ... 14/x
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