Raphael Eisenhofer @R_Eisenhofer
Microbiomes/metagenomics/bioinformatics with a focus on marsupials. Postdoc @evohologen @EHologenome @Globe_UCPH Mastadon: @[email protected] researchers.adelaide.edu.au/profile/raphae… Copenhagen, Denmark Joined April 2015-
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Q: What could GO WRONG with a major cancer genomics study in which tumours are sequenced to only 15x depth? A: An awful LOT! 😟 Our detailed reanalysis now out in @RSocPublishing: tinyurl.com/RSOSrebuttal 🧵👇 (1/18)
This Cell paper on the 'cancer microbiome' repeats all the mistakes that gave us the so-called 'fetal microbiome'. Inadequate contamination controls, no culture data, no microscopy. And is it really ecologically plaucible that 165 genera colonize tumors? cell.com/cell/fulltext/…
Enjoyed this wide ranging conversation on preprints, peer review, social media, and academic culture on @stemcellpodcast labcoatsandlifepodcast.com/ep-5-the-role-…
Save the date! #Tasting #Holobionts is an event where researchers and the public will delve into how #microbes shape an essential part of our lives - our #food - from #fish to #ferments. April 24 @evohologen will host this @forskdk event 18.30-21! More👇 forsk.dk/arrangorprofil…
I've been updating my list of @PacBio HiFi #metagenomics publications, and it looks like 2024 is off to a great start! I count 9 published studies so far (pre-prints not included), but let me know if I missed any. Here is a thread with the papers (alphabetical): 🧵 1/10
Congrats @R_Eisenhofer, @OstaizkaAizpu and colleagues for the new publication on the comparative analysis of sequencing methods for genome-resolved metagenomics! journals.asm.org/eprint/K554J8Y… @evohologen @Globe_UCPH
The prevalence of controls in #phyllosphere #microbiome research: a methodological review #Viewpoint by @bradywelsh_ and @R_Eisenhofer 👇 📖 ow.ly/UXHI50QJoE8
The prevalence of controls in phyllosphere microbiome research 📖 ow.ly/GFtJ50QA7sv Viewpoint by Welsh & Eisenhofer @R_Eisenhofer @bradywelsh_ Mastodon
Was a pleasure working with you on this one Brady!
Was a pleasure working with you on this one Brady!
Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. We applied it to 250,000 metagenomes- in environmental samples 75% lack a genome/MAG (abundance-weighted). A 🧵biorxiv.org/content/10.110…
CoverM 0.7.0, metagenome coverage calculator, is out. Citation, strobealign for faster mapping, skani for faster genome derep, bwa-mem2 and checkm2 support. github.com/wwood/CoverM/r… Too many ppl to thank in short tweet..
This weeks EHI project: CONVERGENCE Hologenomics. We investigate marsupial and placental species with similar ecological characteristics, to understand the impact of animal-microbiota interactions in the evolution of ecological features of mammals. earthhologenome.org/convergence_ho…
Contamination in Microbiology by Mechas Anyone who has worked in a microbiology lab can empathize with the anguish of having a contaminant ruin your experiment. In many cases, such as in clinical laboratories or in the food... Read more > tinyurl.com/zsmmpvpr @ContamClub
Nuttakorn Taewcharoen, Emma Kerr, Marissa Hutchings & Elisabeth Williamson presenting their work at the @RoyalSocSA meeting last week. Great to see what amazing research the RSSA was able to fund through our Small Research Grants scheme rssa.org.au/awards-and-gra…
Want to know how much evidence the research community has produced since we proposed the microbe-driven adaptation hypothesis back in 2016? The answer in our new quantitative systematic review, now submitted and posted as a preprint! researchsquare.com/article/rs-357…
📣Great conference news!! The FREE registration is now OPEN for the #Applied #Hologenomics #Conference 2024 in Copenhagen June 30 - July 2! Go to the conference webpage and click REGISTRATION👇 appliedhologenomicsconference.eu #AHC2024 @GrundforskFond @evohologen @novonordiskfond
Laura Weyrich @lsweyrich
2K Followers 1K Following Assoc Prof and paleomicrobiologist at Penn State @PSU_Anthro and @huckinstitutes using #ancientDNA to explore past/ future human health a #microbiome at a time!
Bastien Llamas @DNATimeTravel
2K Followers 460 Following Paleogeneticist, soccer player, sweet tooth, world citizen, globe trotter, fascinated by the natural world. My tolerance of haters is limited. He/him
Center for Evolutiona.. @evohologen
1K Followers 389 Following CEH is retelling the story of life by applying a new #hologenomics approach to host-#microbiome interactions. Led by Prof Tom Gilbert, funded by @GrundforskFond
Dr Kieren Mitchell @KierenJMitchell
458 Followers 372 Following Researcher at Manaaki Whenua Landcare Research (@mwlr_nz) | Long-term Ecology Research Lab (@LCR_LTEL) | Tweets palaeoecology, evolution, and biodiversity
Kristofer Helgen @khelgen
11K Followers 5K Following Zoologist, Professor, Explorer, Chief Scientist Australian Museum @austmusresearch @austmus @eurekaprizes @FrogIDAus @AMDigiVol @lirrf Personal account.
Xavier Roca-Rada, PhD @XavierRocaRada
680 Followers 510 Following Paleogenomicist - Postdoctoral Fellow at @ACAD_Research_ (@UniOfAdelaide and @UnivdeCoimbra)
Michael S. Y. Lee (bi.. @michael_s_y_lee
1K Followers 796 Following Scientist, Dad, Spouse, Bayesian - not necessarily in that order. Views own. #EvolutionaryBiology #Phylogenetics Day job: Professor @samuseum & @flinders
Phill Cassey 😷🇳.. @InvasionEcology
3K Followers 2K Following Environmental Biosecurity | ARC Industry Laureate Fellow @UofA_SET | Born: 330.2 CO2 ppm | Kindness matters more than awards #opinionsmyown #iwillseemyselfout
Jenna @jcroweriddell
1K Followers 1K Following DECRA fellow researching brain and sensory evolution in reptiles 🐍🦎🧠 @SABE_LaTrobe
Kathy Belov @KathyBelov
6K Followers 5K Following Professor of Comparative Genomics studying Australian animals, inc Tasmanian devil & koala. Currently PVC Global & Research Engagement @sydney_uni.
Juan A. Rodríguez @jrotwitguez
551 Followers 1K Following Postdoc @evohologen A cocktail of hologenomics, 3D genomes, GWAS and evolution. Retweets with pH under 7.
Jimmy Breen @wessidepraxis
3K Followers 3K Following President of @ABACBS 丨 Chief Data Scientist, Indigenous Genomics @ Telethon Kids Institute丨jimmymbreen ⟦at⟧ gmail
Erinn Fagan-Jeffries @ErinnFJ
1K Followers 1K Following Postdoc researcher studying wasps! I love and tweet #entomology, #taxonomy & #scicomm. 🔬 🧬 🐛🐜🐝 She/her.
Dr Qamariya Nasrullah @QamNas
882 Followers 1K Following Postdoctoral Research Associate @KingsCollegeLon @Kingsdentistry | #EvoDevo #Teeth #Vertebrates | she/they
Dr Emily Scicluna �.. @DrDunnart
1K Followers 893 Following Research Associate @UniMelb / PhD @latrobe. Fat-tailed dunnarts. Dasyurid conservation, captive breeding, reintroduction, behaviour, skull morphology.
Australian Centre for.. @ACAD_Research_
1K Followers 348 Following Australian Centre for Ancient DNA | Kaurna Yerta | Student run account
Tahlia Perry @tahliajperry
1K Followers 1K Following PostDoc @UniofAdelaide & @cabahCoE • Creator of @echidna_csi • Wildlife research & conservation using #genomics & #citizenscience
Robbi Davidson, PhD @ro99i___
330 Followers 703 Following Scientist in Ancient DNA and genomics @ACAD_Research_ | Host of the Never Stop Asking Questions podcast 🎙️ 👇
Gunnar U. Neumann @gunnar_neumann
736 Followers 971 Following Phd student in archaeogentics at @MPI_EVA_Leipzig interested in ancient diseases 💀🦠🧬🏳️🌈 (he/him)
Dr. Julie Old @dasyuridae
269 Followers 318 Following Comparative immunologist. Wildlife conservationist. My views are my own.
palaeocdf @palaeocdf
403 Followers 992 Following Palaeoanthropology research group at CIRB/Collège de France. Palaeoproteomics, ZooMS, Palaeolithic Archaeology, Human Evolution.
Nicholas Agar @AgarNicholas
492 Followers 369 Following I'm a philosopher at the University of Waikato
Astra Trippett @tripp_ast
45 Followers 5K Following
Lucia Snyderman (she/.. @aukwardlucia
597 Followers 2K Following Biology Graduate @Middlebury | PhD student @OfficialZSL & @UniRdg_GES | Researching extirpated birds 🦢, fish 🐟 & ecosystems | @PalaeoPoems volunteer
angad singh johar @angadjjjjj
8 Followers 22 Following
Jeanette Rauschenberg @JeanetteRa59139
52 Followers 5K Following
Melva Hedgepeth @HedgepethM69105
37 Followers 5K Following
Elizabeth H J Neilson @ehneilson
739 Followers 868 Following Plant Ecophysiology Group Leader, Copenhagen Uni. Role & evolution of plant metabolic pathways. Aussie expat, mum of three. Dismantle the tower ✊🏾🌈
Claire Williams @clairewill22
503 Followers 1K Following interested in host-microbiome adaptation to environmental change 👩🏼🔬 l BS Biochemistry @northeastern, MSc @tcddublin , PhD candidate @unevadareno | she/her
Bianca De Sanctis @biancadesanctis
154 Followers 395 Following Postdoc at @CamZoology and @GeneticsCam. Pop gen and ancient eDNA. Same name at 🟦
Markella Moraitou @markella_morait
76 Followers 263 Following PhD student @EdinburghUni (via 🇬🇷🇸🇪🇵🇹🇹🇹🇪🇸) studying oral microbiome evolution using museum specimens 💀 @[email protected]
Morten Hoppe @HoppeMorten
13 Followers 163 Following Bioinformatician in Clinical Microbiology 🧫🔬🧬🖥 Previously worked with cable bacteria @CEMAarhus 🇩🇪 🇩🇰
Vanessa Brown @TinyTwinkle_
12 Followers 150 Following In my Pass life I was a 📖,I bang my head against the wall to bring words out for women🚺 + cannabis brands 🍁 Passionate crypto investor,Crypto Coin Farmer.
Homère J. Alves Mont.. @mobetterhome
232 Followers 656 Following Postdoc at @Globe_UCPH | @evohologen
Ashley M. Dungan, PhD.. @Symb10sis
782 Followers 1K Following POC and LGBTQI+ ally | dog mom | Researcher @unimelb | microbial symbioses and assisted evolution | CrossFit fanatic |
Olivera Topalovic @o_topalovic
724 Followers 445 Following Nematode interactions with plant and soil microbiome, plant health & biocontrol Postdoc at University of Copenhagen @novonordiskfond fellow
Fernanda Cardoso @DrFeCardoso
440 Followers 520 Following Senior Research Fellow @IMBatUQ | PI @Cardosolab | Neuropharmacology | Pain | Neurodegeneration | Ion Channels | Venom research | Mentor | Mother and Wife
NRMjobs @NRMjobs
2K Followers 2K Following Follow here for Australian job vacancies in environment, water & NRM - or subscribe to our weekly email bulletin for job updates - https://t.co/87leevoO0U
Josephine @arlington_josep
140 Followers 3K Following
Kathy @foster19kathy
128 Followers 3K Following
Rufus @toodineigh92287
441 Followers 5K Following See the world on the road, and get to know yourself on the way!
Makenna Lindsey @MakennaLin94548
97 Followers 3K Following
Edith @edith_lawson_
2K Followers 4K Following
Ivy @jochum17ivy
114 Followers 3K Following
Sophia @Sophia689666514
1 Followers 32 Following Failure is just the root of success, but don't fail it twice #golf #travel #fitness #yoga #Football #Snooker #IceHockey #Hiking #gym
Crystal Moore @CMoore95146
126 Followers 3K Following
Ardoun Shop @ArdounShop
3K Followers 5K Following #ArdounShop Sell most products for print on demand uploads all designs in the best possible quality so that U get the best service for the products after print
Hina Sulehri @HinaSulehri1
267 Followers 2K Following Microbiologist, Immunologist, Zoologist. Interested in microbiome, gut brain axis, probiotics. Research student at JNU #jejunationaluniversity
Applied Hologenomics .. @AppliedHoloConf
246 Followers 41 Following June 30 - July 2 2024 CPH, Denmark - organised and hosted by @evohologen, supported by @novonordiskfond. FREE Registration opens in November. Tweets #AHC2024
PacBio @PacBio
46K Followers 3K Following Our mission is to enable the promise of #genomics to better human health by creating the world’s most advanced #sequencing technologies. #PacBio
SandraBreumAndersen @SandraBAndersen
690 Followers 658 Following Evolutionary biologist interested in the social lives of bacteria. Associate Professor at the Center for Evolutionary Hologenomics, University of Copenhagen
UCPH Social and Symbi.. @SocSymEvo
1K Followers 3K Following Welcome to the UCPH Social and Symbiotic Evolution Group Twitter! Facebook page: https://t.co/rX36VuDemc
Moin Sheam @Moin_Sheam
40 Followers 159 Following PhD student at @unccharlotte / Marine microbial ecologist /M.Sc. @imbrsea, @ugent, @sorbonne_university/ Nature lover & traveler
Emma Vitale @emma_fatale
38 Followers 169 Following Dog sledding 🐕🛷 PhD fellow at the University of Copenhagen and the University of Greenland
Yosuke Nishimura @ysknishimura
546 Followers 487 Following メタゲノムデータをフル活用した微生物の研究をしています。海洋研究開発機構 特任研究員Project Researcher in JAMSTEC. Metagenomics and bioinformatics.
Ryan Pace @Dr_RyanPace
506 Followers 1K Following Assistant Professor at University of South Florida. Microbiome, development, lactation, maternal/infant health. Find me at @ https://t.co/2Lv5ZkoEZH
Bonnie @sandiford87bonn
196 Followers 3K Following
Jonathan Eisen @phylogenomics
66K Followers 10K Following Bio. Prof. @UCDavis "All microb(iom)es, all the time" Lab: https://t.co/XVzbMvveOE Ted talk: https://t.co/74jjCOFY90 Pics: https://t.co/waXqjRp6Pc
Zamin Iqbal @ZaminIqbal
10K Followers 7K Following Professor of Algorithmic and Microbial Genomics at the University of Bath; Group Leader EMBL-EBI. Pathogens, genomics, genome graphs, antibiotic resistance
Conan Zhao @ConanYZhao
385 Followers 1K Following MS2 @MayoClinicSOM (☢️🦀) PhD @QBioS_GT | @Gatechmicrobes | @sambrownlab (microbiomics ⋂ CF) JM @reininsarcoma Scholar 🇨🇦 posts are my own
George Bouras @GB13Faithless
687 Followers 907 Following Bioinformatics @UniofAdelaide - phages, microbes and more
Professor Don Pate @DrDonPate
1K Followers 3K Following Professor of Archaeological Science Bioarchaeology, Biogeochemistry, Isotopes, Environmental Sciences, Health @Flinders (SDSU-Brown-Harvard) 🇺🇸🇦🇺🏳️🌈
rocksolidfossils @rocksolidfossil
1K Followers 4K Following Please visit us at https://t.co/cUHtPcFgY5 for fossils, gems (both rough & faceted), meteorites, and more :) https://t.co/J7rnClmvme
Jeremy Austin 🧬�.. @dnatimelord
2K Followers 29 Following Alleged parody account of a wannabe research scientist using ancient DNA to travel through time...
Laura Weyrich @lsweyrich
2K Followers 1K Following Assoc Prof and paleomicrobiologist at Penn State @PSU_Anthro and @huckinstitutes using #ancientDNA to explore past/ future human health a #microbiome at a time!
Bastien Llamas @DNATimeTravel
2K Followers 460 Following Paleogeneticist, soccer player, sweet tooth, world citizen, globe trotter, fascinated by the natural world. My tolerance of haters is limited. He/him
Center for Evolutiona.. @evohologen
1K Followers 389 Following CEH is retelling the story of life by applying a new #hologenomics approach to host-#microbiome interactions. Led by Prof Tom Gilbert, funded by @GrundforskFond
Jack Ashby @JackDAshby
15K Followers 1K Following Award-winning author #PlatypusMatters. Assistant Director of @ZoologyMuseum at @Cambridge_Uni. Australian mammal nerd. @Nat_SCA Trustee. Own views
Dr Kieren Mitchell @KierenJMitchell
458 Followers 372 Following Researcher at Manaaki Whenua Landcare Research (@mwlr_nz) | Long-term Ecology Research Lab (@LCR_LTEL) | Tweets palaeoecology, evolution, and biodiversity
Kristofer Helgen @khelgen
11K Followers 5K Following Zoologist, Professor, Explorer, Chief Scientist Australian Museum @austmusresearch @austmus @eurekaprizes @FrogIDAus @AMDigiVol @lirrf Personal account.
Xavier Roca-Rada, PhD @XavierRocaRada
680 Followers 510 Following Paleogenomicist - Postdoctoral Fellow at @ACAD_Research_ (@UniOfAdelaide and @UnivdeCoimbra)
Hernán Morales @HernMoral
1K Followers 1K Following Globe Institute @uni_copenhagen. Evolutionary and #conservation #genomics and #museomics Also #speciation and #mitonuclear coevolution 🇲🇽in🇩🇰
Michael S. Y. Lee (bi.. @michael_s_y_lee
1K Followers 796 Following Scientist, Dad, Spouse, Bayesian - not necessarily in that order. Views own. #EvolutionaryBiology #Phylogenetics Day job: Professor @samuseum & @flinders
Phill Cassey 😷🇳.. @InvasionEcology
3K Followers 2K Following Environmental Biosecurity | ARC Industry Laureate Fellow @UofA_SET | Born: 330.2 CO2 ppm | Kindness matters more than awards #opinionsmyown #iwillseemyselfout
Jenna @jcroweriddell
1K Followers 1K Following DECRA fellow researching brain and sensory evolution in reptiles 🐍🦎🧠 @SABE_LaTrobe
Dr Marissa Parrott @drmparrott
4K Followers 958 Following Senior Conservation Biologist, Wildlife Conservation & Science, @ZoosVictoria. #FightingExtinction. #TeamHB4 @HomewardBound16. Tweeting in a personal capacity.
Kathy Belov @KathyBelov
6K Followers 5K Following Professor of Comparative Genomics studying Australian animals, inc Tasmanian devil & koala. Currently PVC Global & Research Engagement @sydney_uni.
Hugh Possingham @HugePossum
21K Followers 16K Following University of Queensland (40%), Accounting for Nature (10%), Biodiversity Council (10%), loves birds, trying to be useful, RT not endorsement
Vera Weisbecker (she/.. @WeisbeckerLab
1K Followers 558 Following Morphological Evo-Devo Lab, Marsupial Lovers, 3D Nerds, Coffee Junkies. All opinions our own
Juan A. Rodríguez @jrotwitguez
551 Followers 1K Following Postdoc @evohologen A cocktail of hologenomics, 3D genomes, GWAS and evolution. Retweets with pH under 7.
Jimmy Breen @wessidepraxis
3K Followers 3K Following President of @ABACBS 丨 Chief Data Scientist, Indigenous Genomics @ Telethon Kids Institute丨jimmymbreen ⟦at⟧ gmail
Erinn Fagan-Jeffries @ErinnFJ
1K Followers 1K Following Postdoc researcher studying wasps! I love and tweet #entomology, #taxonomy & #scicomm. 🔬 🧬 🐛🐜🐝 She/her.
ARC Tracker @ARC_Tracker
16K Followers 1 Following Part human, part bot, 100% UNOFFICIAL. I track Australian Research Council grant outcomes. Bot checks for announcements of outcomes each minute. FAQ in profile.
Kristen Scicluna @kristenscicluna
573 Followers 547 Following Biomedical researcher ➡️ Postdoctoral Research Fellow @TheAusInstitute. Research integrity | higher education | university reform📍Ngunnawal Ngambri Country
Nicholas Agar @AgarNicholas
492 Followers 369 Following I'm a philosopher at the University of Waikato
Daryl… @darylbmather
474 Followers 889 Following Often the hands will solve a mystery that the intellect has struggled with in vain. ~ Yung
Elizabeth H J Neilson @ehneilson
739 Followers 868 Following Plant Ecophysiology Group Leader, Copenhagen Uni. Role & evolution of plant metabolic pathways. Aussie expat, mum of three. Dismantle the tower ✊🏾🌈
Homère J. Alves Mont.. @mobetterhome
232 Followers 656 Following Postdoc at @Globe_UCPH | @evohologen
Ashley M. Dungan, PhD.. @Symb10sis
782 Followers 1K Following POC and LGBTQI+ ally | dog mom | Researcher @unimelb | microbial symbioses and assisted evolution | CrossFit fanatic |
NRMjobs @NRMjobs
2K Followers 2K Following Follow here for Australian job vacancies in environment, water & NRM - or subscribe to our weekly email bulletin for job updates - https://t.co/87leevoO0U
Novo Nordisk Foundati.. @novonordiskfond
25K Followers 185 Following Our vision is to improve people’s health and the sustainability of society and the planet
eLife - the journal @eLife
163K Followers 744 Following The funder-researcher collaboration and open-access journal for research in the life and biomedical sciences | @eLifeCommunity
Richard Sever @cshperspectives
21K Followers 1K Following Assistant Director of Cold Spring Harbor Laboratory Press, bioRxiv & medRxiv Co-Founder
GBIF @ecoevo.social/@.. @GBIF
15K Followers 6K Following News from the GBIF Secretariat. Tweets mainly by @kylecopas.
DataBeers Copenhagen @databeers_cph
466 Followers 278 Following Love data, love beer? Join us! By @sandrofsousa, @sdesojo, @jonassjuul, @lcb0b, @arianna_pera1 and many more! Inspired by @databeers
UCPH Social and Symbi.. @SocSymEvo
1K Followers 3K Following Welcome to the UCPH Social and Symbiotic Evolution Group Twitter! Facebook page: https://t.co/rX36VuDemc
ARC Tracker's *Bot Tw.. @ARC_Tracker_Bot
2K Followers 1 Following *Unattended account*. Instantly reposts @ARC_Tracker's bot. Turn on notifications to know when new ARC grant outcomes are released publicly – see pinned tweet.
Yosuke Nishimura @ysknishimura
546 Followers 487 Following メタゲノムデータをフル活用した微生物の研究をしています。海洋研究開発機構 特任研究員Project Researcher in JAMSTEC. Metagenomics and bioinformatics.
SeqCode @seq_code
355 Followers 61 Following Registry: https://t.co/28MwYmgB3O | SeqCode: https://t.co/p5JhhPH9hi | Initiative: https://t.co/P4nB7cqcbe | Join the SeqCode Community: https://t.co/5dr9CirsK6 Public discussion: https://t.co/SlUi4h2eyn
Zamin Iqbal @ZaminIqbal
10K Followers 7K Following Professor of Algorithmic and Microbial Genomics at the University of Bath; Group Leader EMBL-EBI. Pathogens, genomics, genome graphs, antibiotic resistance
George Bouras @GB13Faithless
687 Followers 907 Following Bioinformatics @UniofAdelaide - phages, microbes and more
Nextfood @NextFoodco
202 Followers 67 Following Automated vertical farming for food professionals. Hyper fresh, high quality, highly nutritious, pesticide free vegetables grown locally anywhere, year round 🥬
Department of Conserv.. @docgovtnz
20K Followers 646 Following Department of Conservation | Te Papa Atawhai. Conserving our natural and historic heritage for all to enjoy now and in the future. Emergency? 0800 DOC HOT
Alan Stenhouse @alanstenhouse
616 Followers 1K Following Environmentalist, software dev, researcher, systems thinker/dreamer, has-been bballer. Citizen Science for conservation. Human-AI systems dev/research.
High Contrast @HighContrast
61K Followers 1K Following DnB producer, dj & Grammy nominated remixer Mgmt: [email protected] Agent: [email protected]
NZ Microbiological So.. @MicrobiologyNz
1K Followers 1K Following The official account of Te Manatōpū Mātai Koiora Moroiti | the New Zealand Microbiological Society. https://t.co/mWEiMmuvlJ
Annie West @anniegwest
427 Followers 477 Following She/Her | Microbial Ecologist | Postdoc with @GenomicsNZ at @AucklandUni | PhD in avian microbiomes 🐦🐣🌱avid hiker, bird fan, bookworm
Ben Schmidt / @benmsc.. @benmschmidt
10K Followers 1K Following VP of Information Design @nomic_ai, building new ways to interpret and shape embedding models. Onetime history/digital humanities prof. @bschmidt.bsky.social
Tiffany Mak @TiffSMak
135 Followers 309 Following Microbial Ecology | Fermentation | Food Systems Postdoc @ Microbial Food Lab @Sommergroup @DTUbiosustain PhD @TheCrick AFE @MPMIjournal Podcast @MPMIMicrogreens
Mitch Cowan @CowanMitch
749 Followers 804 Following Wildlife ecologist interested in animal movement, conservation, and impacts of disturbance. Whadjuk boodjar | @CharlesSturtUni | #quollpatrol 🐾
Raúl González-Pech .. @RaulGoch
992 Followers 1K Following Eberly Postdoctoral Fellow @penn_state | Comparative #Genomics | Computational Biology | #Symbiodiniaceae | Coral symbiosis | Evolutionary Genomics | 🇲🇽🏳️🌈
Dmitry Kobak @hippopedoid
7K Followers 239 Following Researcher at Tübingen University. Manifold learning, contrastive learning, scRNAseq data. Excess mortality. Born but to die and reas'ning but to err.
Sunil Mundra @msunilmundra
857 Followers 333 Following Assistant Professor, UAE University I Terrestrial ecologist I soil-plant-microbial interactions I ecosystem functioning I #Climatechange #Microbiome #AMR #Fungi
Kevin R Theis @KevinRTheis
498 Followers 425 Following Associate Professor, Wayne State University School of Medicine, Department of Biochemistry, Microbiology, and Immunology
Thomas Sharpton @tjsharpton
4K Followers 2K Following Microbiome surveyor, metagenome analyzer, bioinformatics programmer, and Associate Professor @oregonstateuniv
Monica Medina @momedinamunoz
2K Followers 963 Following Mom. Coral reef scientist and environmentalist. Diversity in STEM advocate. Former fencer. Diver. Sailor wannabe. https://t.co/FBV0xnoXCo 🇨🇴
Antonino Malacrinò @antonino_mal
519 Followers 753 Following Assistant Professor @AgrariaUniRC @UniRCMedi | Plants, microbiomes, evolution
Mike Martin @MuseumEvoGen
825 Followers 611 Following Evolutionary genomics from archival/museum specimens. Professor @ NTNU University Museum (Dept of Natural History).
Simon @bahrndorff
119 Followers 207 Following Associate Professor at Aalborg University | Ecophysiology | Arctic Biology | Thermal Adaptation | Climate Change | Insects as food and feed
Maria Elena Martino @mariaelemartino
959 Followers 477 Following Evolution & Microbiology. Wondering how microbes and animals evolve together 🦠🧫🐟🐚🌍 Associate Professor @UniPadova
Sarah Hird @sarahmhird
3K Followers 3K Following Assoc Prof @UConnMCB. EVOLUTION, microbiomes, bird guts, DEI in STEM, pro-choice, aspiring #antiracist, #AcademicMama, #WearOrange, hygge @sarahhird.bsky.social
Ostaizka @OstaizkaAizpu
87 Followers 28 Following
SandraBreumAndersen @SandraBAndersen
690 Followers 658 Following Evolutionary biologist interested in the social lives of bacteria. Associate Professor at the Center for Evolutionary Hologenomics, University of Copenhagen
Tomas Pueyo @tomaspueyo
336K Followers 548 Following Understand deeply how the world works today to navigate the world of tomorrow. Join 80k ppl in my free newsletter:
Marta Contreras @zugunruhe_96
116 Followers 331 Following PhD fellow at the University of Copenhagen | Arctic plant ecophysiology under changing climate 🌱
Michael Bunce @BunceDNA
807 Followers 608 Following Plays with DNA and discovers stuff. Views expressed are my own. Retweets are not an endorsement.
Kristian Steensen Nie.. @kristiansn89
5K Followers 3K Following Assistant Professor @cbssust @CBScph | Interested in behavior change, climate change mitigation, and biodiversity conservation
Richard McElreath �.. @rlmcelreath
46K Followers 2K Following Anthropologist @MPI_EVA_Leipzig - telling anyone who will listen that, if we are very careful and try very hard, we might not completely mislead ourselves
Polly Hemming @pollyjhemming
10K Followers 3K Following Director @TheAusInstitute's Climate & Energy Program. Climate integrity // Carbon markets // Greenwashing // Views my own https://t.co/pTDOqvwZ5y
This week the kitome paper reached 3,000 citations! It was our turn to bake for the departmental cake morning, so I made something inspired by Figure 1. (With apologies for the quality of the icing, this is not my strength) @_Faecal_Matters @pathogenomenick @MikeyJ
Q: What could GO WRONG with a major cancer genomics study in which tumours are sequenced to only 15x depth? A: An awful LOT! 😟 Our detailed reanalysis now out in @RSocPublishing: tinyurl.com/RSOSrebuttal 🧵👇 (1/18)
This was a trio-effort with @kevin_gori and Liz Murchison @tcgcambridge, we wish to thank the @RSocPublishing #RoyalSocietyOpenScience editors and reviewers who commented on our reanalyses & carefully (re-)read the original devil cancer genome study. 📜 🧵 (18/18)
... though is there a better way than re-examining the actual research data, in-depth, to openly improve the scientific record? The greater community perspective, assisting with the survival of this iconic marsupial, needs to stand above all personal interests. 🐾 🧵 (17/18)
I genuinely wish we never had to do this piece. It is painful to scrutinise and then criticise others’ work efforts to the high extent which we felt compelled to do here – especially when you value some of the devil researchers involved with the original study ☮️ ...
This is a big deal if true. @BioRender, can you comment on whether you allow CC BY open access for papers using your software?
@baym @wc_ratcliff @BioRender @cshperspectives I have explicit confirmation from Biorender that CC BY was not okay without explicit written permission obtained by writing to a specific non public email address. As of November 2023 no CC BY at all possible anymore.
I cannot imagine not doing it like that.
Apparently a thing some people routinely do is make a bunch of slides and then just roughly remember what they were going to say in response to each slide without speaker notes, I cannot imagine being able to do that.
I held out on giving a departmental seminar in my home department for more than a decade. Last Thursday, I gave a very UM-themed talk: The Team, The Team, The Team. Basically why scientists should fight the urge to be reductionists youtu.be/6bt7mM-_ovk
This Cell paper on the 'cancer microbiome' repeats all the mistakes that gave us the so-called 'fetal microbiome'. Inadequate contamination controls, no culture data, no microscopy. And is it really ecologically plaucible that 165 genera colonize tumors? cell.com/cell/fulltext/…
Enjoyed this wide ranging conversation on preprints, peer review, social media, and academic culture on @stemcellpodcast labcoatsandlifepodcast.com/ep-5-the-role-…
Save the date! #Tasting #Holobionts is an event where researchers and the public will delve into how #microbes shape an essential part of our lives - our #food - from #fish to #ferments. April 24 @evohologen will host this @forskdk event 18.30-21! More👇 forsk.dk/arrangorprofil…
I've been updating my list of @PacBio HiFi #metagenomics publications, and it looks like 2024 is off to a great start! I count 9 published studies so far (pre-prints not included), but let me know if I missed any. Here is a thread with the papers (alphabetical): 🧵 1/10
@drdevangm @ashleydfarley @GatesOpenRes The key is that by decoupling dissemination (biorxiv preprint) and review (3rd party), the review can be multidimensional and need not be done by a single entity nor at a single point in time 2/n
Reminder: Plan U urges funders to mandate preprints to a) provide a cheap easy way to make science they fund public b) get work out sooner to speed up science c) encouraging evolution of content/peer review But another thing has recently occurred to me.. 1/2
Gates foundation "will require preprints". New approach "aligns with a strategy known as Plan U." 👏👏 @gatesfoundation cgdev.org/blog/advancing…
"When it comes to climate, the Government seems to want praise for doing some right things, while doing more wrong things. "We wouldn't accept this behavior from our children. We shouldn't accept it from our leaders." - Climate & Energy Director @pollyjhemming #auspol
It's nuts that our governments not only allow, but actively subsidise, native forest logging in Australia. A dying industry with viable alternatives, running at a loss, decimating biodiversity, and being kept on life support by taxpayers. 🫠 #climate #biodiversity #auspol
Over the past 16 months, I've been patiently developing today's episode of Code Club. Check out how I use my git history to obtain 450+ versions of the same image and convert it into a GIF with ImageMagick youtu.be/B4tNS5CJtgM
Congrats @R_Eisenhofer, @OstaizkaAizpu and colleagues for the new publication on the comparative analysis of sequencing methods for genome-resolved metagenomics! journals.asm.org/eprint/K554J8Y… @evohologen @Globe_UCPH
The prevalence of controls in #phyllosphere #microbiome research: a methodological review #Viewpoint by @bradywelsh_ and @R_Eisenhofer 👇 📖 ow.ly/UXHI50QJoE8
@MicrobiomDigest @blekhman We have to be honest about the fact in any scenario like this the costs will only be passed on (to authors or subscribers) and there are real costs to running a journal. If we really want to reduce the spend we have to think radically about whether/how/which papers are evaluated.
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