Samarth Mathur @SamarthPhD
He/him | computational biologist Joined June 2021-
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Congratulations to former PhD student Dr. Samarth Mathur! Samarth won the Outstanding Dissertation Paper award from the Society for the Study of Evolution for his 2023 paper in Evolution. Great job, Samarth! academic.oup.com/evolut/article…
Glad to be a part of this study published today in #BMCEcoEvo @BMC_series examining the evolutionary history of Speckled Dace, a fascinating and unique desert fish, using genomics and bioinformatics. Congratulations to all the coauthors!
Glad to be a part of this study published today in #BMCEcoEvo @BMC_series examining the evolutionary history of Speckled Dace, a fascinating and unique desert fish, using genomics and bioinformatics. Congratulations to all the coauthors!
New in ME! Snake fungal disease (SFD) infects >40 🐍 species. Experimental transcriptomics by @SamarthPhD et al show SFD is likely systemic with chronic effects on hosts with 🥶❄️ temperature often resulting in severe responses. link-> buff.ly/47Bp3A7 📸 @AnacondrewMason
My commentary in PNAS on a very nice genomics paper on endangered Massasauga rattlesnakes by @SamarthPhD Samarth Mathur, Lisle Gibbs, @GibbsLabOSU et al. x.com/SamarthPhD/sta…
My commentary in PNAS on a very nice genomics paper on endangered Massasauga rattlesnakes by @SamarthPhD Samarth Mathur, Lisle Gibbs, @GibbsLabOSU et al. x.com/SamarthPhD/sta…
Is neutral genetic variation a good predictor of the variation that matters? pnas.org/doi/10.1073/pn…
With newer and “smarter” algorithms to efficiently run on smaller computers, AI can come to your personal home devices like echo devices, door cameras, robots. #neuralnetworks #AI 🧠📷🤖 Optimizing neural networks for special-purpose hardware amazon.science/blog/optimizin…
I am elated to see that our study on the relationship between functional and neutral genomic diversity in #rattlesnakes was highlighted in this week’s issue of @PNASNews. 🤩 The article pnas.org/doi/10.1073/pn… @GibbsLabOSU @OhioState
I am elated to see that our study on the relationship between functional and neutral genomic diversity in #rattlesnakes was highlighted in this week’s issue of @PNASNews. 🤩 The article pnas.org/doi/10.1073/pn… @GibbsLabOSU @OhioState
Genome-wide estimates of neutral diversity predict levels of adaptive diversity and deleterious mutations in a rare snake. Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake | PNAS pnas.org/doi/10.1073/pn…
Anybody looking for a postdoc in evolutionary genomics and conservation biology? Please RT. #jobposting #HiringAlert #postdocjobs #academia
Anybody looking for a postdoc in evolutionary genomics and conservation biology? Please RT. #jobposting #HiringAlert #postdocjobs #academia
Happy and proud to share that our article describing the evolution of #geneticLoad in Montezuma Quail populations was featured as cover for the March issue of Evolution journal @journal_evo @sse_evolution academic.oup.com/evolut/article…
Happy to share that our (@AndrewDeWoody and I) work on describing the differences in #geneticload between large and small populations using genomics received enough citations to be a #topCitedArticle in @EvolAppJournal onlinelibrary.wiley.com/doi/10.1111/ev…
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507 Followers 237 Following Bachelor's @DukeU | PhD candidate @Stanford studying conservation genomics| NSF GRFP Fellow | CMB Training Grant | just tryna save the animals #BlackLivesMatter
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Hernán Morales @HernMoral
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On what should have been Marie’s 19th birthday, I wanted to will myself to place of gratitude and celebration of the years that we were graced with her presence, but grief said, “not yet” as it washed over me and felt as fresh as the day she died. #missingmarie
Congratulations to former PhD student Dr. Samarth Mathur! Samarth won the Outstanding Dissertation Paper award from the Society for the Study of Evolution for his 2023 paper in Evolution. Great job, Samarth! academic.oup.com/evolut/article…
New paper out on wildebeest genomics 🧬 We trace evolutionary history of the black and blue wildebeest, elucidating the negative effects of human-induced habitat fragmentation on highly migratory ungulates.
Check out our new paper on wildebeest in @NatureComms! 🎉 We find evidence for archaic introgression of the black wildebeest into the blue wildebeest and detrimental effects of human activities on migratory populations. Congrats to all authors involved! nature.com/articles/s4146…
Found a shared genomic segment (IBD) of a modern genome with a Medieval individual? It does not imply an exceptional genealogical connection, really! Read more in our short @ConversationUK piece (inspired and led by @ShaiCarmi) ⬇️ theconversation.com/dna-says-youre…
Excited to be part of this study examining the evolutionary history of giraffes🦒using genomics🧬 Congrats to all the coauthors!
New paper out! 🎉🎉🎉 We take a deep dive into the evolutionary history of giraffes. 🦒 There is a lot of discussion about if this is 1 species (as it is currently on the IUCN Red List) or actually more than 1. This is crucial to guide conservation. 🧵 authors.elsevier.com/sd/article/S09…
Ok this is kinda neat: If you give researchrabbit.ai a scientific paper it will generate a network of references and citations!
@SamarthPhD @BMC_series Thrilled to have had you on board. We could not have completed the demographic modeling without you!
New open access paper from my lab about Oregon’s endemic Foskett Spring Speckled Dace. Genetic approaches reveal a healthy population and an unexpectedly recent origin for an isolated desert spring fish. BMC Ecol Evo 24, 2 (2024). doi.org/10.1186/s12862…
Just before the end of the year, we got another paper out! 🎉🎉🎉 It was a rather long process, capturing the thoughts and experiences from all coauthors, addressing how we can do a better job integrating molecular tools into biodiversity conservation: conbio.onlinelibrary.wiley.com/doi/10.1111/cs… 🧵
To start the new year off well, we got another paper published! 🎉🎉🎉 We explore the evolutionary history of African bushpigs and their mysterious presence on Madagascar. The study was a team effort, with multiple collaborators, and co-led by @renzobalb, @AnnaBruniche and me. 🧵
🧬 New study uses simulations to investigate genetic rescue (GR) & trait evolution The authors delve into factors shaping the success of GR, like trait complexity and dominance effects. See the paper here: doi.org/10.1093/jhered… 1/2
New in ME! Snake fungal disease (SFD) infects >40 🐍 species. Experimental transcriptomics by @SamarthPhD et al show SFD is likely systemic with chronic effects on hosts with 🥶❄️ temperature often resulting in severe responses. link-> buff.ly/47Bp3A7 📸 @AnacondrewMason
Also wanted to add a special note of thanks to great mentors along the way. Including @fieldgenomics & Eric Anderson , @markrchristie, @AKSalmonWatch & Jeff Falke, and Lisa Eby. Can't thank them and others enough for their investment, mentorship, and kindness over the years.
Now that the ink is dry, I am excited to share that in Jan 2024 I will be starting as a Research Fish Bio with the @usfs_rmrs in the Water & Watersheds group. I will be in CO for the first bit of 2024 but join the main W&W office in Boise later next year.
Functional genomic diversity is correlated with neutral genomic diversity in populations of an endangered rattlesnake pnas.org/doi/10.1073/pn…
My commentary in PNAS on a very nice genomics paper on endangered Massasauga rattlesnakes by @SamarthPhD Samarth Mathur, Lisle Gibbs, @GibbsLabOSU et al. x.com/SamarthPhD/sta…
Stemming from the discourse in conservation bio & molecular genetics, our study shows adaptive & neutral variation is indeed correlated, But it’s more nuanced, as recent population declines breaks the link & makes future assessments less predictable | PNAS tinyurl.com/FgdNgd
Is neutral genetic variation a good predictor of the variation that matters? pnas.org/doi/10.1073/pn…
4 years in the making…successfully defended my doctoral dissertation and officially Dr. Ilinca Ciubotariu now! It has been an exciting journey and so grateful for every opportunity that has brought me to this point. Excited for what’s next! 👩🎓🤩 #PhDone
Read highlights in this week’s issue of PNAS: We examine genetic diversity in an endangered rattlesnake, explore prehistoric farming in Northern Europe, and study early Earth collisions and the origin of precious metals. ow.ly/qfnX50Q0NzP
Falling behind: postdocs in their thirties tire of putting life on hold. Read the results of Nature’s second global survey of postdoctoral researchers go.nature.com/3Qtd4hI
In this issue: Neutral and functional genetic diversity in an endangered rattlesnake; prehistoric farming in Northern Europe; early Earth collisions and origin of precious metals. ow.ly/ccA850Q0msb
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