Sirota Lab at UCSF @SirotaLab
Embracing a multitude of computational methods, biomedical data, & unique perspectives to advance precision medicine - & having a lot of fun in the process! sirotalab.ucsf.edu San Francisco, CA Joined September 2021-
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It is with a mix of emotions that I finally announce this work, my very last w/ @atulbutte. Atul believed in the power of open data and our ability to learn from the data we already have to improve healthcare now. This work is a tribute to this belief, made possible by his career
Tremendous thanks to Martin Papenberg, Cheng Wang, Maïgane Diop, Syed Hassan Bukhari, Boris Oskotsky, Brittany Davidson, Kim Chi Vo, Binya Liu, Juan C. Irwin, Alexis J. Combes, Brice Gaudilliere, Jingjing Li, David K. Stevenson, Gunnar W. Klau, Linda C. Giudice, and Marina Sirota
Our Anticlust article by Papenberg et al. is now published in Cell Reports Methods, cell.com/cell-reports-m…, and featured on their cover, cell.com/cell-reports-m… 🎉 @UCSF_BCHSI @HHU_de @UCJointCPH @StanfordMed
Today, tech & health communities remember life of @atulbutte & celebrate @UCSF_BCHSI 10 years. Colleagues revealed a single person & approach - optimism-generosity-expertise - can shape the future of an industry. His protege @msirota84 of his words to her: Take it, run with it!
Train UCSF-GPT at Cost of a Costco membership... Rohit Vashisht @UCSF_BCHSI
Scientists at Gladstone and @UCSF have identified a combination of two anticancer drugs that the researchers suggest may reverse the changes that occur in the brain during Alzheimer’s disease, potentially slowing or even reversing its symptoms. bit.ly/3Jhfgbi
Using big data to tackle endometriosis! Umair Khan from our lab combined AI and large-scale health records to uncover new insights into a disease that affects millions, out in Cell Reports Medicine today. @SirotaLab @UCSF_BCHSI @CellPressNews ucsf.edu/news/2025/07/4…
What does the next 10 years of @UCSF_BCHSI will look like? @vivicality
We are excited to introduce a dedicated Agent Track as part of the SEA-AD DREAM challenge! Informational webinar on Monday 8/11, 3pm PT synapse.org/Synapse:syn664… Join our worldwide challenge leveraging #snRNAseq data & cutting-edge #AI/#ML approaches. #Alheimers #neuropathology
Excited to announce the SEA-AD DREAM on @SynapseOrg! Join the global research community to tackle AD using single cell data and innovative AI/ML solutions. Let’s accelerate discovery together! synapse.org/Synapse:syn664… @AllenInstitute @DR_E_A_M @Sagebio @SirotaLab @UCSF_BCHSI
The SEA-AD DREAM Challenge is now live on @SynapseOrg🧠🧑💻 Join this worldwide challenge leveraging single-cell data and cutting-edge AI/ML approaches. P.S. An exciting announcement will be coming - stay tuned! #MachineLearning #Alzheimer #OpenScience synapse.org/Synapse:syn664…
The SEA-AD DREAM Challenge is now live on @SynapseOrg🧠🧑💻 Join this worldwide challenge leveraging single-cell data and cutting-edge AI/ML approaches. P.S. An exciting announcement will be coming - stay tuned! #MachineLearning #Alzheimer #OpenScience synapse.org/Synapse:syn664… https://t.co/UuAu8NHCbq
How can researchers identify effective drug combinations to treat Alzheimer's disease by targeting different brain cell types simultaneously?@CellCellPress @UCSF_BCHSI "Cell-type-directed network-correcting combination therapy for Alzheimer’s disease" • Alzheimer's disease…
FDA-approved cancer drugs reversed brain changes tied to Alzheimer’s and brought back memory. UCSF and @GladstoneInst researchers combined patient data with genetic analysis to fast-track a potential new treatment. tiny.ucsf.edu/579NOK
What an honor to be able to be able to share our work on KTVU this morning: ktvu.com/video/1678554 with my former graduate student Dr. Yaqiao Li! @UCSF_BCHSI @SirotaLab @GladstoneInst
The UCSF community mourns the passing of Atul Butte, MD, PhD, a bold thinker, inspiring mentor and founding director of the Bakar Computational Health Sciences Institute. tiny.ucsf.edu/tGz3QY
Now online! Cell-type-directed network-correcting combination therapy for Alzheimer’s disease dlvr.it/TM2Wj7
Do These Two Cancer Drugs Have What It Takes to Beat Alzheimer’s? @UCSF @SirotaLab @GladstoneInst Yadong Huang publish in @CellCellPress ! ucsf.edu/news/2025/07/4…
A new study has identified FDA-approved cancer drugs that reverse gene expression signatures associated with Alzheimer’s. gladstone.org/news/combinati…
.@msirota84 on how she and colleagues used the EHR, genetics data & @UCSF_BCHSI SPOKE knowledge graph to improve predictive power for #Alzheimer's among women, and detect links with #osteoporosis. For more research highlights, connect to CPH YouTube channel (link in bio)!
Today, 3/26 at 6-7pm. Join us online for this webinar! AI, Research, and Future Innovations for Endometriosis and Beyond in the Era of Precision Medicine
Today, 3/26 at 6-7pm. Join us online for this webinar! AI, Research, and Future Innovations for Endometriosis and Beyond in the Era of Precision Medicine
Atul Butte @atulbutte
30K Followers 4K Following Chief Data Scientist @UofCAHealth・Director, Bakar Computational Health Sci Institute @UCSF_BCHSI・Distinguished Prof @UCSF・Entrepreneur・He/him・Opinions ⇨ my own
Ryan Hernandez @rdhernand
3K Followers 2K Following From busboy/car washer to population geneticist @UCSF, co/Director of the BMI PhD program, Initiative for Digital Transformation, & @UCSF_PROPEL Program!!!
Dr. Joel Babdor (he/h... @JoelBabdor
5K Followers 3K Following Asst. Prof. @PennMed👨🏿💻👨🏿🔬 #Translational #Immunology #Microbiome #PrecisionMed 🖤🚴🏿♂️🧗🏿🌱📷
tomiko oskotsky @tomiko22
191 Followers 154 Following
UCSF Bakar Computatio... @UCSF_BCHSI
2K Followers 2K Following Bakar Computational Health Sciences Institute at the University of California, San Francisco
Dimitri Abrahamsson @DimiAbrams
781 Followers 1K Following Chemistry and computer science nerd | Assistant Professor at @UCSF | All things mass spectrometry and environmental contaminants 🎗️
Madhumita Sushil @madhumitasushil
549 Followers 838 Following Assistant Professor @UCSF_DOCIT, @NeurosurgUCSF, @UCSF_BCHSI. Prev clinical NLP, neural network interpretability @clipsua, @Google Research
Andrea Lo Sasso @_a_l_s
416 Followers 725 Following PhD student in Physics of Complex Systems @unibait / @dnds_ceu. AI, Networks, Big Data. Intern @UN , Erasmus+ @Sorbonne_Univ_ .
Luis Moreno @lmorenosilva
500 Followers 6K Following La esperanza no es la convicción de que las cosas saldrán bien, sino la certidumbre de que algo tiene sentido sin importar el resultado final. Václav Havel
Ines Ross Tacco, MS @IneRoss
54 Followers 111 Following Research Assistant - cardiovascular disease | Passionate about exploring the complexities of life 🥼🧬| Proud Latina 🇦🇷| Crafter 🧵🧶
Mount Sinai Exposomic... @SinaiExposomics
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Network for Exposomic... @nexusexposomics
70 Followers 55 Following A center and movement, in partnership with the NIEHS, to understand how our environments or exposome shape human health.
Hyd Away @HydAway
139 Followers 1K Following
Angela Rizk Jackson @rizkjackson
27 Followers 42 Following
Brian Hodge @Brian_Hodge_
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Pia Campagna @PiaCampagna
737 Followers 2K Following Postdoc @UCSF Weill Institute for Neurosciences w Dr Riley Bove. Studying molecular mediators of post-menopausal brain health. Supported by @_aaausa
mkenaani6 @mkenaani6
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Seyed Reza Mirjalili,... @rezamrjMD
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Thothio @ThothioDetTUk
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Cora Han @_corahan
10 Followers 107 Following Interested in privacy, data stewardship, and health tech; ex-FTC; Chief Health Data Officer at UCH; views are my own
Dr Suneetha Mekala @DrSumekala19
12 Followers 137 Following Doctor, Health Informatics, Healthcare Applications, Clinical Research, Biostatistics, ML, Clinical NLP
Ryan Dhindsa @RyanDhindsa
1K Followers 742 Following Assistant Professor @bcmhouston & @TexasChildrens | Consultant @AstraZeneca | Human genetics and single-cell genomics | Formerly @ColumbiaMed & @DukeU
Doctor as Designer @joyclee
12K Followers 3K Following Joyce Lee, MD, MPH Checking out https://t.co/57VYyyxDPm @ACMIO @umichmedicine #tableau #hit #ai #learninghealthsystems #HealthDesign
Syed Ali Raza (Ali) @Ali_SyedRaza
3K Followers 6K Following MD. Neurologist. Neuroimmunology fellow at @NIH/@NINDSnews - The Reich lab. Neurology/Neuroscience/Immunology/Physics/Math. Opinions are my own.
JCI insight @JCI_insight
40K Followers 2K Following High-quality basic and translational research representative of all biomedical specialties and physician-scientists. Bluesky: https://t.co/Kz22hHNYOU
Bernardo Chombo Álva... @ChombOmics
153 Followers 491 Following 🧬 Mexican Genomic Sciences undergraduate student from UNAM, @lcgunam. Interested in Alzheimer's neurodevelopmental involved genes, proteomics & transcriptomics
AIformedicine @ai4medicine4
563 Followers 7K Following
Vivek Rudrapatna @vivicality
841 Followers 1K Following Assistant Professor, GI/IBD physician, healthcare #AI researcher, aspiring global citizen.
Zicheng Hu @ZichengHu
98 Followers 75 Following
Bethology @prussian_blue24
699 Followers 4K Following 🌴🥥| Informatics | Digital & Computational Pathology | CHI/BOS | IMG on the #path2path 🔬🧫 #pathmatch #pathtwitter #pathx |We rise by lifting each other 💪🌞
Gabrielle Rabadam @Gab_Rabadam
8 Followers 34 Following comp bio by way of BioE phd @Cal + @UCSF🐻🇵🇭 interpretable ML🕸✖️🧮 for biologists + clinical scientists 🩺🥼
Kacey Medrano @KaceyMedra21654
2 Followers 213 Following
IgwePorts_Activator�... @AweBusayo
210 Followers 2K Following
Xinyang Han @Xinyang_Han_
110 Followers 641 Following Generative modeling and unsupervised learning at scale.
Wector @Wector18
16 Followers 289 Following bioinformatics DNA damage DNA repair genomics RNA-seq multi-omics data data analysis machine learning
UCSF Broad Stem Cell @UCSFstemcell
1K Followers 779 Following Discovering the inner workings of stem cells, engineering treatments using genome editing tools, and healing patients by developing life-saving therapies.
Qihui Lyu @QihuiL
133 Followers 240 Following Assistant Professor of Medical Physics @UCSF Radiation Oncology | @UCLA alumna
Roman Gelman @Groman78
19 Followers 200 Following
Soumyadeep Roy @roysoumya1
212 Followers 937 Following Postdoc at Stanford Medicine | Prev: GE Healthcare, PhD @ IIT Kharagpur, L3S Research Center, Germany | Generative AI for Medicine, Natural Language Processing
Miri Krupkin @MiriKrupkin
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Gouri Rajaram @GouriRajaram
140 Followers 511 Following RA @nyulangone • population genetics Prev : @fredhutch @DukeU Biotech Undergrad @iitkgp.
Abolfazl Arab (Abe) @abe_bio
315 Followers 1K Following PhD student @UCSF • Past: RA @arcinstitute @UCSF, Post-bac @HarvardDBMI • B.S. M.S. @UnivOfTehran
Audrey S @saudrey565
0 Followers 376 Following
Ted Goldstein @tedgoldstein
100 Followers 110 Following
NN @NirN2000
44 Followers 2K Following
Justin @Hearnsy26
54 Followers 321 Following
Victoria Colliver @vcolliver
5K Followers 2K Following Writer. Californian. Media relations/comms @UCSF. Former POLITICO health care reporter, San Francisco Chronicle alum. [email protected].
Hong-Yu Zhou @HongYuZhou14
300 Followers 302 Following (he/his/him) PostDoc @HarvardDBMI | AI for Medicine/Health | PhD from @HKUniversity
Cathrine Sant (Peters... @cathrine_sant
1K Followers 581 Following Postdoc @GladstoneInst · Methods development for single-cell data analysis & applications to Alzheimer's
Dr. Yosra Mekki, MD @Yosra_Mekki
771 Followers 3K Following Physician-engineer on a mission to advance athlete health innovation @uniofoxford to shape how we treat sports injuries. I edit @npjdigitalmed.
Lydia Rader PhD @LydiaRader
487 Followers 811 Following Postdoc @IBG_CUBoulder | Genetic epidemiology of chronic pain & mental health
Graduate Education an... @UCSFGradDiv
1K Followers 705 Following The Graduate Division is the home of graduate education and postdoctoral scholarship at UC San Francisco.
Goldgof Lab @greggoldgof
15 Followers 54 Following News from HemeAI Lab at Memorial Sloan Kettering Cancer Center. Artificial Intelligence Diagnostic Development for Hematologic Diseases/Hematopathology
Atul Butte @atulbutte
30K Followers 4K Following Chief Data Scientist @UofCAHealth・Director, Bakar Computational Health Sci Institute @UCSF_BCHSI・Distinguished Prof @UCSF・Entrepreneur・He/him・Opinions ⇨ my own
Ryan Hernandez @rdhernand
3K Followers 2K Following From busboy/car washer to population geneticist @UCSF, co/Director of the BMI PhD program, Initiative for Digital Transformation, & @UCSF_PROPEL Program!!!
Dr. Joel Babdor (he/h... @JoelBabdor
5K Followers 3K Following Asst. Prof. @PennMed👨🏿💻👨🏿🔬 #Translational #Immunology #Microbiome #PrecisionMed 🖤🚴🏿♂️🧗🏿🌱📷
tomiko oskotsky @tomiko22
191 Followers 154 Following
UC San Francisco @UCSF
75K Followers 437 Following UC San Francisco is the leading university exclusively focused on health. @UCSF on Instagram, Facebook, LinkedIn and YouTube
UCSF Bakar Computatio... @UCSF_BCHSI
2K Followers 2K Following Bakar Computational Health Sciences Institute at the University of California, San Francisco
Dimitri Abrahamsson @DimiAbrams
781 Followers 1K Following Chemistry and computer science nerd | Assistant Professor at @UCSF | All things mass spectrometry and environmental contaminants 🎗️
Madhumita Sushil @madhumitasushil
549 Followers 838 Following Assistant Professor @UCSF_DOCIT, @NeurosurgUCSF, @UCSF_BCHSI. Prev clinical NLP, neural network interpretability @clipsua, @Google Research
UCSF Rheumatology @UCSFRheum
768 Followers 95 Following Rheumatology Division at the University of California, San Francisco @UCSF | Advancing #Rheumatology through research, education, and outstanding clinical care.
Aleksandar Rajkovic @Aleks_Rajkovic
532 Followers 70 Following Physician, scientist, tennis and soccer lover and father of three beautiful adults. All of the views are my own.
Nima Aghaeepour @NimaAghaeepour
2K Followers 724 Following Professor @Stanford working on AI and Medicine. Also an airplane and wingsuit pilot, former StarCraft2 Grandmaster, and recent girldad.
Vivek Rudrapatna @vivicality
841 Followers 1K Following Assistant Professor, GI/IBD physician, healthcare #AI researcher, aspiring global citizen.
Zicheng Hu @ZichengHu
98 Followers 75 Following
Jean Feng @Jean_J_Feng
502 Followers 472 Following UCSF prof in biostat. Interested in AI safety, reliability, and interpretability. https://t.co/A2ueSXKTjf Co-lead of ZSFG PROSPECT lab https://t.co/MVG2WAygu1
Chris Williams @cykwilliams
85 Followers 88 Following Postdoc @UCSF_BCHSI Butte lab. MD alum @Cambridge_Uni. Previously AFP @CUH_NHS.
March of Dimes @MarchofDimes
60K Followers 3K Following March of Dimes leads the fight for the health of all moms and babies.
Ana Laura Almonte @AnaLauraAlmont1
118 Followers 148 Following Bioinformatics PhD student @UCSF @SirotaLab & Data Science CoLab she/they 🇲🇽
Rankin Lab @Rankin_Lab
503 Followers 171 Following The Socioemotional Neuropsychology Research Group, led by Dr. Kate Rankin, professor & neuropsychologist @ UCSF Dept of Neurology's Memory and Aging Center
Patricia Diaz-Gimeno @PatriDiazGimeno
276 Followers 534 Following Researcher in Reproductive Personalized Medicine. Group Leader in #Genomics & #Bioinformatics Unit for Women #Fertility @iviclinics @IIslafe
Precision Medicine Wo... @PMWCintl
5K Followers 3K Following Leading precision medicine forum hosting the latest initiatives in #healthcare & #biotech, est. 2009 Register for PMWC Mar4-6: https://t.co/iRs7K0eAOz
Ben Glicksberg @BenGlicksberg
1K Followers 843 Following Associate Professor @IcahnMountSinai #DigitalHealth + #PrecisionMedicine + #AI Past: @CharacterBio @UCSF
Nadav Rappoport @nadavrap
81 Followers 42 Following Big Biomedical Data (Science) Ben-Gurion University of the Negev (@bengurionu)
AnaMariaDeLuca @anamariadeluca
133 Followers 492 Following sillysmartdarkandstrange. my views are my own.
UC Joint Computationa... @UCJointCPH
1K Followers 674 Following Pioneering a new discipline joining the power of AI, clinical/public health excellence, and equity.
Sarah Aerni @iTweetSarah
2K Followers 1K Following I lead Machine Learning and Engineering @Salesforce Einstein. Previously @pivotal data science. @stanford Biomedical Informatics PhD @ucsd alumna
Dena Dubal @DenaDubal
4K Followers 1K Following Neuroscientist, Neurologist, and Aging Researcher at UCSF
Sweet-Cordero Lab @ U... @SweetCorderoLab
552 Followers 400 Following Lung cancer & pediatric sarcomas: functional genomics, synthetic vulnerabilities, GEMMs, metastasis models. Account run by Labbies and @ASweetCordero.
Tim Wen @TimWenWhereWhat
751 Followers 845 Following Big data to improve 🤰care | @KECKSchool_USC➡️@ColumbiaWomens➡️@UCSF_ObGynRS MFM/@UCSF_DOCIT CI & @DelfinaCare➡️Asst Prof @UCSD_ObGyn & @ucsddbmi
Idit Kosti @iditkosti
65 Followers 115 Following
UCSF Helen Diller Fam... @UCSFCancer
10K Followers 2K Following Championing basic science, clinical research, epidemiology/cancer control, and patient care. Contact: [email protected]
Mesude Bicak @MesudeBicak
213 Followers 431 Following Senior scientist #bioinformatics #cancervaxdesign @BhardwajLab Past: #alzheimers @BenGlicksberg Lab #prostatecancer KleinLab @Sinai #metagenomics @UniofOxford
University of Califor... @UofCAHealth
5K Followers 358 Following A health care system improving the health and lives of Californians through 21 health professional schools and 6 nationally recognized academic health centers.
Boris Oskotsky @oskotsky
30 Followers 32 Following
Daniel Kim @ProfDanielKim
4K Followers 5K Following Assistant Professor @BaskinEng @UCSC | Associate Member @CanaryCenter @Stanford | Research Scholar @AmericanCancer | Chair, Media & Communications @RNASociety
Geetha Saarunya, PhD @DrSaarunya
583 Followers 1K Following #ML #GIS #omics👩🏻🔬 Assistant prof of Surgery @UMNSurgery @UMN_TCRTC #mum to 👧🏽👦🏽
Noam Teyssier @noamteyssier
545 Followers 515 Following Bioinformatics Scientist at the Arc Institute. Working on bioinformatics tools for functional genomics and ML in single cell.
Amy Padula @PadulaAmy
384 Followers 756 Following Fellow @HIAS_Hamburg; Associate Professor @UCSF_ObGynRS; Environmental and Perinatal Epidemiologist @UCSF_PRHE; 🔥🤰👩🍼
Jessica Neely @Jessica_NeelyMD
15 Followers 22 Following
Evonne McArthur @EvonneMcArthur
511 Followers 383 Following IM + Medical Genetics resident @UWDeptMedicine | MD/PhD @VanderbiltMSTP via @UNC | Computational approaches to genetics, medicine, education | 💻🧬🩺☀️
Johns Hopkins Memory ... @JH_Memory_Aging
3K Followers 3K Following A JHU Alzheimer’s Disease Research & Treatment Centers collaboration sharing #Aging #Research & promoting #Brain #Health and #Memory & #Caregiver #Resources.
KattahLab @MikeKattahMD
997 Followers 1K Following Assistant Professor at the Mayo Clinic, Gastroenterologist, physician-scientist, working to advance care for patients with IBD.
ShorterLab @ShorterLab
12K Followers 7K Following Countering deleterious phase transitions in ALS/FTD, PD, AD, and related disorders @Penn @PennMedicine @bb_upenn @BMBGGUPENN @PGGUPenn @PennNGG @CAMBUpenn
UC Santa Cruz Genomic... @ucscgenomics
6K Followers 4K Following Unlocking the world's genomic data to accelerate medical and scientific breakthroughs. We're also on 🐘 and 🧵! @UCSCgenomics
Henry Schaefer @hcschaefer
141 Followers 846 Following
Raya Faigenbaum-Romm @RayaRomm
331 Followers 801 Following Postdoc at @BalabanLab @HebrewU, combining experimental and computational tools to study heterogeneity in bacteria. https://t.co/0yjRww1q58
Demi Sandel @DemiSandel
909 Followers 1K Following Postdoc @UCSF in the labs of @r_rutishauser and @spitzerlab | Previously @labjacks and @newmanlatech
Jovia Nierenberg @JoviaNierenberg
95 Followers 481 Following
Nishant Jain @najain1
51 Followers 64 Following CEO / Co-Founder @ Miravoice | AI Voice Interviews & Surveys | ex-Google, Stanford, Yale, Neo
Colm Ryan @colmr
2K Followers 3K Following Systems biology | Bioinformatics | Cancer | Genetic interactions. Views my own. @colmr.bsky.social
Joe Balintfy @JoeBalintfy
326 Followers 446 Following Son of a scientist, father of a daughter, and senior public affairs specialist at @NIHAging. Views = my own.
Manoj T @ManuTeltumbade
59 Followers 302 Following Chief Scientific Officer & Founding Team Member at CognitiveCare | PhD, Genomics @IGIBSocial | Healthcare AI | Tweets my own
Laura Dwyer @LauraDwyer80
166 Followers 328 Following PhD candidate at @ucsf in @ScharschmidtLab, interested in immunometabolism & early life immunology, @IgEquity member, @UMassAmherst Microbiology alum
Manish Paranjpe @ManishParanjpe
155 Followers 150 Following
Ishan Paranjpe @ParanjpeIshan
292 Followers 348 Following PGY1 intenal medicine resident @Stanford Leveraging big data and genomics to advance precision medicine Previously at @UCBerkeley, @UCSF_BCHSI, Mount Sinai
Bin Chen @DrBinChen
647 Followers 683 Following interested in big data + AI + drug discovery. PI @MSU, @UCSF. Trained @ IU, Stanford, Merck, Pfizer and Novartis. 来自重庆土家山寨.Trends for United States
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