Systems Genomics @SysGenResearch

Systems Genomics Research | Papers, News etc | Multi-omics integration, genomic prediction, microbes & infection | @minouye271 @drkatholt Joined April 2015

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PGS Catalog @PGSCatalog

6 years ago

Very excited to present the Polygenic Score (PGS) Catalog (PGScatalog.org) at #ASHG19, a new resource to improve accessibility & reproducibility of published PGS! An excellent collab of @emblebi (@GWASCatalog), @Cambridge_Uni (@CAMBRIDGE_CEU) & @HDR_UK

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Sam Lambert @iamslambert

6 years ago

The first paper from my post-doc - check out our thoughts on the value of polygenic risk score (PRS) predictions and their potential for clinical utility! w/ @GadAbraham1 & @minouye271

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

6 years ago

A fantastic conference coming up👇👇 We'll be there and so should you! 😸

Wellcome Connecting Science Learning and Training @eventsWCS

6 years ago

A fantastic conference coming up👇👇 We'll be there and so should you! 😸

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

We're looking forward to a great crowd!

Wellcome Connecting Science Learning and Training @eventsWCS

7 years ago

We're looking forward to a great crowd!

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

We couldn't be prouder of @ShuMeiTeo! It's going to be an exciting year to come for us @CamBakerSGI, with more excellent (if not award-winning) science on the way! @DPHPC @BakerResearchAu

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Randy Olson @randal_olson

7 years ago

#DataScience #10yearschallenge from reddit.com/r/datascience/…

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

Our Australian-Anglo research efforts in genomic risk of heart attack were also wonderfully summarised recently by @liammannix 👇👇👇 smh.com.au/national/game-…

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

Together with @Cambridge_Uni, @BakerResearchAu is intensely researching ways, including genomic risk scores (onlinejacc.org/content/72/16/…) to identify subgroups at high risk of heart attack These subgroups may be efficiently targeted for expensive therapies like PCSK9 inhibitors

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Ed Yong is not here @edyong209

7 years ago

"Despite having virtually identical DNA, the twins did not receive matching results from any of the [five genetic ancestry] companies." cbc.ca/news/technolog…

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

Power, false discovery rate and Winner’s Curse in eQTL studies Published @NAR_Open by @qinqin_huang @sritchie73 @MartaBrozynska @minouye271 academic.oup.com/nar/article/46…

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Dr. Scott C. Ritchie @sritchie73

7 years ago

Anyone curious about the quandaries and ethical concerns around consumer DNA testing need look no further than the all time top threads on the 23andme subreddit reddit.com/r/23andme/top/…

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Zamin Iqbal @ZaminIqbal

7 years ago

I'm recruiting! Bioinformatician to lead the sequence analysis pipelines for 100k M. tuberculosis genomes at @emblebi for @crypticproject. Great computational resources and team. If you have some of: nextflow, singularity, python, variant calling expertise - call me! 1/n

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Stephen Bentley @StephenBentley5

7 years ago

PhD position (London / Nagasaki / Nha Trang, UK / Japan / Vietnam) PHYLOGENETIC INFERENCE OF PNEUMOCOCCAL TRANSMISSION IN VIETNAM - Exciting PhD opportunity iddjobs.org/jobs/phylogene… via @IDDjobs

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Mehrad Hamidian @MehradHamidian

7 years ago

Study on “Evolution of a clade of @A_baumannii global clone 1, lineage 1 via acquisition of carbapenem resistance genes and dispersion of ISAba1” is out now! Thanks to @yekwah @rrwick @DrKatHolt and Ruth Hall. mgen.microbiologyresearch.org/content/journa… @ithreeinst @UTSResearch @MicrobioSoc

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

Dame Bridget Ogilvie. Born & raised in NSW, she did her PhD @Cambridge_Uni & spent her career studying immune responses to nematodes. In 1991 she became Director @wellcometrust, playing a key role in facilitating @sangerinstitute & the Human Genome Project

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Michael Chew @MichaelWKChew

7 years ago

Congrats, Kat! Rich & fruitful collaboration over the years with many @wellcometrust scientists @MORUBKK @OUCRU_Vietnam @MlwTrust @sangerinstitute on enteric infections esp typhoid. @Stephen_oucru @JeremyFarrar @BasnyatBuddha @VinhChau_Nguyen @MelitaGordon5 @nrt_thomson @T7Hien

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Marilyn Mann @MarilynMann

7 years ago

Was recently told I have high (84th percentile) polygenic risk for coronary artery disease through @MyGeneRank study. Was reading a recent paper in @JACCJournals using UK Biobank data. @minouye271 @JohnNDanesh onlinejacc.org/content/72/16/…

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Claire Gorrie @ClaireGorrie

7 years ago

PhDone! After handing in the thesis and passing earlier this year, I finally got to graduate yesterday! Long PhD journey but loved (almost) every moment of it 😁 Thanks in particular to my main supervisor @DrKatHolt and the rest of the lab for getting me through!

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Cambridge Baker Systems Genomics Initiative @CamBakerSGI

7 years ago

Well done @BakerResearchAu on an Athena SWAN SAGE award! Very proud that both our partners, Baker and @Cambridge_Uni @DPHPC, are part of Athena SWAN.

Science in Australia Gender Equity (SAGE) @SciGenderEquity

7 years ago

Well done @BakerResearchAu on an Athena SWAN SAGE award! Very proud that both our partners, Baker and @Cambridge_Uni @DPHPC, are part of Athena SWAN.

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Zoe Anne Dyson @msmicrobiocode

7 years ago

Just updated Genotyphi github.com/katholt/genoty… to now type XDR Typhoid reported by Klemm et al in this paper mbio.asm.org/content/9/1/e0… as 4.3.1.1.P1. Genotyphi can also detect QRDR mutations and type H58 lineages 1/2.