UTK bioinformatics @UTKbioinform

Updates on bioinformatics research at @UTKnoxville in the Emrich group (@EECS_UTK) and elsewhere on campus web.eecs.utk.edu/~semrich/utb Knoxville, TN Joined October 2015

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UT Police @UTPolice

2 years ago

Our very own crime fighting K9 Bruno is a big fan of the snow! He also knows plenty of other K9s that will be watching for his snow pics! #PoliceK9

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Great 12-ish months for the UT bioinformatics lab! Owen Queen (far right) got a Goldwater and Ashley Babjac (far left) just accepted her NSF GFRP! One of 8 bio and other informatics awardees/HM in CS/IS/ENG. Others @ UCLA, Berkley, MIT, Cornell, Harvard, Stanford and Princeton

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Scott Emrich @ScottEmrich

4 years ago

First group picture in almost 2 years on the (entire) Weaving Rainbow Mountain mural next to the Third Creek greenway

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Scott Emrich @ScottEmrich

4 years ago

Excited (but honestly a bit scared) to see/smell this the next day or so

UTK EEB @UTK_EEB

4 years ago

Excited (but honestly a bit scared) to see/smell this the next day or so

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Scott Emrich @ScottEmrich

4 years ago

Great to see this work with Ian and co-led by @KButtonSimons get to the finish line!

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Joshua B Benoit @insectphysJBB

5 years ago

Stomoxys genome paper is finally out! Thanks to @AttardoGeoff @richmeisel @rmwaterhouse @emgen_science @wasp_venom @ScottEmrich and many other who helped! Big thanks to Pia Olafson who did most of the work! bmcbiol.biomedcentral.com/articles/10.11…

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Scott Emrich @ScottEmrich

5 years ago

First paper with a collaborator on the UT Ag Campus now available online; @UTKbioinform PhD candidate Katrina Schlum is the lead author: bit.ly/3vn9b1s

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Scott Emrich @ScottEmrich

4 years ago

Graduation weekend on Rocky Top! Congrats to my new PhDs Gabe (off to Asst. Prof @MSOE), Katrina (staff bioinformatician @CincyChildrens) and former PhD pre-move Dave (postdoc at @USDA_ARS in HI). In other good news, UTB undergrad Owen is a 2021 #GoldwaterScholarship recipient!

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Scott Emrich @ScottEmrich

4 years ago

Also completed Bt resistance allele surveillance of field-caught Spodoptera frugiperda (fall armyworm). We detected gene flow and known resistance alleles in Puerto Rico -- including variants found in Brazil -- as well as new candidate alleles. See: bit.ly/376xG7X

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Scott Emrich @ScottEmrich

4 years ago

One of my first UT projects is now in press. Using viral metagenomics on captured rodents across post-Katrina New Orleans, host identity (which animal captured) was the most informative and post hurricane management had no detectable effect(s). See: bit.ly/2VeflDe

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Dr. Tijana Milenkovic @ProfMilenkovic

5 years ago

Submit your paper to GLBIO 2021! In the past, GLBIO papers were published in PLOS Computational Biology and PLOS ONE. We are negotiating and expect to publish with PLOS again for GLBIO 2021.

ISCB News @iscb

5 years ago

Submit your paper to GLBIO 2021! In the past, GLBIO papers were published in PLOS Computational Biology and PLOS ONE. We are negotiating and expect to publish with PLOS again for GLBIO 2021.

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RJ Nowling @discretestates

5 years ago

Short paper from my summer work is out! "PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map." Thank you to my awesome collaborators for the opportunity to do some fun research! hereditasjournal.biomedcentral.com/articles/10.11…

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UTK bioinformatics @UTKbioinform

5 years ago

Work from our codon work funded by our NIH R01... great job Khalique et al. (Milenkovic, Emrich, Clark and Li groups)

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UTK bioinformatics @UTKbioinform

5 years ago

Took longer than usual but this work was published by RJ in PLos One in late 2020

RJ Nowling @discretestates

6 years ago

Took longer than usual but this work was published by RJ in PLos One in late 2020

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bioRxiv @biorxivpreprint

6 years ago

Surprising variation in the outcome of two malaria genetic crosses using humanized mice: implications for genetic mapping and malaria biology biorxiv.org/cgi/content/sh… #bioRxiv

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Scott Emrich @ScottEmrich

6 years ago

First paper from malaria genetics P01 online from rockstar postdocs Xue (Texas Biomed) and Sudhir (Seattle Children's): Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle: dx.plos.org/10.1371/journa…

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Rob Waterhouse also @rmwaterhouse.bsky.social @rmwaterhouse

7 years ago

Update to our #Anopheles 🦟 #genome 🧬 #assembly update paper. Superscaffolding = 🧬+🧬+🧬+🧬 biorxiv.org/content/10.110…

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VectorBase @VectorBase

7 years ago

Today @ScientificData paper from @VectorBase, @VectorBiTE_RCN, @GBIF, et al. (go.nature.com/2XMp9Rb) describing the minimum amount of information necessary to make arthropod abundance data reusable #FAIRprinciples #OpenData

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Alex Harkess @aeharkess

7 years ago

Teaching tomorrow, deciding to mix things up at last moment. We sequenced 4X cov of mini-maize on Wednesday. 12 ppl class, not much informatics. I'm thinking we touch the skim seq data....inspired by @ScottEmrich. Any suggestions? :) github.com/alexharkess/mi….