Alex Lederer @alexlederer19
PhD student @EPFL working at the interface of biology and computation. Single-cell genomics, transcriptional dynamics, development, and Python! linkedin.com/in/alexlederer Lausanne, Switzerland Joined September 2019-
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SIB Training Course 📣 Single-Cell Transcriptomics with Python 📷 27 - 29 May 2024 📷@alexlederer19 @geertvangeest and Tania Wyss in person, Bern #bioinformatics #training #SIB #Python #SingleCell @ISBSIB @SIBTraining Apply here:🚨 sib.swiss/training/cours…
Our latest preprint, @mukundkabbe's single-cell epigenomics (scATAC & Nano-Cut&Tag) of the adult human central nervous system, finding developmental epigenetic memory at HOX clusters in adult oligodendroglia! @karolinskainst biorxiv.org/content/10.110…
Have you been meaning to learn how to analyze your latest single-cell RNA seq experiment, but don't know where to start? Join us for "Single-Cell Transcriptomics" in Bern next month for a three day intro analysis course! It's the first time the SIB offers this course in Python!
Have you been meaning to learn how to analyze your latest single-cell RNA seq experiment, but don't know where to start? Join us for "Single-Cell Transcriptomics" in Bern next month for a three day intro analysis course! It's the first time the SIB offers this course in Python!
I’m proud & excited to share the first major preprint of my postdoc in @broz_lab, @unil. We systematically mapped interactions during bacterial-viral co-infection: doi.org/10.21203/rs.3.… Thanks to @EMBO, @FBM_UNIL, and all my colleagues at @DIB_UNIL & mentors for the support.
Excited to share Spotiflow, our new spot detection method for image-based spatial transcriptomics that facilitates the analysis of large iST images. Lead by @Albertdm99 jointly w @GioeleLaManno @epflSV @EPFL_Imaging @EPFL_BioE biorxiv.org/content/10.110… github.com/weigertlab/spo…
I'm so happy to share one of my main PhD works, just shortly before I submit my thesis! This project began in my early days as a PhD student and has evolved a lot since then. Thanks to the co-authors for their support and to the scientific community for feedback at conferences.
I'm so happy to share one of my main PhD works, just shortly before I submit my thesis! This project began in my early days as a PhD student and has evolved a lot since then. Thanks to the co-authors for their support and to the scientific community for feedback at conferences.
My inaugural lecture as an Assistant Professor @EPFL_en, @epflSV, @Brainmind_EPFL: a festive occasion to reflect on what we achieved as a team and where we are going. Thanks once again to all present and past lab members! youtu.be/AkJPmmubw_Y?si…
Congratulations to @Brainmind_EPFL professors Fides Zenk @EpiGN_Lab and Gioele La Manno @GioeleLaManno for being awarded prestigious @snsf_ch SNSF Starting Grants that provide funding for the next 5 years. We know you are going to do great things!
This week, our #SingleCell biology grantees gathered to share their research, connect with other research groups + discuss how they can use new data & technologies to understand health & disease. Attendees, what was your favorite part of the meeting?
I really enjoyed presenting my work on manifold-consistent RNA velocity inference at the annual #SCG2023 meeting this week in Engelberg! So many great discussions, and the single cell field is advancing as quickly as ever!
I had great fun organizing the 2nd EDCB PhD Symposium with @epfl_edcb @epflSV. We heard inspiring talks from across computational biology, including @TimonIdema from TU Delft! Thanks to my fellow student organizers and poster presenters for being such a lovely community!
It was a pleasure to attend the @BC2Conference these past days, first to teach a course on single-cell transcriptomics data analysis and second to share our ongoing work on RNA velocity. Honored to have received one of the poster prizes, too! Thank you @ISBSIB!
It was a pleasure to attend the @BC2Conference these past days, first to teach a course on single-cell transcriptomics data analysis and second to share our ongoing work on RNA velocity. Honored to have received one of the poster prizes, too! Thank you @ISBSIB!
It was a pleasure to host my sabbatical host @GioeleLaManno and @alexlederer19 at @RECOMBseq and @RECOMBconf.
Looking forward to presenting my work on RNA velocity here @RECOMBseq @RECOMBconf in beautiful Istanbul!
Looking forward to presenting my work on RNA velocity here @RECOMBseq @RECOMBconf in beautiful Istanbul!
Happy to announce #SCG2023! For the first time in the Swiss Alps! Exciting speakers! Website is up! Save-the-date: Registration opens May 2nd. weizmann.ac.il/conferences/SC… @IdoAmitLab, AmosTanay, @slinnarsson, @sandberglab, @AlexandervanOu1, @MarioniLab AvivRegev @genentech, @ETH_en
I'm excited to announce that I'll be co-teaching an introductory course on single-cell RNA sequencing analysis with Python at Basel Computational Biology Conference. If you want to learn the basics of scRNA-seq analysis, come join us in September!
I'm excited to announce that I'll be co-teaching an introductory course on single-cell RNA sequencing analysis with Python at Basel Computational Biology Conference. If you want to learn the basics of scRNA-seq analysis, come join us in September!
Grantees @GioeleLaManno, @lucapinello + Eli Bingham are furthering #SingleCell RNA Velocity analysis by developing 📌 Pyro-Velocity, a model that estimates the uncertainty of future cell states 📌 Pyro-Speed, a method for supervised statistical testing
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572 Followers 3K Following #GermCells #EpigeneticInheritance #Development #BrainOrganoids #EDC #Omics
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177 Followers 2K Following Studying Biomedical Engineering @Unibo, Alumni @NEDUETOfficial
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39 Followers 108 Following The focus of @Gio_Dangel0 Lab is to understand the role of membrane lipids in the establishment of cell identity and in development
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Pia Rautenstrauch @pia_rau
88 Followers 96 Following Computer Science PhD student at @HumboldtUni and @MDC_Berlin | Data Science | Machine learning | AI | Bioinformatics | Genomics | Single-cell biology
Mukund Kabbe @mukundkabbe
144 Followers 188 Following PhD student, Castelo-Branco Lab @ The Karolinska Institute | Neuroepigenetics, oligodendrocytes, and Formula 1
ACIDUL @ACIDUL_unil
248 Followers 25 Following ACIDUL fédère les membres du corps intermédiaire et les doctorant·e·s de l'Université de Lausanne. Elle défend leurs droits et leurs intérêts.
Faculté de biologie .. @FBM_UNIL
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4K Followers 1K Following Using genomics, organoids & computational tools to reconstruct tissues• ♥️ development & immunology @sangerinstitute https://t.co/JxU0F79O95 • diving & trekking passionateI am thrilled to announce that I passed my candidacy exam at EPFL. Many thanks to my amazing team @LCBL_EPFL for all the support and fantastic working environment and of course to my mentor @Gio_Dangel0 for great supervision and guidance.
Thrilled to celebrate @vinyard_m, a PhD student co-supervised by @gaddyg's lab, who successfully defended his thesis today. Congratulations, Dr. Vinyard! Special thanks to the examiners @brian_b_liau @JD_Buenrostro and everyone in the labs who contributed to this remarkable day!
SIB Training Course 📣 Single-Cell Transcriptomics with Python 📷 27 - 29 May 2024 📷@alexlederer19 @geertvangeest and Tania Wyss in person, Bern #bioinformatics #training #SIB #Python #SingleCell @ISBSIB @SIBTraining Apply here:🚨 sib.swiss/training/cours…
This is a great first step in reducing precarity and inequalities among PhD students. There is more to be done, and we will keep on working together to advance this further together with the @unil directorate, @Actionuni1 and all other stakeholders!
Cost-of-living adjustment: SNSF increases salary bands for staff working on its projects. The rise takes effect retroactively as of 1 January 2024. sohub.io/mbzv
Thanks a lot to @ADAS_Lausanne and @philipp_walch for the invitation to the D.Day'24. I had a great time sharing and discussing science with a great crowd of @unil PhD students !
Excited to share that my first first-author manuscript characterizing the H3K27ac and H3K27me3 histone landscape in adult human CNS tissue is now available @biorxivpreprint! biorxiv.org/content/10.110…
Our latest preprint, @mukundkabbe's single-cell epigenomics (scATAC & Nano-Cut&Tag) of the adult human central nervous system, finding developmental epigenetic memory at HOX clusters in adult oligodendroglia! @karolinskainst biorxiv.org/content/10.110…
Congratulations Philipp 👏 So glad you'll be representing mid-level staff researchers from @unil and other Swiss universities in this assembly, along with Rachel Démolis (also a member of ACIDUL's committee!) and @laure_piguet!
I feel honored to having been elected member of the newly constituted @snsf_ch Delegates Assembly! As part of my mandate, I want to represent @unil, @Actionuni1, as well as junior researchers overall to further strengthen the excellence of the Swiss research environment.
My first radio interview (in French) - super nice experience, as is the entire engagement at @ACIDUL_unil ❤️
Ravie d'avoir pu participer avec @philipp_walch à l'émission "La voix des assos" de Fréquence Banane à l'@unil ! Vous pouvez nous écouter ici ➡️ open.spotify.com/episode/4YgrEB… 😎
What a wonderful experience at the @EMBO Workshop in San Servolo, Venice. Great discussion following up on my talk there this morning! Thanks to the organizers for giving me the honor to present my work on co-infections: doi.org/10.21203/rs.3.… @DIB_UNIL @unil @FBM_UNIL
Amazing talk by @philipp_walch at the @EMBO workshop on Pathogen Immunity and Signaling - congratulations! For Philipp's full work, check out his preprint: doi.org/10.21203/rs.3.… @FBM_UNIL @DIB_UNIL
I feel honored to having been elected member of the newly constituted @snsf_ch Delegates Assembly! As part of my mandate, I want to represent @unil, @Actionuni1, as well as junior researchers overall to further strengthen the excellence of the Swiss research environment.
I am happy to share that I successfully passed my candidacy exam at EPFL. I am deeply greatful to @Gio_Dangel0 and the @LCBL_EPFL for the amazing support. I want to thank my jury, @AA_Lab_EPFL @alexpersat and @KnoblochLab for the invaluable discussion about my project.
New preprint from @philipp_walch and @broz_lab! researchsquare.com/article/rs-400…
Excited to share our latest preprint on mapping host-pathogen interactions during co-infection: doi.org/10.21203/rs.3.… Congratulations to @philipp_walch for spearheading such an ambitious project, encompassing both unbiased screening & mechanistic characterization. @DIB_UNIL
I’m proud & excited to share the first major preprint of my postdoc in @broz_lab, @unil. We systematically mapped interactions during bacterial-viral co-infection: doi.org/10.21203/rs.3.… Thanks to @EMBO, @FBM_UNIL, and all my colleagues at @DIB_UNIL & mentors for the support.
Excited to share our latest preprint on mapping host-pathogen interactions during co-infection: doi.org/10.21203/rs.3.… Congratulations to @philipp_walch for spearheading such an ambitious project, encompassing both unbiased screening & mechanistic characterization. @DIB_UNIL
Great news, @AlitheaGenomics !
Alithea Genomics Raises Additional CHF 2.8M in Seed Financing. The Swiss RNA analysis company will use the money raised to continue commercializing and expanding its RNA offerings as well as to establish a US subsidiary. ow.ly/rWmv105lXEH
@GioeleLaManno @alexlederer19 @bayraktar_lab @GrayCampLab Congratulations!
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