Cameron Soulette @csoulette
~~~ Bioinformatics, amateur photography & marathon runner ~~~ Daly City, CA Joined November 2019-
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Following61
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What a creative way to use @PacBio Iso-Seq to identify chitin genes in species w/out a genome. They used Cogent+SUPPA so they could see. alt splicing! mdpi.com/1660-3397/19/7…
Minimap2 v2.19 released with better and more contiguous alignment over long INDELs and in highly repetitive regions, improvements backported from unimap. These represent the most significant algorithmic change since v2.1. Use with caution. github.com/lh3/minimap2/r…
1/ I am super excited to share our recent work benchmarking short read sequencing performance across the Mtb genome. If you’re using Illumina WGS data to study M. tuberculosis, this work should be extremely useful to you. biorxiv.org/content/10.110…
Major comments - something the reviewer just needed clarification on. Minor comments - suggests to double your sequencing effort with alternative approach. 🤦♂️🤦♂️🤦♂️
This amazing @Magdoll , congrats!
Introducing MrHAMER, our @nanopore-based high accuracy viral sequencing platform that yields single-molecule reads to ≥99.9% accuracy. Truly a team effort at the @BruceTorbett and @AndrewRouth labs. A thread 🧵... biorxiv.org/content/10.110…
When you accidentally tell bioconductor to update all...
You know the perplexity is too low when...
Congrats Yulianna Ortega for being honored with the 2020 @ucsc Outstanding Staff Award!! Yuli is a passionate @stemdiv student advocate and mentor, working hard to bridge the diversity gap in science, engineering, and technology. sci.ucsc.edu/2P32IVt
At long last our RNA binding protein study has been published! Great collaboration with @yeo_lab @daSpliceIsRight Eric Lecuyer and Xiang-Dong Fu! nature.com/articles/s4158…
I forgot how amazing workflow managers can be when given the proper TLC #docker #singularity #snakemake #nextflow #ughazureblobs
Looks like a great dataset!!!
RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines biorxiv.org/content/10.110…
Probably the best news I’ve heard in 2020 so far!
Probably the best news I’ve heard in 2020 so far!
Our exploration & visualization tools for public #PCAWG data has been featured in the Genomes and Epigenomes Focus @NatureComms! Collaborative work with @icgc_dcc #ChromothripsisExplorer @ExpressionAtlas (@irenepapatheodo) & #PCAWG-Scout (@mikisvaz) #nciitcr
Our exploration & visualization tools for public #PCAWG data has been featured in the Genomes and Epigenomes Focus @NatureComms! Collaborative work with @icgc_dcc #ChromothripsisExplorer @ExpressionAtlas (@irenepapatheodo) & #PCAWG-Scout (@mikisvaz) #nciitcr
We're releasing the largest batch of annotations of AS event functions in @VastDB so far. We reached ~2200 entries! I honestly never expected there were so many articles experimentally assessing the functions of individual AS events! And we're not done yet! 😃 Please RT!
We're releasing the largest batch of annotations of AS event functions in @VastDB so far. We reached ~2200 entries! I honestly never expected there were so many articles experimentally assessing the functions of individual AS events! And we're not done yet! 😃 Please RT!
Excited to share our latest research which is a collaboration with @TheBrooksLab . This work was headed up by our incredible students @elektra_robi and @pratibhajagann_
Excited to share our latest research which is a collaboration with @TheBrooksLab . This work was headed up by our incredible students @elektra_robi and @pratibhajagann_
Co-chairing a consortium with the amazing @anaconesa and @calizavi! Looking forward to better understanding how long-read @PacBio and @nanopore technologies and analysis methods can contribute to higher quality transcriptomes.
Co-chairing a consortium with the amazing @anaconesa and @calizavi! Looking forward to better understanding how long-read @PacBio and @nanopore technologies and analysis methods can contribute to higher quality transcriptomes.
Alright I’m gonna try to explain astigmatism, because this is an extreme example of what you might see at night if you have it.
Seerear @SeerearPGs3wjW
35 Followers 3K Following
Lilian Marchand @LilianMarchand2
14 Followers 73 Following PhD student in the bioinformatic team Bonsai, Lille. Research topics : De novo identification of alternative transcript using long-read.
Neil Ward @GenomicsUK
961 Followers 963 Following Improving the health of the planet with genomics. VP and General Manager for PacBio EMEA.
Daniel Portik @DPortik
2K Followers 3K Following Bioinformatics scientist @PacBio. I work on metagenomics, methylation, and assembly, but also enjoy phylogenomics and frog/lizard evolution. 🦠 🐸 🦎 🧬
Billy 🌹 @nothingclever
1K Followers 2K Following he/him. Geneticist & 1x programmer. Bioinformatics Scientist. I'm not here. @williamrowell.dev on bsky; @[email protected]; @[email protected]
Michele Ramos Correa @mramoscorrea
48 Followers 164 Following PhD Candidate @KeckMedUSC | 2020 @NSFGRFP | She/Her
Haron kiprugut Bor �... @BorKiprugut
603 Followers 5K Following Elite Athlete specializing in marathon and Ultra running.
Gene Yeo’s Lab at U... @yeo_lab
5K Followers 363 Following Gene Yeo's Lab: RNA regulation, technologies, disease models and therapeutics
Veronica Urabe @VUrabe
30 Followers 91 Following
Harry Soulette @Super1510man
5 Followers 42 Following
Yulianna Ortega @_YuliOrtega
214 Followers 453 Following STEM Diversity programs director @UCSC•she/her•values mentoring, diversity, equity and inclusion•first gen•loves:💃🏽⚽️ 👨👩👧👧 🐕 🏃🏽♀️ 🌲
SFSU PINC @sfsupinc
177 Followers 413 Following PINC (Promoting Inclusivity in Computing) is a program at SFSU that aims to gives an opportunity to non-CS majors to earn a Minor in Computing Applications!
Atesh Worthington @ateshw
170 Followers 236 Following Ph.D. student studying blood stem cells • Turkish-American • NHLBI Predoctoral Fellow • Passionate about pedagogy and improving STEM graduate training• she/her
Sangram K Sahu @sangram_ksahu
745 Followers 2K Following Bioinformatics solution architect | Helping understand Genomics data one base pair at a time
Manuel Irimia @mirimiam
2K Followers 1K Following ICREA Evolutionary Biologist working on transcriptomics of development and evolution at @UPFbiomed and @CRGenomica. Coordinator of the @EvoMG_Bcn Joint Program.
Maxime U Garcia | @ga... @gau
1K Followers 4K Following Bioinfomagician/PhD in Bioinformatics, developing @nextflowio @nf_core pipelines at @SeqeraLabs Tweets and RTs in English/French - He/him
Pratibha Jagannatha @pratibhajagann_
61 Followers 70 Following PhD student @UCSD | RNA + Compbio | Venture @Vida_Ventures | Shower thoughts only 🌧
Jason Fernandes @jdf_ev
716 Followers 2K Following Head of Epigenetic Engineering @scribetx Views are my own. PhD: Overlapping genes w/ Alan Frankel (UCSF) Postdoc: KZNFs w/ David Haussler (UCSC/HHMI)
Darrin Schultz @conchoecia
1K Followers 478 Following Postdoc at U Vienna; formerly MBARI & UC Santa Cruz. Bioinformatics💻/Genomics 🧬. I like marine inverts + bioluminescence ✨. 日本語でもいい https://t.co/629bQPcouK
Eva Robinson @EvaRobinson16
74 Followers 353 Following
Jess Davies @jldavies16
290 Followers 539 Following Science is just awesome 🤓🙌. All opinions are my own, except the previous - which is clearly a fact. Once a scientist, always a scientist! She/her/they.
Olivia Willes @olivia_willes
583 Followers 2K Following
Eric Martin @eric_w_martin
128 Followers 223 Following Postdoc in the labs of @abbybuch and @ASadylab @UCSF. fmr PhD student in the @Forsberg_Lab @ucsc. All about stem cells/epigenetics/genome organization. he/him
Alexandra Kahn 🦠�... @alexzebra321
87 Followers 325 Following Postdoc @ESPM_Berkeley researching plant pathogen evolution & ceramicist
Michael Vinyard @vinyard_m
754 Followers 3K Following Deep neural networks and dynamical modeling of biology PhD @Harvard
Elektra Robinson @elektra_robi
120 Followers 323 Following
RiboHippie @areINayeDude
111 Followers 221 Following Sam Fagg — Assistant Professor at UTMB Galveston; RNA biology, regenerative med — he/him — lover of surfing, music, skiing, and fishing in no particular order
Holly Beale #BlackLiv... @hollybeale
256 Followers 798 Following Staff scientist at🌲UCSC, passionate about pediatric cancer genomics, social justice, and 🐕 genomics. She/her/hers.
Julia Philipp (3/3) @its_JPhilipp
239 Followers 323 Following Data Scientist @EMBL & @GHGA_DE || one of the tweeps @CodedesLebens || dev @bioctools || @UCSC Alum || Computational Biologist || first gen || she/her
Carmelle Catamura (sh... @carmelebythesea
106 Followers 263 Following Pinay computational biologist 🌺 / Cebuana in California / PhD candidate @CCBBerkeley / @ucscbme alum / first gen
Graham Larue @egrahamlarue
168 Followers 511 Following PhD | bioinformatics, molecular evolution | Black lives matter. LGBTQ+ lives matter. (he/him) | @[email protected]
Sergio Covarrubias @crisprscientist
93 Followers 125 Following Molecular Immunologist using CRISPR high-throughput screening methods to study long noncoding RNAs involved in inflammation
UC Santa Cruz Genomic... @ucscgenomics
6K Followers 4K Following Unlocking the world's genomic data to accelerate medical and scientific breakthroughs. We're also on 🐘 and 🧵! @UCSCgenomics
Alana Weinstein @alanasweinstein
492 Followers 2K Following Former: staff scientist @UCSF, prostate cancer genomics. Still: bioinformatics PhD candidate @ucscgenomics. Always: @BowdoinCollege alum. Views my own.
Maximillian Marin @maxgmarin
563 Followers 2K Following Researcher studying genomics and infectious disease at Harvard Medical School.
Daniel Kim @ProfDanielKim
4K Followers 5K Following Assistant Professor @BaskinEng @UCSC | Associate Member @CanaryCenter @Stanford | Research Scholar @AmericanCancer | Chair, Media & Communications @RNASociety
Baskin Engineering at... @BaskinEng
3K Followers 1K Following Elevating the world through bold and socially responsible innovation. #BaskinEngineering
Roman E. Reggiardo @ReggiardoRoman
171 Followers 428 Following PhD | F99 | Daniel Kim @ UCSC PostDoc | K00 | Howard Chang @ Stanford RNA, Technology Development, Computation
Brooks Lab @TheBrooksLab
787 Followers 56 Following The Brooks Lab @UCSC | Department of Biomolecular Engineering | We study #DNA and #RNA sequencing data to fight #cancer
Donna Poscablo @DPoscablo
421 Followers 533 Following Postdoc @Stanford studying aging hematopoiesis and cardiovascular biology | Filipina, Hawaii-raised | AHA & HHMI Gilliam alumn
UCSC STEM Diversity @stemdiv
463 Followers 431 Following The STEM Diversity Office aims to shape students science identity by providing hands-on research experience, professional development, and a community of peers.
Ali @alisondtang
195 Followers 105 Following Bioinformatics graduate student at UCSC, interested in all genomics! She/her
Alexis Thornton @AlexisThornton_
509 Followers 499 Following Bioinformatics Scientist @GRAILbio | PhD from @TheBrooksLab @ucscbme | @UF Alum 🐊 | She/Her | #BLACKandSTEM
Rob Almanza @papaROBzi
1K Followers 961 Following 📍ATL + MIA | ♎️ Made in Nicaragua 🇳🇮 | Dog Dad | Food is my Love Language
Veronica Urabe @VUrabe
30 Followers 91 Following
Harry Soulette @Super1510man
5 Followers 42 Following
Yulianna Ortega @_YuliOrtega
214 Followers 453 Following STEM Diversity programs director @UCSC•she/her•values mentoring, diversity, equity and inclusion•first gen•loves:💃🏽⚽️ 👨👩👧👧 🐕 🏃🏽♀️ 🌲
Atesh Worthington @ateshw
170 Followers 236 Following Ph.D. student studying blood stem cells • Turkish-American • NHLBI Predoctoral Fellow • Passionate about pedagogy and improving STEM graduate training• she/her
Burge Lab @daSpliceIsRight
2K Followers 56 Following We study gene expression & RNA processing (RBPs, splicing, transcription) using experimental and computational methods at @MITBiology!
Gene Yeo’s Lab at U... @yeo_lab
5K Followers 363 Following Gene Yeo's Lab: RNA regulation, technologies, disease models and therapeutics
Graveley Lab @GraveleyLab
4K Followers 1K Following Chair and Professor of Genetics and Genome Sciences at UConn Health. We study RNA biology and CRISPR systems using biochemistry, genomics, and bioinformatics.
Lior Pachter @lpachter
47K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Jason Rasgon @vectorgen
8K Followers 2K Following I'm done here on Twitter. Meet me at the Blue Place. Same username.
Pratibha Jagannatha @pratibhajagann_
61 Followers 70 Following PhD student @UCSD | RNA + Compbio | Venture @Vida_Ventures | Shower thoughts only 🌧
Jason Fernandes @jdf_ev
716 Followers 2K Following Head of Epigenetic Engineering @scribetx Views are my own. PhD: Overlapping genes w/ Alan Frankel (UCSF) Postdoc: KZNFs w/ David Haussler (UCSC/HHMI)
Aaron Quinlan @aaronquinlan
17K Followers 1K Following All things genome mutation, software for genomic discovery. Chairperson of @UUGenetics Co-director, DELPHI Data Science Init (he/him) https://t.co/6GKjALLFfk
GencodeGenes @GencodeGenes
1K Followers 267 Following Human And Vertebrate Analysis aNd Annotation (HAVANA) team, part of the Ensembl group at the European Bioinformatics Institute.
Darrin Schultz @conchoecia
1K Followers 478 Following Postdoc at U Vienna; formerly MBARI & UC Santa Cruz. Bioinformatics💻/Genomics 🧬. I like marine inverts + bioluminescence ✨. 日本語でもいい https://t.co/629bQPcouK
San Francisco Zoo & G... @sfzoo
40K Followers 3K Following The mission of San Francisco Zoo is to connect all people with wildlife, inspire caring for nature and advance conservation action.
Alexandra Kahn 🦠�... @alexzebra321
87 Followers 325 Following Postdoc @ESPM_Berkeley researching plant pathogen evolution & ceramicist
Eric Martin @eric_w_martin
128 Followers 223 Following Postdoc in the labs of @abbybuch and @ASadylab @UCSF. fmr PhD student in the @Forsberg_Lab @ucsc. All about stem cells/epigenetics/genome organization. he/him
Manuel Irimia @mirimiam
2K Followers 1K Following ICREA Evolutionary Biologist working on transcriptomics of development and evolution at @UPFbiomed and @CRGenomica. Coordinator of the @EvoMG_Bcn Joint Program.
Michael Vinyard @vinyard_m
754 Followers 3K Following Deep neural networks and dynamical modeling of biology PhD @Harvard
Elektra Robinson @elektra_robi
120 Followers 323 Following
Brian O'Connor @boconnor
228 Followers 198 Following Owner of Nimbus Informatics which focuses on bioinformatics cloud infrastructure development and interoperability.
EEB_POC @EEB_POC
3K Followers 1 Following Papers by Authors of Color - research published by Black, Indigenous, and people of color scientists in the fields of Ecology, Evolution, & Behavior
Carmelle Catamura (sh... @carmelebythesea
106 Followers 263 Following Pinay computational biologist 🌺 / Cebuana in California / PhD candidate @CCBBerkeley / @ucscbme alum / first gen
Graham Larue @egrahamlarue
168 Followers 511 Following PhD | bioinformatics, molecular evolution | Black lives matter. LGBTQ+ lives matter. (he/him) | @[email protected]
Jonathan Göke @JonathanGoeke
2K Followers 519 Following Group Leader, Genome Institute of Singapore. Working on computational methods for long read RNA-Seq. The team tweets from @goekelab
bioRxiv @biorxivpreprint
137K Followers 23 Following Daily summaries of preprints posted in each bioRxiv Subject Area. Find ways to get social media alerts to individual papers at https://t.co/wrlEW1phDV
Winston Timp @timp0
1K Followers 519 Following
Concerned bioinformat... @wetlabsucks
4K Followers 293 Following Bioinformatics memes for genes and proteins
CarpenterLab @LabCarpenter
1K Followers 278 Following The Carpenter lab is interested in determining the role for long noncoding RNA (lncRNAs) in the immune system.
Ana Fiszbein @anafiszbein
2K Followers 461 Following Molecular and computational biologist. Assistant Professor @BU_Biology & @BU_CDS. Argentinian
AnaConesa @anaconesa
4K Followers 376 Following Computational biologist and developer of bioinfo tools for the [email protected]
Liz Tseng @Magdoll
4K Followers 1K Following Applications product manager @PacBio. #RNA/#GeneTherapy/#bioinformatics. @uwcse PhD. she/her. Aerialist/pole dancer. Opinions are my own.
Heng Li @lh3lh3
11K Followers 224 Following Associate professor of biomedical informatics at @HarvardDBMI and @dfcidatascience
Eva Robinson @EvaRobinson16
74 Followers 353 Following
Maximillian Marin @maxgmarin
563 Followers 2K Following Researcher studying genomics and infectious disease at Harvard Medical School.
Roman E. Reggiardo @ReggiardoRoman
171 Followers 428 Following PhD | F99 | Daniel Kim @ UCSC PostDoc | K00 | Howard Chang @ Stanford RNA, Technology Development, Computation
Daniel Kim @ProfDanielKim
4K Followers 5K Following Assistant Professor @BaskinEng @UCSC | Associate Member @CanaryCenter @Stanford | Research Scholar @AmericanCancer | Chair, Media & Communications @RNASociety
Baskin Engineering at... @BaskinEng
3K Followers 1K Following Elevating the world through bold and socially responsible innovation. #BaskinEngineering
Sergio Covarrubias @crisprscientist
93 Followers 125 Following Molecular Immunologist using CRISPR high-throughput screening methods to study long noncoding RNAs involved in inflammation
Jess Davies @jldavies16
290 Followers 539 Following Science is just awesome 🤓🙌. All opinions are my own, except the previous - which is clearly a fact. Once a scientist, always a scientist! She/her/they.
Daniel Garalde @daniel_garalde
117 Followers 74 Following
PacBio @PacBio
45K Followers 3K Following Our mission is to enable the promise of #genomics to better human health by creating the world’s most advanced #sequencing technologies. #PacBio
Oxford Nanopore @nanopore
66K Followers 9K Following 🌍Direct DNA/RNA analysis for anyone, anywhere 🧬Short to ultra-long reads in real-time for rapid insights 🔬Products for research use only
PHD Comics @PHDcomics
323K Followers 79 Following Life (or the lack thereof) in Academia. Comic strip by Jorge Cham. https://t.co/cMwdi1UHdd
Rob Almanza @papaROBzi
1K Followers 961 Following 📍ATL + MIA | ♎️ Made in Nicaragua 🇳🇮 | Dog Dad | Food is my Love LanguageTrends for United States
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