Xiaoguang Xue @cygx1xue
Structural immunology • Opinions are my own Utrecht, The Netherlands Joined April 2015-
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Xiaoguang Xue retweeted
New features available now on our protein GenAI platform DiffuseSandbox! scFv design with DSG2-mini is now live. We’ve also made open-source models RFAntibody + pMPNN available. diffusesandbox.com 1/
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Xiaoguang Xue retweeted
Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibody–viral glycoprotein complexes nature.com/articles/s4155…
Xiaoguang Xue retweeted
悲观者永远正确，乐观者永远前行！ 其实，你一直在寻找的奇迹就隐藏在你一直逃避的行动里...
Xiaoguang Xue retweeted
Excited to be giving this webinar soon. Hope to see you then!
Xiaoguang Xue retweeted
Today marks the beginning of OpenRxiv, which replaces bioRxiv and medRxiv, the world's largest preprint platform for life and medical science @openrxiv
Xiaoguang Xue retweeted
Biotech is far too political and entrenched in managerial culture - a combination of its influence and overlap with academic biology, the speed/expense of trying new ideas and who controls the money. Startup executives and founders often sit on the board of many companies,…
Xiaoguang Xue retweeted
Tools such as Rosetta and AlphaFold have redefined the protein-engineering landscape. But some problems remain out of reach — for now go.nature.com/3YT7zgN
Xiaoguang Xue retweeted
One bacterial protein as a complement to #Matrigel/#BME: The #integrin -binding domain of the Yersinia bacterial protein Invasin, coated as a single protein, maintains a defined long-term culture of various epithelial cells as “2D #organoid sheets”. biorxiv.org/content/10.110…
Xiaoguang Xue retweeted
@pranamanam You might find this ‘old’ paper interesting cell.com/cell/pdf/S0092…
Xiaoguang Xue retweeted
A beautiful thread from @rohitsingh8080!! 🧵 It really captures my feelings/frustration about current "trends" in protein design. As Rohit mentioned, the aftermath of sequencing the human genome has been a huge huge disappointment. Genomics has really not lived up to the hype,…
A beautiful thread from @rohitsingh8080!! 🧵 It really captures my feelings/frustration about current "trends" in protein design. As Rohit mentioned, the aftermath of sequencing the human genome has been a huge huge disappointment. Genomics has really not lived up to the hype,…
Xiaoguang Xue retweeted
Let me tell you a story. It'll end up at the current tech-bio and protein design scene. But the story starts about 25 years earlier. Did you know that, commercially, the human genome project precipitated the end and not the start of a genomics boom? 1/
Xiaoguang Xue retweeted
o1-preview is decent at protein folding, roughly matching ESMFold. not great, still room for improvement, but cool nonetheless. funny that OpenAI refuses to pay for pymol and is running the trial version
Xiaoguang Xue retweeted
Massive sampling strategy for antibody-antigen targets in CAPRI Round 55 with MassiveFold - This paper presents a massive sampling strategy using the AlphaFold2-based tool, MassiveFold, for predicting antibody-antigen targets in the CAPRI Round 55 competition. Over 6,000…
Xiaoguang Xue retweeted
FlexAttention is a game-changer! 🔥 I was revisiting the Longformer paper, and I decided to implement its attention patterns using FlexAttention. Tested it out and it’s faster than F.sdpa/xFormers with masking and even FlashAttention-2 (full/causal) for both the forward and…
Xiaoguang Xue retweeted
"Mindless molecules" are making a comeback! 🚀 We’ve launched a fresh SotA Python implementation inspired by the original 2009 paper. In our minds, essential molecule data points for building truly transferable SQM or MLFF models! 🔬📊 github.com/grimme-lab/Min…
Xiaoguang Xue retweeted
Another group has more or less reproduced AF3, but has built in a way to add spatial constraints for PPI prediction. These constraints lead to huge increases in fraction of models that are correct-ish, without changing fraction that is high-accuracy chaiassets.com/chai-1/paper/t…
Xiaoguang Xue retweeted
Diffold, which uses AF2 fine-tuned w diffusion to sample multiple protein conformations, got renamed to UFConf and performs about as well as AlphaFlow and much better than AF-cluster, MSA subsampling, etc biorxiv.org/content/10.110…
Xiaoguang Xue retweeted
We’re presenting AlphaProteo: an AI system for designing novel proteins that bind more successfully to target molecules. 🧬 It could help scientists better understand how biological systems function, save time in research, advance drug design and more. 🧵 dpmd.ai/3XuMqbX
Xiaoguang Xue retweeted
🚀Excited to announce: Open-source AlphaFold3 implementation! 🚀 I am thrilled to announce one of the models we have been building for the last 8-weeks at Ligo - an open-source implementation of DeepMind’s frontier model, AlphaFold3! Here’s what we have learned, a thread (1/11):
Xiaoguang Xue retweeted
1/ I did my own little hackathon last weekend designing EGFR binders for @adaptyvbio's protein design competition. I was really excited to see that my submissions took the top 10 spots in the virtual scoring phase! I got some DMs asking about my process so here's a thread:
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Charlie Marsh @charliermarsh
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howie.serious @howie_serious
45K Followers 305 Following purity of thought. be exactly who you are : just a serious man. 思想纯净，做好自己：严肃对待自己的兴趣，不要浮皮潦草。 公众号：howie和小能熊 youtube：https://t.co/J1aSMKnUFo
完颜空 @wanyankong39318
146 Followers 854 Following 👨⚕️301 physician 10years➕Tencent6｜1擅长医疗数据 | 医疗ML&LLMs |
Emma Hesketh @HeskethEmma
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凡人小北 @frxiaobei
17K Followers 299 Following 行道途中。非求速成，惟求通达。 2023 年扎进AI ，打通Know-How，不少赚钱项目，踩过坑，也见过光。 围城里待得够久了，出来聊聊世界，聊聊技术、聊聊赚钱。
Genki Terashi @GTerashi
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Vivek Natarajan @vivnat
9K Followers 387 Following Advancing science and medicine with AI @GoogleDeepMind | Previously @facebookai Research | Definite Optimist
Nicholas Runcie @NicholasRuncie
270 Followers 242 Following AI for Drug discovery | Oxford DPhil student @OPIGlets | Opinions my own
José D. Camino @JoseD_Camino
464 Followers 1K Following Postdoctoral researcher at @fz_juelich, interested in amyloid aggregation processes and the study of their structures by cryo-EM
Kyle Tretina, Ph.D. @AllThingsApx
4K Followers 474 Following Follow for AI in Digital Biology and Drug Discovery @NVIDIA, ex Insilico Medicine, ex Yale, PhD UMaryland, views are mine, DM for collabs
Cankay Koryak @CankayKoryak
3K Followers 3K Following Radiologist by training, thinker by nature. Mapping memory, time, consciousness, cancer, and Alzheimer’s— Complexity is the most beautiful thing.
Yufan Sheng @amehochan
28K Followers 877 Following #INTP @ApacheFlink の貢献者。Java、Go、Scala、Kotlin、JavaScript、Python、その他6つのプログラム言語でコーディング。読書が唯一の娯楽。
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