Fabian Theis @fabian_theis
Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc helmholtz-munich.de/en/icb/pi/fabi… Munich, Bavaria Joined March 2010-
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Great motivator to head into the weekend: Our donor deconvolution pipeline 'hadge' is out in Genome Biology! genomebiology.biomedcentral.com/articles/10.11… This Nextflow pipeline combines 12 hashing and genotype based deconvolution methods to also enable a novel joint deconvolution strategy
🔊🔊PODCAST alert🔊🔊 Inspiring deep-dive how #computation #AI will transform disease classification, heterogeneity, genetic cause, new treatments+needed education concepts! Highly recommended (surely biased😅) 🙏🙏🙏@MihaelaVDS @fabian_theis @fpcasale open.spotify.com/show/5tiWyc9zr…
One framework to rule them all: SpatialData 🔳 Excited to see our efforts in unifying and integrating multimodal spatial omics data highlighted by @embl. Phenomenal teamwork with @fabian_theis and @notjustmoore and more! 💪 Published in @naturemethods: nature.com/articles/s4159……
One framework to rule them all: SpatialData 🔳 Excited to see our efforts in unifying and integrating multimodal spatial omics data highlighted by @embl. Phenomenal teamwork with @fabian_theis and @notjustmoore and more! 💪 Published in @naturemethods: nature.com/articles/s4159……
Helmholtz invests 23 million in research on AI foundation models helmholtz.de/en/newsroom/ar… #HFMI @fz_juelich @AWI_Media @KITKarlsruhe @HereonHelmholtz @DKFZ @DZNE_en @MDC_Berlin @HZBde @GFZ_Potsdam @HZDR_Dresden @UFZ_de @DLR_en @HelmholtzMunich
1/n Happy to finally share our Nicheformer preprint, this was a huge lab effort - special thanks to @AnnaCSchaar and @fabian_theis for making this possible!
1/n Happy to finally share our Nicheformer preprint, this was a huge lab effort - special thanks to @AnnaCSchaar and @fabian_theis for making this possible!
1/n Interested in large-scale foundation models for single-cell and spatial transcriptomics data and curious about using them to enrich your dissociated dataset with spatial context? Happy to share our preprint “Nicheformer: a foundation model for single-cell and spatial omics”.
1/n Interested in large-scale foundation models for single-cell and spatial transcriptomics data and curious about using them to enrich your dissociated dataset with spatial context? Happy to share our preprint “Nicheformer: a foundation model for single-cell and spatial omics”.
Guy Wolf @Mila_Quebec visiting @HelmholtzMunich as @AvHStiftung fellow to work with us and @Pseudomanifold lab on manifold learning. Starting with fun talk on geometry and diffusions.
Nicheformer: a foundation model for single-cell and spatial omics biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
Exciting news for the Python Single-Cell Community! Save the date for the first scverse conference in Munich from September 10-12. Inspiring talks, interactive workshops, and networking opportunities. Stay tuned for the registrations, speaker announcements, and more! #scverse2024
Interested in joining the lab? Together with @JoLSchultze lab @DZNE_de Bonn we are looking for a postdoc to develop AI-based representations of flow and multi-omics data and apply them in a diagnostic setting across multiple hospitals. More info & apply: jobs.helmholtz-muenchen.de/jobposting/471…
Final conference program #BioEng24 May 6/7 2024 @HelmholtzMunich Our program👇includes ✅globally leading scientists #bioengineering #biomedical_AI #biomedicine ✅12 abstract selected short-talks🎇 ✅30+ Poster presentations👍 +relevant journal editors helmholtz-munich.de/en/bioengineer…
Single-cell omics is ever changing. I am using a longitudinal pediatric AML dataset (n = 75) to cover some of these recent updates to the field in a multi-part tutorial series that will cover scRNA and scATAC. Part one covers preprocessing. 🧵 (1/3) youtu.be/cmOlCTGX4Ik?si…
Excited to introduce DinoBloom🦖🌺, an open-source foundation model family (Vit-S to G) for general cell embeddings in #hematology🩸 Trained w mod. #DINOv2 on 13 datasets w 380,000+ WBC images of blood & bonemarrow. Evaluated on AML subtype & cell classification (knn, lin probe)
#Health #Foundation #Models: our 2024 #Symposium just kicked off at @HelmholtzMunich! @fabian_theis @MarrCarsten @ewa_szczurek @jnkath Special thanks to @MathieuSeyfrid for bringing it all together!
Ming "Tommy" Tang @tangming2005
30K Followers 2K Following Director of computational biology. On my way to helping 1 million people learn bioinformatics. Educator, Biotech, single cell. Also talks about leadership.
Itai Yanai 💔 @ItaiYanai
24K Followers 2K Following Professor at the NYU School of Medicine. Co-host of the 'Night Science Podcast' https://t.co/Sy1rcWXGLz @nightsciencepod
Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Anshul Kundaje (anshu.. @anshulkundaje
22K Followers 2K Following Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU). Post: @anshulkundaje, Threads: anshulkundaje
dana_peer @dana_peer
13K Followers 164 Following
Arjun Raj @arjunrajlab
25K Followers 2K Following Just another LLM. Tweets do not necessarily reflect the views of people in my lab or even my own views last week. https://t.co/fZAnUCqd12
Michael Love @mikelove
18K Followers 5K Following I'm not on twitter anymore, find my on Bluesky or Mastodon
Mo Lotfollahi @mo_lotfollahi
7K Followers 1K Following I train neural networks and dogs to do cool things! ML for biology and drug discovery| Faculty @sangerinstitute.
Manolis Kellis @manoliskellis
25K Followers 4K Following Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Helmholtz Munich | @H.. @HelmholtzMunich
9K Followers 2K Following German Research Center for Environmental Health We discover breakthrough solutions for better health in a changing world! https://t.co/DEY3BbGXvu
Luciano Martelotto �.. @LGMartelotto
10K Followers 954 Following Sc/St-Omics pro-aficionado. Knowledge sharing is my thing. Views, opinions and comments are my own and do not represent those of my employer. Like/RT ≠ endorse
Wolfgang Huber 🇺�.. @wolfgangkhuber
10K Followers 1K Following Scientist working on statistical methods and applications in biology. Find me at @wkhuber.bsky.social @[email protected] Слава Україні
Simona Cristea @simocristea
7K Followers 495 Following Head of Data Science at Hale Center for Pancreatic Cancer | Group leader @DanaFarber @Harvard | We ❤️ genomics, evolution & LLMs | PhD @eth | 🇷🇴🇸🇪🇨🇭🇺🇸
Dan Landau @landau_lab
9K Followers 2K Following Cancer genomics, epigenomics and evolutionary dynamics (Weill Cornell/New York Genome Center). Hemato-oncologist (NYP). Discl.: https://t.co/tAu87FMVW3
Matthias Mann Lab @labs_mann
13K Followers 94 Following The Mann Lab is a pioneer in mass spectrometry-based proteomics. Tweets represent personal views from lab members and Matthias Mann @MPI_Biochem and @UCPH_CPR.
Rahul Satija @satijalab
28K Followers 380 Following Core Member, New York Genome Center; Associate Professor, Biology, NYU
Computational Health .. @CompHealthMuc
3K Followers 102 Following Comp scientists 👩🏽💻🧑🏻💻who are passionate about developing novel tools ⚒️ powered by AI💡to accelerate discovery & translation💪🏼 https://t.co/s36zCIjnr4
Rong Fan @RongFan8
9K Followers 1K Following Harold Hodgkinson Professor of Biomedical Engineering and Pathology, Yale University https://t.co/kLH8WPg2c2 https://t.co/kbDKoBh9Ak https://t.co/MduFkomdDj
Jian Ma @jmuiuc
7K Followers 1K Following Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science @CMUCompBio @SCSatCMU @CarnegieMellon
Idoia Mujika Altuna @MujikaAltuna
206 Followers 3K Following
Jawad Alaa Edeen @jawadalaaedeen
11 Followers 15 Following 🇱🇧 | Computational Biology & Data Science
xueer @xueer1533779
0 Followers 5 Following
James @basedsystems
36 Followers 86 Following
Laura Rueda @laruedag
31 Followers 133 Following Doctoral researcher at the German Cancer Research Center (DKFZ)
Manuel Lubetzki @MLubetzki
31 Followers 77 Following
Lion7575 @Lion75751
61 Followers 308 Following
Amir Malekpour @AmirMalekpour4
0 Followers 19 Following
Zehao Zhang @Tommyz626
73 Followers 152 Following Graduate fellow @junyue_cao's lab @RockefellerUniv Studying aging biology and genomics
thiombiano parfait @thiombianoparf2
71 Followers 359 Following
A drifter @Screolll
222 Followers 6K Following
Michelle von Locqueng.. @MVLocquenghien
72 Followers 246 Following PhD Candidate @idoamitlab @weizmannscience. Research expertise from @MIT @WhiteheadInst, @NKI_nl, @HMar_research, @RWTH & @NorthwesternU. From Germany 🇩🇪
Dan @danieldconger
507 Followers 1K Following enzo, @ycombinator, early @PodiumHQ, late @wendys | 1st grade spelling bee champion
F.Sancho @Sanchificator
168 Followers 1K Following
effie klimi @roboticparts
3K Followers 572 Following I like RNA, vascular biology, learning and the planet Saturn 🪐 @EdinburghUni PhD
Francisco LePort @leportfr
224 Followers 163 Following creating time for all of us by curing age related diseases
Tanu Saroha @TanuSaroha
24 Followers 154 Following Senior Research Fellow, Microbial genomics and evolution lab CSIR-IMTECH
Diyaa Ashour @diyaazak
64 Followers 156 Following Immunologist with a deep interest in the cardio-immune crosstalk
elon_musk @Elonmusk14269
330 Followers 177 Following
Michael Passalacqua @NomadicScience
245 Followers 730 Following Cold Spring Harbor PhD student with a focus on plant gene coexpression and single cell. Cooks a lot and passionate about food, hiking, and board games 🇵🇷
God’s Own @I_am_Amofa
131 Followers 720 Following | Software Engineer | Cancer Research Enthusiast & Bioinformatician | Wakanda 🤘🏼|God is REAL🫱🏼🫲🏽|
Henry @Enrique56862666
262 Followers 868 Following
Ying @Yzyz2yz
1 Followers 23 Following
Anne Goupil @anne_goupil
704 Followers 2K Following Protein Modeling, Drug design, Precision Medicine...
Chris White @MucosalMelanoma
300 Followers 1K Following Mucosal Melanoma Survivor, LLC. Rare Cancer Thriver, and Advocate. Self-Published Author, Inspirational Speaker, and JuicePlus+ Affiliate
pang @PattamapornPan9
3 Followers 2K Following
summer boutris @BoutrisSummer
5 Followers 155 Following
Serena Tagliente @Sere_neuropsi
36 Followers 655 Following Research Fellow, Neuropsychologist 🧠 Istituti Clinici Scientifici Maugeri IRCCS | Fondazione Maugeri MSc
Jeevitha C M @jeevitha_cm
17 Followers 453 Following "Diving into the science of life! 🧬 Meet the #Genetics_Girl, exploring the fascinating world of DNA, RNA, and Protein. Join my journey! #Research #Scientist"
Matiss @matissozols92
9 Followers 102 Following
Cemal Mete HAYIRLI @CMHayirli
37K Followers 40K Following Siber Suçlar Kriminalisti - Siber Savunma - Adli Bilişim - Veri Kurtarma, İmha Etme, Yedekleme - Penetrasyon Testi - DDos Testi - Güvenli Hosting
d5b @d5b
99 Followers 3K Following *If you don't have a seat at the table, you are probably on the menu * Elizabeth Warren
Araf Sompod @ZihadiAl
2 Followers 82 Following Explorar Genetic Engineer Jashore University of Science and Technology
Yin-Hong Cao @caoyinhong
122 Followers 1K Following Postdoc in Jiayang Li Lab, Institute of Genetics and Developmental Biology, CAS. Focus on the Multi-omics of dandelions & rice🌱🌾Recruiting Top-Tier Talents👇
José Faria @josemmfaria
13 Followers 260 Following 📍Lisboa, Portugal • Biomedical Engineering - ISEL 🎓 • Petrolhead
Yayan Feng @FengYayan55
5 Followers 81 Following
e z @erinz2253
18 Followers 196 Following
Victor Ogbolu @VictorOgbolu_
2 Followers 42 Following Neuroscientist, MS candidate, studying tau pathology in organoids and assembloids
Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Anshul Kundaje (anshu.. @anshulkundaje
22K Followers 2K Following Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU). Post: @anshulkundaje, Threads: anshulkundaje
dana_peer @dana_peer
13K Followers 164 Following
Arjun Raj @arjunrajlab
25K Followers 2K Following Just another LLM. Tweets do not necessarily reflect the views of people in my lab or even my own views last week. https://t.co/fZAnUCqd12
Mo Lotfollahi @mo_lotfollahi
7K Followers 1K Following I train neural networks and dogs to do cool things! ML for biology and drug discovery| Faculty @sangerinstitute.
Manolis Kellis @manoliskellis
25K Followers 4K Following Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
bioRxiv Bioinfo @biorxiv_bioinfo
15K Followers 0 Following
Helmholtz Munich | @H.. @HelmholtzMunich
9K Followers 2K Following German Research Center for Environmental Health We discover breakthrough solutions for better health in a changing world! https://t.co/DEY3BbGXvu
Wolfgang Huber 🇺�.. @wolfgangkhuber
10K Followers 1K Following Scientist working on statistical methods and applications in biology. Find me at @wkhuber.bsky.social @[email protected] Слава Україні
Matthias Mann Lab @labs_mann
13K Followers 94 Following The Mann Lab is a pioneer in mass spectrometry-based proteomics. Tweets represent personal views from lab members and Matthias Mann @MPI_Biochem and @UCPH_CPR.
Rahul Satija @satijalab
28K Followers 380 Following Core Member, New York Genome Center; Associate Professor, Biology, NYU
Computational Health .. @CompHealthMuc
3K Followers 102 Following Comp scientists 👩🏽💻🧑🏻💻who are passionate about developing novel tools ⚒️ powered by AI💡to accelerate discovery & translation💪🏼 https://t.co/s36zCIjnr4
Human Cell Atlas @humancellatlas
19K Followers 544 Following MISSION To create comprehensive reference maps of all human cells as a basis for both understanding human health and diagnosing, monitoring and treating disease
Saez-Rodriguez Group @saezlab
5K Followers 628 Following Account of the Saez-Rodriguez lab at Heidelberg University Lab members tweet about our news, activities & publications
Karsten Borgwardt @kmborgwardt
4K Followers 739 Following Director @MPI_Biochem, #MachineLearning and #SystemsBiology, honorary professor @LMU_Muenchen
Helmholtz Munich PhD .. @Health_talents
2K Followers 879 Following We attract, train and support passionate early-career scientists @HelmholtzMunich for outstanding careers in research & beyond. Impressum: https://t.co/Ywz31VgMpN
Helmholtz AI @helmholtz_ai
4K Followers 287 Following Helmholtz Artificial Intelligence Cooperation Unit Research-driven hub for applied #AI & #ML Democratising AI across @helmholtz_en
Jay Shendure @JShendure
14K Followers 332 Following Genomics technology developer. Developmental biology adult learner. Professor at @uwgenome @HHMINEWS @BrotmanBaty. He/him.
roser @roserventotormo
4K Followers 1K Following Using genomics, organoids & computational tools to reconstruct tissues• ♥️ development & immunology @sangerinstitute https://t.co/JxU0F79O95 • diving & trekking passionate
Daniel Lab @DanielLabMunich
631 Followers 500 Following PI @helmholtz_diabc @HelmholtzMunich @DiabResearch | Professor of Immune Modulation @LMU_Muenchen | Co-Speaker @TRR_355 | Former @harvardmed @Harvard
Alejandro Tejada Lapu.. @Alejandro__TL
186 Followers 362 Following @ELLISforEurope PhD Student in @fabian_theis lab. Interested in Machine Learning and biology.
Gray Camp @GrayCampLab
3K Followers 523 Following Curiosity. Organoids. EvoDevo. QuantBio. Translation. Institute of Human Biology. Basel.
Haniffa Lab @HaniffaLab
958 Followers 156 Following Based @sangerinstitute & @UniofNewcastle. We apply disruptive techniques to understand how the immune system develops and maintains health. PI @Muzz_Haniffa
Bo Wang @BoWang87
8K Followers 2K Following Assistant Prof. CS,LMP @UofT; CIFAR AI Chair @VectorInst; Chief AI Scientist, @UHN; former PHD, CS @Stanford; opinions my own. #AI #healthcare #combio
Gary Bader @garybader1
2K Followers 68 Following Professor, University of Toronto https://t.co/oJeDcaLoGD
Sara Jiménez @sarajimenezc
366 Followers 899 Following Postdoc in computational biology @HelmholtzMunich | @CompHealthMuc. Interested in pancreatic endocrine cells. ☕️ ,🍫 and 🏃♀️enthusiast.
ISCB News @iscb
8K Followers 31 Following ISCB is a scholarly society for advancing understanding of living systems through computation and for communicating scientific advances worldwide.
Zeynep Akata @zeynepakata
6K Followers 272 Following Professor of Computer Science at @TU_Muenchen and Director @Helmholtz_Munich, @ELLISforEurope Fellow
Alexander Stark @AlexanderStark8
3K Followers 491 Following
Dominik Klein @Dominik1Klein
257 Followers 154 Following @EllisforEurope PhD student, Student Researcher @Apple. Previously MSc @OxfordStats. Interested in Machine Learning, Single-Cell Genomics, and People.
Steffen Schneider @stes_io
979 Followers 945 Following Dynamical Inference @HelmholtzMunich. 🦓@CebraAI. Co-Founder @KImachtSchule & @KinematikAI. ➡️ Hiring PhD students & SWEs!
Jean-Philippe Vert @jeanphi_vert
1K Followers 53 Following
Max Welling @wellingmax
32K Followers 429 Following
Dean Burnett (@Garwbo.. @garwboy
44K Followers 3K Following Neuroscientist writer/humourist. Author of 'The Idiot Brain' and 'Emotional Ignorance' (published 12-01-23) https://t.co/T16cUfHN1d
Gunnar Rätsch @gxr
3K Followers 447 Following I love large biomedical data. Mastodon @[email protected]
Joachim Hornegger @Hornegger
4K Followers 110 Following President of Germany's most innovative university @UniFAU #FAU #1innovator #1engineering, inFAUtainer
Research in Bavaria @researchbavaria
4K Followers 1K Following We feature stories & news on pioneering research as well as funding and job opportunities at Bavarian universities🥨 🇩🇪 👉https://t.co/0bK6446CM1
@[email protected].. @smolix
21K Followers 121 Following AutoML with https://t.co/xqkK2q7L02 - learn ML with https://t.co/9W8dBWESkW - join us at https://t.co/uY2XbWTgaT
Stephen Quake @StephenQuake
4K Followers 334 Following Head of Science @chanzuckerberg | Professor of #bioengineering and Applied Physics @stanford | Prolific #inventor focused on nexus of #biology, #physics + #tech
Maike Sander & Lab @msanderlab
2K Followers 125 Following Max Delbrück Center for Molecular Medicine, Berlin and Sanford Consortium for Regenerative Medicine, San Diego
Francesca Finotello @Francesca_Fin_
1K Followers 2K Following Assist. Prof. leading the Computational Biomedicine Group at @uniinnsbruck • Data scientist at @DiSC_uibk: precision medicine and cancer immunotherapy • Mother
Markus Söder @Markus_Soeder
478K Followers 273 Following Offizieller Twitter-Kanal von Markus Söder, Bayerischer Ministerpräsident und @csu-Vorsitzender
Theodore S. Kapellos @KapellosTS
704 Followers 730 Following Junior group leader @HelmholtzMunich with an interest in lung immunology and myeloid cells #humanimmunology #COPD #bronchiectasis #transcriptomics #microbiomics
DFG public | @dfg_pub.. @dfg_public
43K Followers 1K Following Hier twittert die Presse- und Öffentlichkeitsarbeit der Deutschen Forschungsgemeinschaft. Impressum: https://t.co/F2eI7tFVKW…
Omer Ali Bayraktar @bayraktar_lab
3K Followers 674 Following Group leader at @sangerinstitute Neural diversity, spatial transcriptomics, glia, GBM https://t.co/AGAGRUasuI…
Bertie Gottgens @BertieGottgens
501 Followers 74 Following Blood Stem Cell Researcher at the University of Cambridge
Mackenzie Mathis, PhD @TrackingActions
20K Followers 12 Following Scientist merging adaptive motor control & machine learning | 🐭@deeplabcut 🦓@cebraAI | @ELLISforEurope Scholar | (same @ on bluesky)
Ulrike Protzer @UlrikeProtzer
4K Followers 60 Following Viren besser verstehen - um den Kampf gegen Viruserkrankungen zu gewinnen; Viruses - driven to better understand them and dedicated to fight viral diseases
Jan Engelmann @janxengelmann
157 Followers 443 Following 👋 @EllisforEurope PhD student in DL for single-cell genomics 🧬 with @fabian_theis & @fpcasale & @jmtomczak
Christopher Lance @lance_runstats
102 Followers 137 Following
Muzlifah Haniffa @Muzz_Haniffa
3K Followers 387 Following Clinician #scientist passionate about #immunobiology & #genomics. Mother, mentor, food enthusiast & film buff!
Schultze Lab @LabSchultze
3K Followers 2K Following Our lab @DZNE_en studies immunology,metabolism&neuroscience using single-cell omics&bioinformatics; connected to https://t.co/uAZMpbPQNZ @UniBonn & @LIMES_Bonn
Joachim L. Schultze @JoLSchultze
294 Followers 190 Following Innovator, Immunologist, Genomics Expert, Swarm Learner, @DZNE_en; @LIMES_Bonn; @UniBonn
Sören Becker @SorenBecker
98 Followers 183 Following
Leon Hetzel @leon_het
409 Followers 243 Following 👨💻PhD student at TUM and Helmholtz Munich, Generative Modelling, Graphs, Applications in single-cell and drug discovery
Romain Lopez @_romain_lopez_
1K Followers 207 Following Postdoctoral Scholar @ Genentech & Stanford Genetics. Machine Learning in Biology.
CIIRC ČVUT @CIIRCCTU
888 Followers 212 Following By creating fusions of research disciplines, CIIRC CTU turns ideas into breakthrough technologies for industry, energetics, health and society.
ETH AI Center @ETH_AI_Center
3K Followers 300 Following Welcome to the ETH AI Center! We are @ETH 's central hub leading the way towards trustworthy, accessible and inclusive #artificialintelligence
Anna Schaar @AnnaCSchaar
577 Followers 384 Following PhD student @icbmunich @TUM_Mathematics; Community Manager at @scverse
Sergio Marco @sergiomarco96
182 Followers 184 Following Geneticist, Bioinformatician. PhD Student at @MatsNilssonLab Cofounder of @spatialistbio
Louis Kuemmerle @KuemmerleLouis
279 Followers 558 Following PhD student in computational biology in the labs of @fabian_theis and @erturklab
Wellcome Sanger Insti.. @sangerinstitute
74K Followers 2K Following We are a world leader in genomics research. We apply and explore genomic technologies to advance the understanding of biology and improve health 🧬
Ahmed Mahfouz @ahmedElkoussy
2K Followers 4K Following Computational biologist | associate professor @LUMC | affiliated faculty @TUDelft | member @YALeiden
Mihaela van der Schaa.. @MihaelaVDS
8K Followers 420 Following John Humphrey Plummer Professor of Machine Learning, Artificial Intelligence and Medicine @Cambridge_Uni, Fellow @TuringInst
Evan Biederstedt @EBiederstedt
849 Followers 637 Following https://t.co/7CdTaHfVvY | Single-cell genomics, genome graphs, algorithm development | @broadinstitute @harvardmed
Christoph Bock Lab @ .. @BockLab
2K Followers 1K Following Technology-driven biomedical research at CeMM Research Center for Molecular Medicine & MedUni Vienna #cancer #immunology #bioinformatics #AI #singlecell #CRISPR
Berlin Institute of H.. @berlinnovation
8K Followers 1K Following We are founded by @MDC_Berlin & @ChariteBerlin. Tweets on #TranslationalMedicine, #DigitalHealth & #Innovation. mastodon: @[email protected]
Roland Eils @CaptainSysBio
1K Followers 186 Following Devoted to Digital Health and Systems Medicine - tweets reflect my private thoughts
Our @ElaSauerborn is an invited @nanopore panelists at #ECCMID2024 #ESCMID2024 @ESCMID together with @jonathanCIDR @AaronPomerantz; what a star and fantastic PhD student @TU_Muenchen! Chat w Ela at tomorrow's reception & with the rest of our group at London Calling #nanoporeconf!
I'm very grateful to our team, especially Fabiola Curion and Xichen Wu, who co-led this study with me. It really was a team effort and a pleasure.
Also, hadge is fast! Nextflow's parallelization really helps. We're currently porting our pipeline to @nf_core and plan to support it in the future as well.
Our joint deconvolution strategy concatenates hashing and genotype deconvolution which allowed us to rescue previously discarded cells in a nuclei hashing of frozen brain tissue.
We performed extensive benchmarking on the most widely used methods that we also support with hadge. Genotype deconvolution methods are generally in broad agreement and work well, but hashing based methods vary strongly in performance.
Great motivator to head into the weekend: Our donor deconvolution pipeline 'hadge' is out in Genome Biology! genomebiology.biomedcentral.com/articles/10.11… This Nextflow pipeline combines 12 hashing and genotype based deconvolution methods to also enable a novel joint deconvolution strategy
⚠️For PhDs who are thinking about jumping ship and diving into industry: Industry isn't necessarily better than academia. I have straddled both worlds. Here are 5 MYTHS about academia vs. industry:
Congratulations to Melis, Nike and Tobi for a well deserved DZD Award @TobiasGreisle @Melisakguncanan
🌟Glückwunsch an die herausragenden Nachwuchsforschenden, die einen der DZD Awards gewonnen haben! Mehr zu ihren beeindruckenden Leistungen und Forschung zeigen unsere Videoporträts auf dzd-ev.de. #Diabetes #Diabetesforschung #EarlyCareerScientists"🎉
I guess I’m one of the few who actually enjoys teaching. Not only do I feel that some knowledge needs to be revisited and refreshed, but preparing lectures also reminds me of the nice old days when I first learned them, feeling as if those wonderful times are not so far away.
👏 Congratulations to our CEO Prof. @MatthiasTschop for being elected among six new honorary doctorates at @Stockholm_Uni 2024! 👇Read more about Prof. Matthias Tschöp's #research on "Reversing Obesity with Multi-Receptor Drugs" in our #interview: 🗞️t1p.de/yqsok
We are happy to announce six new honorary doctorates at Stockholm University 2024, all of whom have contributed in distinctive ways to the University’s activities in research and education. Read more about their work: bit.ly/new-honorary-d…
🏆Outstanding Young Investigator Award goes to six researchers from #HelmholtzMunich! The German Center for Diabetes Research (DZD @DiabResearch) honors young researchers at the beginning of their careers with a DZD Award. 👉Get to know the winners: t1p.de/ay71q
📢New #podcast from our #HelmholtzMunich experts @fabian_theis & Paolo Casale. Both discuss how #ArtificialIntelligence & #MachineLearning are changing #biology & #medicine. 🎙️Biomedical #AI: from data to meaning t1p.de/3r97s 👉All podcasts: t1p.de/344qy
🔊🔊PODCAST alert🔊🔊 Inspiring deep-dive how #computation #AI will transform disease classification, heterogeneity, genetic cause, new treatments+needed education concepts! Highly recommended (surely biased😅) 🙏🙏🙏@MihaelaVDS @fabian_theis @fpcasale open.spotify.com/show/5tiWyc9zr…
🔊🔊PODCAST alert🔊🔊 Inspiring deep-dive how #computation #AI will transform disease classification, heterogeneity, genetic cause, new treatments+needed education concepts! Highly recommended (surely biased😅) 🙏🙏🙏@MihaelaVDS @fabian_theis @fpcasale open.spotify.com/show/5tiWyc9zr…
So nice to see this work published! A Yap activator for in vivo and in vitro!
Congratulations to @ClaraEvaB, @priscaliberali and all other authors involved in this story! This Cpd will be extremely useful for studying the Hippo-pathway and YAP signaling!
SpatialData is a tool developed by EMBL scientists in cooperation with multiple research institutions to unify & integrate data from different omics technologies. It provides holistic insights into health & disease and is publicly accessible. embl.org/news/science-t…
One framework to rule them all: SpatialData 🔳 Excited to see our efforts in unifying and integrating multimodal spatial omics data highlighted by @embl. Phenomenal teamwork with @fabian_theis and @notjustmoore and more! 💪 Published in @naturemethods: nature.com/articles/s4159……
SpatialData is a tool developed by EMBL scientists in cooperation with multiple research institutions to unify & integrate data from different omics technologies. It provides holistic insights into health & disease and is publicly accessible. embl.org/news/science-t…
Very excited to share that our DELiVR method is now open access published @naturemethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s4159… by @Dorie00 @Rami96614090 @moritz_negwer
A warm welcome from @CompHealthMuc to @mrguywolf from @UMontreal and @Mila, who received prestigeous @AvHStiftungand + Carl Friedrich von Siemens fellowships to visit and work with @Pseudomanifold and @fabian_theis!
My mind is blown. @GroqInc is serving LLaMA 3 at over 800 tokens per second! 800. Tokens. Per. Second. This unlocks so many incredible use-cases. It's one thing to see my demo — it's another thing entirely to experience it for yourself. Do yourself a favor and try it asap.
After 3 years, it's time for us to start sharing the chapters of the GDL book! ❤️ Also included: companion slides from our @Cambridge_Uni & @UniofOxford courses 🧑🎓 Chapter 1 is out **now**! More to follow soon 🎉 geometricdeeplearning.com/book 📖 @mmbronstein @joanbruna @TacoCohen
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