Janelia Fly EM @janeliaflyem
Follow for the latest info on the Janelia Fly EM project. Fly EM is a research team @HHMIJanelia that extracts and analyzes neural connections in the fly brain. janelia.org/team-project/f… Janelia Research Campus Joined February 2015-
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🪄 You can now search this amazing new dataset from @HHMIJanelia for connectivity motifs. Try it in Neuprint. 🧵 ➡️ neuprint.janelia.org/?dataset=manc%…
🪄 You can now search this amazing new dataset from @HHMIJanelia for connectivity motifs. Try it in Neuprint. 🧵 ➡️ neuprint.janelia.org/?dataset=manc%… https://t.co/iwxGgmGbLe
Delighted that @flyconnectome group @CamZoology (and local collaborators @MRC_LMB) could play their part in finishing this major new #drosophila #connectome supported by @wellcometrust. Tweeprints coming soon, but links to data, tools and papers already at janelia.org/project-team/f…
Delighted that @flyconnectome group @CamZoology (and local collaborators @MRC_LMB) could play their part in finishing this major new #drosophila #connectome supported by @wellcometrust. Tweeprints coming soon, but links to data, tools and papers already at janelia.org/project-team/f…
Congratulations to our very own Gwyneth Card and @HHMIJanelia colleagues for this achievement!
Congratulations to our very own Gwyneth Card and @HHMIJanelia colleagues for this achievement!
🔥 Today, researchers unveiled the connectome of the male adult fruit fly nerve cord. 🧠 With about 23K neurons, 10 million pre-synaptic sites & 74 million post-synaptic densities, it’s the most in-depth & complete wiring diagram of a fly nerve cord. 🔗janelia.org/news/janelia-s…
Minor update to the hemibrain dataset on neuprint.janelia.org: Today we released hemibrain-v1.2.1. No updates to the connectome, but synapse-to-mito distances have been recomputed with improved accuracy. Release notes here: docs.google.com/document/d/1va…
We are experimenting with new ways to make EM data like the #hemibrain accessible for data discovery to complement neuPrint. clio.janelia.org (with neuroglancer) contains an image search app, an atlas of interesting EM phenomenon, and some annotation tools @janeliaflyem.
@janeliaflyem and @garybhuang paper introducing an unsupervised deep learning strategy to explore large EM volmes (arxiv.org/abs/2012.12175). Potential applications: clustering, object classification, and image search. Initial public version of image search for #hemibrain soon
happy to announce v1.2 release of the #hemibrain before the new year .. now with mitochondria predictions (around 6 million!) and available through "neuPrint+" neuprint.janelia.org. @janeliaflyem @stardazed0 youtu.be/RrKQ14pOqm4
Join @janeliaflyem for a live #hemibrain public discussion on zoom today in a couple hours 11AM-1PM EST (hhmi.zoom.us/j/94083683709). Lots of interesting topics (geared toward data users) plus a preview of some new results!
FlyEM @janeliaflyem is hosting a live public discussion on the #hemibrain and our latest release this June 30th 11AM-1PM ET (zoom link TBA here on the day). Please come with questions/comments. No formal agenda but we can discuss different parts of the data and future plans.
Lou Scheffer wrote a nice distillation of graph properties from the #hemibrain here: biorxiv.org/content/10.110…
Latest blog entry about how to make large connectomes: janelia.org/project-team/f…
Our new pre-print is out (@janeliaflyem @stardazed0 @michalj ), now with more detailed explanations of methods and various system-level analyses made possible by having a dense, large-scale connectome biorxiv.org/content/10.110…
Calling all #connectome and #neuron lovers! You probably saw the big @janeliaflyem hemibrain data and the launch of the neuprint.janelia.org. Now explore neuPrint custom queries in virtual reality with the FREE @syGlassVR View tool: syglass.io/view 🤩🧪🔬🥳🎉
It took both remarkable human and artificial intelligence to construct the most detailed map of a #brain to date biorxiv.org/content/10.110… a herculean effort! @HHMIJanelia @GoogleAI @stardazed0 @michalj @stephenplaza @janeliaflyem economist.com/science-and-te… @TheEconomist
Proud to introduce @janeliaflyem "hemibrain" #hemibrain: a connectome of the Drosophila central brain. biorxiv.org/content/10.110…. @stardazed0 @michalj Please see overview website: janelia.org/project-team/f… Play with data on neuPrint: neuprint.janelia.org
How you organize and store your data has a profound impact on your applications ... read about how we manage connectomics data janelia.org/project-team/f… @wtkatz
I just announced at cold spring harbor #cshldros that @janeliaflyem and Google (@stardazed0 @michalj ) will release the hemibrain connectome (#hemibrain) on January 22!
here are a few thoughts on the importance of building and organizing a team with many great collaborators when doing large-scale science efforts @janeliaflyem @herrsaalfeld @stardazed0 : janelia.org/project-team/f…
Lou Scheffer has a nice ("journey to a connectome") blog entry discussing comparative connectomics and some experiences from @janeliaflyem : janelia.org/project-team/f…
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such gorgeous data! tinyurl.com/53uw3fcn
🔥 Today, researchers unveiled the connectome of the male adult fruit fly nerve cord. 🧠 With about 23K neurons, 10 million pre-synaptic sites & 74 million post-synaptic densities, it’s the most in-depth & complete wiring diagram of a fly nerve cord. 🔗janelia.org/news/janelia-s…
@HHMIJanelia The MANC connectome is now also available on BrainCircuits.io: braincircuits.io/app?p=fruitfly…
🪄 You can now search this amazing new dataset from @HHMIJanelia for connectivity motifs. Try it in Neuprint. 🧵 ➡️ neuprint.janelia.org/?dataset=manc%…
🔥 Today, researchers unveiled the connectome of the male adult fruit fly nerve cord. 🧠 With about 23K neurons, 10 million pre-synaptic sites & 74 million post-synaptic densities, it’s the most in-depth & complete wiring diagram of a fly nerve cord. 🔗janelia.org/news/janelia-s…
Huge thanks to @neomorphic, Stuart Berg, Lowell Umayam from @janeliaflyem, and Jinhan Choi, @dstevewei, @simonwarchol from @HarvardVCG @BostonCollege for making Vimo accessible for MANC.
Delighted that @flyconnectome group @CamZoology (and local collaborators @MRC_LMB) could play their part in finishing this major new #drosophila #connectome supported by @wellcometrust. Tweeprints coming soon, but links to data, tools and papers already at janelia.org/project-team/f…
🔥 Today, researchers unveiled the connectome of the male adult fruit fly nerve cord. 🧠 With about 23K neurons, 10 million pre-synaptic sites & 74 million post-synaptic densities, it’s the most in-depth & complete wiring diagram of a fly nerve cord. 🔗janelia.org/news/janelia-s…
Team here includes Elizabeth Marin @EichlerKathi @TStuerner Billy Morris Andrew Champion @MarinaGkantia @dokatox Griffin Badalamente Chris Dunne Philipp Schlegel @paul_brooks @martamcosta2 and VNC guru @DavidShepherdNW. Real pleasure working w Stuart Berg and @janeliaflyem team
Congratulations to our very own Gwyneth Card and @HHMIJanelia colleagues for this achievement!
🔥 Today, researchers unveiled the connectome of the male adult fruit fly nerve cord. 🧠 With about 23K neurons, 10 million pre-synaptic sites & 74 million post-synaptic densities, it’s the most in-depth & complete wiring diagram of a fly nerve cord. 🔗janelia.org/news/janelia-s…
We are experimenting with new ways to make EM data like the #hemibrain accessible for data discovery to complement neuPrint. clio.janelia.org (with neuroglancer) contains an image search app, an atlas of interesting EM phenomenon, and some annotation tools @janeliaflyem.
@janeliaflyem and @garybhuang paper introducing an unsupervised deep learning strategy to explore large EM volmes (arxiv.org/abs/2012.12175). Potential applications: clustering, object classification, and image search. Initial public version of image search for #hemibrain soon
happy to announce v1.2 release of the #hemibrain before the new year .. now with mitochondria predictions (around 6 million!) and available through "neuPrint+" neuprint.janelia.org. @janeliaflyem @stardazed0 youtu.be/RrKQ14pOqm4
neuPrint+ is compatible with neuPrint but extends the data model for exploring both inter and intra-cellular interactions. See neuprint.janelia.org for the documented data model additions. We added some support for mitochondria data analysis in the web app and python API.
We aim to submit a paper in the next month analyzing the mitochondria in the hemibrain. This will provide more information about how to consume this data.
Thanks to Jeremy for enhancing neuroglancer (…ain-dot-neuroglancer-demo.appspot.com/#!gs://flyem-v…) to allow for beautiful visualization of mitochondria within a neuron.
Join @janeliaflyem for a live #hemibrain public discussion on zoom today in a couple hours 11AM-1PM EST (hhmi.zoom.us/j/94083683709). Lots of interesting topics (geared toward data users) plus a preview of some new results!
FlyEM @janeliaflyem is hosting a live public discussion on the #hemibrain and our latest release this June 30th 11AM-1PM ET (zoom link TBA here on the day). Please come with questions/comments. No formal agenda but we can discuss different parts of the data and future plans.
Latest blog entry about how to make large connectomes: janelia.org/project-team/f…
Specific papers focusing on the mushroom body and central complex will hopefully be out in a few weeks.
also in a couple months we will have a v1.1 connectome released with more finalized neuron naming conventions and other small reconstruction fixes
Our new pre-print is out (@janeliaflyem @stardazed0 @michalj ), now with more detailed explanations of methods and various system-level analyses made possible by having a dense, large-scale connectome biorxiv.org/content/10.110…
Calling all #connectome and #neuron lovers! You probably saw the big @janeliaflyem hemibrain data and the launch of the neuprint.janelia.org. Now explore neuPrint custom queries in virtual reality with the FREE @syGlassVR View tool: syglass.io/view 🤩🧪🔬🥳🎉
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