Joshua Shapiro @jashapiro
not 'Eureka!' but 'That's funny...' https://t.co/CDaptBBfvG https://t.co/km0pxmOYlR ccdatalab.org Wynnewood, PA Joined January 2008-
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Interested in analyzing the ScPCA data? We just launched the OpenScPCA project! Find out more at openscpca.readthedocs.io. Next month, we're offering a workshop on reproducible research practices and how to contribute to OpenScPCA. Learn more!⬇️ ccdatalab.org/blog/data-lab-…
The preprint for the #SingleCell #PediatricCancer Atlas (ScPCA) is now available!🎉 Originally comprised of data from 10 projects funded by @AlexsLemonade, the ScPCA Portal now has 518 samples from 51 cancer types and continues to grow. Read about ScPCA! biorxiv.org/content/10.110…
🚨The Data Lab has launched a brand new project!🚨 The Open #SingleCell #PediatricCancer Atlas (OpenScPCA) is an open effort to collaboratively analyze data from the ScPCA Portal. Read about it in our latest blog post! ccdatalab.org/blog/introduci…
Our department is recruiting new faculty! I can't emphasize enough how supportive both the department and the scientific community are. Feel free to DM me if you have any questions.
Our department is recruiting new faculty! I can't emphasize enough how supportive both the department and the scientific community are. Feel free to DM me if you have any questions.
Mariana Wolfner and I seek an enthusiastic postdoc to work on an NIH-funded project to dissect the molecular basis for male-female interactions during and after mating. Join the exciting Drosophila research community at Cornell. Email [email protected].
Won't you be my neighbor? Bryn Mawr Biology is hiring a tenure-track neurobiologist! Come join a thriving Bi-College Neuroscience Community - exceptional students, great location (Philly!), beautiful campus, amazing colleagues! brynmawr.edu/inside/academi…
I'm excited to announce that my lab is moving to Johns Hopkins University in @HopkinsBio and @HopkinsCMDB grad program this fall! We are hiring at all levels, including grad students, technicians, postdocs, programmers, and staff scientists. Please DM me if you are interested!
📢New guest blog post! Our collaborator @jolynnerokita from the Center for Data-Driven Discovery in Biomedicine (D3b) at @CHOP_Research discusses the experience of co-leading the global #OpenScience initiative, the Open Pediatric #BrainTumor Atlas with the Data Lab. 🧵
“The instructors were always willing to help and there were ample opportunities to ask questions.” Build skills in a supportive learning environment at a future #SingleCell #RNASeq or Reproducible Research Practices workshop! Join our mailing list >> bit.ly/3eQZXGQ
Naches
We are deeply saddened by the loss of Michael Ashburner, a pioneering co-founder and former Head of Research at EMBL-EBI. His contributions to bioinformatics have been immeasurable. Our thoughts are with his family, colleagues and all those whose lives were enriched by his work.
The author wants to convince us "social interventions have surprisingly modest effects”. Yet today nearly everyone can write their name. As this & many other obvious egs illustrate, social interventions have had huge effects on the mean/variance of social traits across years. 7/n
What I’ve found in my dabbling (and it is very compelling…I’ve had to fight to keep myself out of it) is that the argument becomes the product I’m selling, not a conversation or a quest for truth. Extending the argument forever becomes in both parties best interests. The only…
1/2 Do you have pediatric cancer single-cell data that you want to make openly available? Interested to learn how you may be able to receive a small one-time grant for sharing your data on our #SingleCell #PediatricCancer Atlas (ScPCA) Portal? Keep reading! 🧵
Have questions about contributing your single-cell data to the #SingleCell #PediatricCancer Atlas Portal? We are holding open office hours on Zoom tomorrow! Save the link below and join us beginning at 3pm eastern tomorrow, 6/2. Join the session! >> bit.ly/3OOawug
I just want to note that when I read "Geneformer", Snow's "Informer" immediately starts playing in my head. As far as I know, the lyrics exactly match this application.
I just want to note that when I read "Geneformer", Snow's "Informer" immediately starts playing in my head. As far as I know, the lyrics exactly match this application.
Imagine someone made a tumor atlas, but the entire process was done in the open (analysis, manuscript authoring, etc) -> that's what this is. Don't miss the GitHub, which is remarkable! #BrainTumor #bioinformatics #genomics #raredisease
Imagine someone made a tumor atlas, but the entire process was done in the open (analysis, manuscript authoring, etc) -> that's what this is. Don't miss the GitHub, which is remarkable! #BrainTumor #bioinformatics #genomics #raredisease
I think this version name means that I will have to standardize on this version of R from June 16 forward. (Also, I think I may have affected one of the changes in this release)
I think this version name means that I will have to standardize on this version of R from June 16 forward. (Also, I think I may have affected one of the changes in this release)
In collaboration with the Center for Data-Driven Discovery in Biomedicine (D3b) at @CHOP_Research, @CBTNetwork, @PNOC_kids and more, we developed the Open Pediatric #BrainTumor Atlas (OpenPBTA). We’re excited to share that this work was published today! cell.com/cell-genomics/…
Harmit S. Malik @HarmitMalik
44K Followers 8K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/himVince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data SkillsMichael Eisen @mbeisen
77K Followers 15K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/bZ7I9oSJe0.Clement Chow @ClementYChow
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686 Followers 4K Following PhD student #glasgow university #UoG_transpharm #GPCRS #FreeFattyAcidReceptors #pharmacology #Biochemistry #Libra #Egyptian🇪🇬❤️ #Muslim #EmeraldaMichell Pasceri @michel_pasce
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6 Followers 622 FollowingMengcun Gao @MengcunG
14 Followers 72 Following Graduate student at the OSU interested in development of categorization, exploration, attention, and memoryWay-of-Work.com @wayofworkhub
1K Followers 5K Following Tech-savvy recruitment agency blending AI & personal touch to match top talent. Pioneering the future of industry & remote work. #WayOfWork" 🚀🤖🌍Adam Poliak @azpoliak
1K Followers 1K Following Assistant Professor @BrynMawrCollege | PhD from @jhucompsci & @jhuclspEvomicsLab @EvomicsLab
165 Followers 300 Following Exploring Omics in the Light of Evolution PI: @iAmphioxusDaniel Cooney @DanielCooney1
2K Followers 4K Following Applied mathematician at @UofIllinois interested in evolutionary game theory, differential equations, and modeling biological and social systems.Victor Cazares, Ph.D. @VicCazares
559 Followers 1K Following Asst. Prof of Neuro @ Williams College | #RISE #NSP #BRAINS #IRACDA | 🚵🏽♂️ | ⛰️🐕🦺🥾 | ☕ | 🏀 | 🌶️❤️🔥 | 🇲🇽🇺🇲 | https://t.co/ORoxBluAXhHarmit S. Malik @HarmitMalik
44K Followers 8K Following Study genetic conflicts professionally. Try to avoid conflicts in personal life (with mixed results). @HutchBasicSci @fredhutch @HHMINEWS He/himVince Buffalo @vsbuffalo
15K Followers 2K Following Evolutionary genetics postdoc @UCBerkeley ♥s biology, running, probability+statistics, 🦀, fly fishing, backpacking. Author of book Bioinformatics Data SkillsMichael Eisen @mbeisen
77K Followers 15K Following I science & try to make science open. Tweets do not represent my employer's views, but are always correct. My conflicts of interest https://t.co/bZ7I9oSJe0.Clement Chow @ClementYChow
17K Followers 5K Following henfluencer - geriatric millennial - #stopasianhate - don’t call me Clem - emotional eater™️- he/him- @chowlabLior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatterGraham Coop @Graham_Coop
20K Followers 3K Following Popgen @UCDavis. @[email protected] . Tweets, grammar, & spelling are my views only.He/him. #OA popgen book https://t.co/R6I2dcaEGfJoshua G. Schraiber�.. @jgschraiber
8K Followers 8K Following Evolution, statistics, software, slacktivism. Once left a tenure track job, but trying to get one again. @docedge85 and @mwpen pay my billsDmitri Petrov 💔 @PetrovADmitri
15K Followers 4K Following Evolutionary Biologist at Stanford. Rapid Evolution, Adaptation, and Genomics. Open Science advocate.Andrew Kern @pastramimachine
15K Followers 4K Following Evolution, population genetics, machine learning. rhythm section. he/himMichael Hoffman @mich.. @michaelhoffman
23K Followers 7K Following Chair, Comp Bio & Medicine Program, Princess Margaret Cancer Centre. Assoc Prof, Med Biophysics & Comp Sci, University of Toronto. COI https://t.co/CvupKNIjZrMatthew Hahn @3rdreviewer
12K Followers 571 Following Population geneticist. Hobbies include: two kids.Jonathan Eisen @phylogenomics
66K Followers 10K Following Bio. Prof. @UCDavis "All microb(iom)es, all the time" Lab: https://t.co/XVzbMvveOE Ted talk: https://t.co/74jjCOFY90 Pics: https://t.co/waXqjRp6PcRichard Sever @cshperspectives
21K Followers 1K Following Assistant Director of Cold Spring Harbor Laboratory Press, bioRxiv & medRxiv Co-FounderAaron Quinlan @aaronquinlan
17K Followers 1K Following Genome mutation, software for genomic discovery. https://t.co/6GKjALLFfk Co-director, DELPHI Data Science Init.: https://t.co/8uWRcIzWRrRebekah Rogers @evolscientist
5K Followers 3K Following Bioinformatics, UNCC, Genetic Novelty. Editor at JEB and MBE.Eric Topol @EricTopol
694K Followers 589 Following physician-scientist, author, editor. Ground Truths: https://t.co/YhatcBT0hAAnne Carpenter, PhD @DrAnneCarpenter
22K Followers 2K Following Discovery in images. Enthralled by science. 5 kids. She. SAB Recursion, Quiver. Founder SyzOnc. https://t.co/CQCHnSAc9MJason "boundless deli.. @JasonWilliamsNY
6K Followers 4K Following Asst. Dir. @DNALC @CSHL/ @CyVerseOrg /@thecarpentries/#AreciboC3/ #Foodie #ClassicalMusic #StarTrek /lifescitrainers.org —my own opinions.Dr Adam Rutherford @AdamRutherford
166K Followers 3K Following Back off man, I'm a scientist. President of @Humanists_UK Lecturer in Genetics @UCL Genetics, race, eugenics, history of science, movies, books, cricket, +–=÷×Doc Edge @DocEdge85
5K Followers 3K Following Assistant professor in quantitative and computational biology @USC. Genetics, evolution, and a bit of statistics.Convergence Institute @ConvergenceInst
196 Followers 29 Following Institute of multi-disciplinary scientists @HopkinsKimmel developing on grand challenge problems to pioneer new technologies for translational cancer research.HopkinsQS @HopkinsRPQS
350 Followers 167 Following The Research Program in Quantitative Sciences develops and applies new quantitative methods for cancer biology at @HopkinsKimmel.Dr. Elana J Fertig @FertigLab
7K Followers 7K Following Inter-dimensional cancer biologist. Prof Oncology @HopkinsKimmel, AMS, and @JHUBME @JohnsHopkins, Director @HopkinsRPQS, co-Director @ConvergenceInstJonty @Jontys_Corner
7K Followers 1K Following Motorsport, Gaming, 40k-Vulkan Lives, Cats, @LOTRO - Evernight #MentalHealthMatters #Anxiety #Depression #EmotionalDysregulation Prv: @ThrobbsterPaul Schofield @pschofie79
14K Followers 7K Following Associate Professor of Philosophy, Bates College. Ethics, Politics, Film. Author of DUTY TO SELF (OUP, 2021). Researching housing justice and homelessness.Will Stancil @whstancil
81K Followers 509 Following I research metro policy and civil rights, focused on housing and schools. Proud member of Do-Something Twitter. Running for MN House! https://t.co/Q5xzs7kUmwrentzsch @rentzsch
8K Followers 1K Following indie & web developer; cofounder of https://t.co/KwjDXmEBYy; cohost of https://t.co/Cr5rrEdnGxYogi Jaeger 💙 @yog.. @yoginho
4K Followers 3K Following I'm on Mastodon: @[email protected] https://t.co/mRnP18fa1W https://t.co/IqWsdB5peb https://t.co/PhDSfK0bib https://t.co/Xoj4sYvs3dArc Institute @arcinstitute
22K Followers 24 Following A new scientific institution for curiosity-driven biomedical science and technology.David Simon @AoDespair
324K Followers 652 Following Author, journalist, and TV writer/producer. Angriest Man in Television is faint praise indeed.Kasper Daniel Hansen @KasperDHansen
2K Followers 370 FollowingAndrea Betancourt @texasrulz1
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2K Followers 1K Following We are a group of scientists & physicians passionate about #epigenetics #genomics #hematopoiesis #leukemia #cancer #metabolism #stemcellsJed Herrmann @HerrmannJed
182 Followers 60 Following Policy innovator, helping governments get better results through data; Results for America; Obama Administration; Bloomberg Administration in NYC; tweets mine.Nate Kornell @natekornell
1K Followers 220 Following Williams College prof. of cognitive psych. I don't use Twitter much anymore.Sarah Jacobson @SarahJacobsonEc
7K Followers 1K Following I'm an environmental economist at Williams College. she/herMatt Carter @__Matt_Carter__
2K Followers 521 Following Associate Professor of Biology and director of the Rice Center for Teaching at @WilliamsCollege.Michael Beschloss @BeschlossDC
856K Followers 3K Following PRESIDENTS OF WAR, 9 other books. @NBCNews Presidential Historian. @PBS contributor. Born Chicago. My Threads link is https://t.co/9r7VWCiF7WKen Dilanian @KenDilanianNBC
202K Followers 3K Following NBC News Justice and Intelligence Correspondent, based in DC. Former AP, LA Times, USA TODAY, Philly Inquirer. Williams CollegeVictor Cazares, Ph.D. @VicCazares
559 Followers 1K Following Asst. Prof of Neuro @ Williams College | #RISE #NSP #BRAINS #IRACDA | 🚵🏽♂️ | ⛰️🐕🦺🥾 | ☕ | 🏀 | 🌶️❤️🔥 | 🇲🇽🇺🇲 | https://t.co/ORoxBluAXhDr. Laura J. Martin @Laura_J_Martin
1K Followers 653 Following Author of WILD BY DESIGN (https://t.co/ECSHA05Oyr) | Envi Studies prof @WilliamsCollege | Science x Society | Working on global history of auxinic herbicidesMaya Bodnick @MayaBodnick
1K Followers 744 Following Harvard '26, Nueva '22, columnist @thecrimson, Slow Boring researcher@chadtopaz @chadtopaz
340 Followers 0 Following Twitter has become unusable! Not really here anymore, so find me at https://t.co/mvCxmgkkvs.Helpful Community Not.. @HelpfulNotes
110K Followers 0 Following Keep up-to-date with the @CommunityNotes people are finding helpful.JAX Genomic Education @JAX_Education
3K Followers 1K Following Developing the next generation of modern biomedical leaders through experiential learning and educational programming at @jacksonlab, around the 🌎 and online.James Hoffmann @jimseven
126K Followers 533 Following Square Mile Coffee Roasters / Youtuber / Author / (sorry, but no recommendations via @ or DM)Cell Genomics @CellGenomics
8K Followers 926 Following Cell Genomics is a new gold #OpenAccess and #OpenScience research journal that represents the forefront of #genetics and #genomics 🧬Linda Yaccarino @lindayaX
562K Followers 1K Following Driven by industry progress, inspired by provocative leadership, plus don't mind a good pair of shoes or a great @PennStateFball scoreboard either.Princeton Precision H.. @PrincetonPPH
121 Followers 63 Following Interdisciplinary AI initiative @Princeton transforming clinical practice & health policy to enable responsive, equitable, and precisely-targeted healthcare.Dr. Jean Fan @JEFworks
7K Followers 382 Following Assistant prof @JHUBME. Doing #singlecell #spatialtranscriptomics #bioinformatics. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet.Chris Lattner @clattner_llvm
79K Followers 182 Following Building beautiful things like Mojo🔥 and MAX @Modular, lifting the world of production AI/ML software into a new phase of innovation. We’re hiring! 🚀🧠Joel Boerckel @jboerckel
8K Followers 4K Following Assc Prof: @McKayLaboratory @PennMedicine @PennBioeng. Reverse-engineering development through mechanobiology. Prov. 25:2. 🦛Mae Woods @maelouisewoods
753 Followers 703 Following Postdoc interested in compbio, HPC & math. Currently working in immunology & immunotherapy GitHub https://t.co/ql99gQpTJ4 always happy to share code/ideasSaumya Sisoudiya, PhD @saumyads02
439 Followers 551 Following Scientist I, Computational Discovery @FoundationATCG | PhD from @bcmhouston @splon Lab. Opinions my own. She/herPugh Lab @PughLab
1K Followers 483 Following Translational Cancer Genomics Lab | Dr. Trevor Pugh, PhD, FACMG | Single-cell Genomics. Immunogenomics. Cell-free DNA. | Also known as @[email protected]Simona Cristea @simocristea
7K Followers 495 Following Head of Data Science at Hale Center for Pancreatic Cancer | Group leader @DanaFarber @Harvard | We ❤️ genomics, evolution & LLMs | PhD @eth | 🇷🇴🇸🇪🇨🇭🇺🇸Itai Yanai 💔 @ItaiYanai
24K Followers 2K Following Professor at the NYU School of Medicine. Co-host of the 'Night Science Podcast' https://t.co/Sy1rcWXGLz @nightsciencepodB Thuronyi (they/them.. @thuronyi
658 Followers 783 Following Synthetic biologist, V. natriegens booster, Sheets torturer & asst prof Chem @ Williams CollegeChildren's Tumor Fdn @ChildrensTumor
7K Followers 835 Following The Children's Tumor Foundation is dedicated to ending NF, a group of genetic conditions that cause tumors to grow all over the body, through research.Jo @JoJoFromJerz
947K Followers 5K Following mom. jersey. dem. news junkie. Lebanese. hothead.views are my own.https://t.co/zueo7YDFWx https://t.co/q4qgmwRLzt. https://t.co/9Fp1kdOX6wFabian Theis @fabian_theis
29K Followers 446 Following Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMucMathew Barber @mathartic
747 Followers 3K Following SrDir DataSci @InscriptaInc | Past: @RegeneronDNA, @TempusLabs, @Ancestry DNA sci team | Post-doc @UChicago, PhD @Cambridge_Uni | All opinions are my ownShweta @shramdas
1K Followers 3K Following Assistant professor @cbr_iisc. Computational geneticist/bioinformatician. Genetic architecture of complex traits, human genetics, gene regulation.The preprint for the #SingleCell #PediatricCancer Atlas (ScPCA) is now available!🎉 Originally comprised of data from 10 projects funded by @AlexsLemonade, the ScPCA Portal now has 518 samples from 51 cancer types and continues to grow. Read about ScPCA! biorxiv.org/content/10.110…
Awkward moment! He has to suck up to Tucker Carlson who made him famous but he can't quite yet deny evolution because his ostensible expertise in evolutionary biology is his guru superpower
A career in research science: lean into something that looks decidedly unsettling and wobbly really hard - if you don’t flip immediately, try to hold that edge for the next 30 years. I remember how scary it looked when I was a student, but it also is a lot of fun … mostly.
@satijalab @Josephmrich @lpachter Beautiful response and discussion, but you are forgetting an important aspect: the USER. These type of analysis are complex and should not be done push button style using defaults and no understanding. Parameters are meant for tuning, analysis should be done with care.
SUCCESS: github.com/manubot and github.com/hetio are back online. A post-mortem to come once we sort out all the details, but glad these resources are now available.
@conradder I told them not to do anything silly while I was away
There should be room in academia for professors who don't publish, but who know things. Not dead wood, who stopped learning in 1995. I mean: leaves for the summer, reads all summer rather than write, smokes a pipe on the quad and will talk to you about stuff.
@USAinUK Who could have guessed my book about tea would brew up such a storm the US Embassy needed to step in? If that’s what it takes to shed light on the importance of chemistry, then I’m not bitter. Add that grain of salt and make that tea in the microwave and see!
This is the kind of stuff I love: this dataset and #genome we generated from a plant sample frozen in RNAlater (in -20, no less) FOR 13 YEARS!.... Check out Vic Albert's full poster, PO0289, without my crappy crop job. #PAG31 @PhaseGenomics
@NathanClark111 Thanks will give it a try, I have new lab members and Se-Al was the best for learning the art of alignment!
A message from our President Wendy Raymond and Dean of the College John McKnight regarding Haverford student Kinnan Abdalhamid who was shot in Vermont:
I'm resigning as an editor at @eLife. Elife’s handling of this has been incredibly poor x.com/mbeisen/status…
I have therefore made the unhappy decision to resign as senior editor at @eLife, after ten years working for the journal.
Not to be a crankypuss, but awarding a Nobel for work that suffered from not being taken seriously for decades only *after* it proved to be of incredible value is not a triumph of prizemaking - it's a complete condemnation of it and the entire culture of modern academic science.