Jishnu Das @jishnu1729
Asst Prof - Univ of Pittsburgh SOM (https://t.co/QXxIOm00Zv). Systems immunologist. Views world as networks at different scales. 'Transformed' engineer. Avid reader. jishnulab.org Pittsburgh, PA Joined August 2013-
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Thank you very much @naturemethods for this Research Highlight describing our new interaction language model, SWING, that learns the lexicon of protein and peptide interactions. nature.com/articles/s4159…
Thank you very much @naturemethods for this Research Highlight describing our new interaction language model, SWING, that learns the lexicon of protein and peptide interactions. nature.com/articles/s4159…
Read the Research Briefing on SWING, here! nature.com/articles/s4159…
Read the Research Briefing on SWING, here! nature.com/articles/s4159…
Pittsburgh group presenting at the 19th International Workshop on Scleroderma Research! @PittRheum @PittDeptofMed @jishnu1729
Thanks a lot @naturemethods for highlighting SWING, a generalizable biologically-inspired interaction #language_model that learns that lexicon of peptide and protein interactions & the impact of #genetic #variation on these interactions. #ML
Thanks a lot @naturemethods for highlighting SWING, a generalizable biologically-inspired interaction #language_model that learns that lexicon of peptide and protein interactions & the impact of #genetic #variation on these interactions. #ML
Today in @naturemethods, we define a new lexicon for protein/peptide interactions. SWING is a generalizable zero-shot interaction #language_model that outperforms pLMs in multi-context predictions of the impact of genetic variation on interactions. #ML nature.com/articles/s4159…
For CSI COSI, I am very thankful to my co-chair @jishnu1729 and steering committee @YuriPritykin , @haticeulku, Aly Azeem Khan. And everyone who submitted their for consideration for this session iscb.org/ismbeccb2025/p…
I came to the US in 2010 as a PhD student & it transformed my life. Privileged to lead (since 2020) a #systems #immunology lab comprising an incredible group of men & women. This country gave me opportunities I couldn't have dreamed of elsewhere. Proud #US citizen. Happy 4th all!
Check out our recent review in @MolTherapy about how machine learning approaches enable the discovery of therapeutics across domains cell.com/molecular-ther…. We cover a range of #ML techniques with wide applications to #cellulartherapy.
Check out our recent paper in @JCI_insight where we use interpretable #ML to uncover signatures of pathogenesis in localized #scleroderma (#morphea). insight.jci.org/articles/view/…
Thank you @JCI_insight for highlighting our collaborative work with @corrine_kliment using interpretable #ML approaches to uncover a novel role for GSN in #COPD. We used a range of approaches including a recent flagship method from our lab - SLIDE (nature.com/articles/s4159…).
Thank you @JCI_insight for highlighting our collaborative work with @corrine_kliment using interpretable #ML approaches to uncover a novel role for GSN in #COPD. We used a range of approaches including a recent flagship method from our lab - SLIDE (nature.com/articles/s4159…).
If you're at @ASTMH #TropMed24 do add our Systems Immunology of Tropical Diseases symposium (138) to your schedule for Sat Nov 16th. Speakers include @nadegenziza, Dr Elizabeth Aitken & my co-chair @jishnu1729. Exciting talks across AI/ML, Malaria, TB & NTDs incl Schistosomiasis.
Thank you @CellReports for highlighting our work showing how #protein #networks with structural resolution can identify #immunomodulatory variants in infectious disease. Key coding variants often missed by conventional #GWAS can be picked up by our approach.
Thank you @CellReports for highlighting our work showing how #protein #networks with structural resolution can identify #immunomodulatory variants in infectious disease. Key coding variants often missed by conventional #GWAS can be picked up by our approach.
Uncovering cell-type-specific immunomodulatory variants and molecular phenotypes in COVID-19 using structurally resolved protein networks dlvr.it/TG1HSf
Super fun collaboration with @poholeklab now out in Nature Immunology - nature.com/articles/s4159… . We use interpretable #machine_learning to help identify spatial microniches of IL2 in a murine model of allergic #asthma.
Super fun collaboration with @poholeklab now out in Nature Immunology - nature.com/articles/s4159… . We use interpretable #machine_learning to help identify spatial microniches of IL2 in a murine model of allergic #asthma.
BREAKING NEWS The Royal Swedish Academy of Sciences has decided to award the 2024 #NobelPrize in Chemistry with one half to David Baker “for computational protein design” and the other half jointly to Demis Hassabis and John M. Jumper “for protein structure prediction.”
Study from my lab out today in @ScienceTM - using interpretable #ML on deep #antibody profiles, we uncover mechanisms of schistosomiasis pathogenesis. Collaborative work with @anisircar & @Fairley_NTD. Co-led by @TrirupaChakrab2 & Anushka Saha. science.org/doi/10.1126/sc…
Great to see this out today in @ScienceTM! Collaborative work with @jishnu1729 at Pitt & @Fairley_NTD at Emory and collaborators at CDC & in Brazil. Led by Anushka (@CoulterBME alum) in my lab & @TrirupaChakrab2 at Pitt. Antibody-omics for schistosomiasis diagnostics & beyond 👇
Congratulations to all awardees especially to our own @Niranjana89 !
Congratulations to all awardees especially to our own @Niranjana89 !
Delgoffe Lab @DelgoffeLab
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55 Followers 90 Following Ph.D candidate in Biological Engineering at MIT. Interested in Bioengineering, Systems Biology, Bioinformatics and science in general.
Douglas A Lauffenburg... @DALauffenburger
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132 Followers 305 Following @Pitt_PMI | PhD Graduate Student | Passionate About Phage-Host Interactions & Antibiotic Resistance 🧫🔬
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Dina🎀 @Colton456NMKO
38 Followers 465 Following Painting enthusiast | Reading enthusiast | Likes quietness | Mother | Daughter🍁🌻🎀
Arutha K @aruthak
2K Followers 5K Following Clinical-oMx Lab Head, Frazer Institute, UQ. Scientific Director, QLD Spatial Biology Centre. (Views my own)
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Jack Killinger @jrkillinger99
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32 Followers 307 Following Passionate about mitochondria biology research 🧬. Seeking to unravel the dynamic world of mitochondria 🧪📕.
Eduardo T Jurado-Cobe... @JuradoCobena
65 Followers 397 Following Passionate and curious about science. Opinions are my own and not those of my employer.
ReenaMukhiya @reennamukhiya
16 Followers 239 Following
JCI insight @JCI_insight
40K Followers 2K Following High-quality basic and translational research representative of all biomedical specialties and physician-scientists. Bluesky: https://t.co/Kz22hHNYOU
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25 Followers 160 Following Postdoctoral Associate, @OveracreLab @UPMC | Cancer Immunology and Gut microbiome | Immune related Adverse Events | Tertiary Lymphoid Structures
Delgoffe Lab @DelgoffeLab
7K Followers 394 Following Cancer Immunometabolism - Professor - Director: Tumor Microenvironment Center - @PittTweet @UPMCHillmanCC - CoFounder:Novasenta - EiC:Immunology - views my own
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Jian Ma @jmuiuc
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Rahul Satija @satijalab
28K Followers 352 Following Core Member, New York Genome Center; Professor, Biology, NYU
Tullia Bruno, PhD @BcellBruno
2K Followers 417 Following Bruno lab| 15+ years of cancer immunology | B cells and TLS in cancer | T cell enthusiast, B cell convert #scientist #womaninscience #sassyscientist
Anshul Kundaje (anshu... @anshulkundaje
27K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Nature Methods @naturemethods
151K Followers 1K Following Nature Methods publishes cutting-edge methods, tools, analyses, resources, reviews, news and commentary, supporting life sciences research. Tweets by editors.
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1K Followers 2K Following 👩🏻🔬Principal Investigator @US_FDA | Therapeutics Genetics in Rare Diseases 💪🧠🧬🐀💉 | 🔋 by ☕ & 😍 | HopOnHopOff 🇮🇩🇳🇱🇨🇦🇺🇸➡️🚀🌜
John Tsang @tsanglab.... @TsangLab
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Cell Press @CellPressNews
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1K Followers 3K Following 30-sec immunology news, delivered daily. No scientific knowledge necessary, built for everyone.
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Dr. Cristina Espinosa... @Krispy_ed
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Science Translational... @ScienceTM
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Zandrea Ambrose (zand... @ProfAmbrose
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Samuel A Myers @SAMyers_lab
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CPCB @CMUPittCompBio
772 Followers 84 Following The official Twitter account of the Joint Carnegie Mellon / University of Pittsburgh Ph.D. Program in Computational Biology.
Melanie Königshoff @m_konigshoff
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169 Followers 167 Following
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779 Followers 226 Following May contain fat... "Still not lovin' disease" (https://t.co/E5HEwNuPR8) | "Come, give science a hug" (https://t.co/NKvoFbIN9y) | Tweets by π @lorenzadlung
Xihong Lin @XihongLin
8K Followers 419 Following Professor of @HarvardBiostats & @HarvardStats, (Bio)statistics,Data Science,Genetics Genomics,Epidemiology,Health, Education,COVID19 analysis,Views are all mine
Nathan Salomonis @nsalomonis
431 Followers 172 Following Computational biologist playing with splicing, genomics and single-cells.
Maninjay Atianand @atianand_lab
494 Followers 862 Following building a NewCo. ex. asst prof @PittTweet | #RNA #microprotein #biotech
Katie (Catherine) Poh... @kpoho
356 Followers 458 Following Pediatric rheumatologist @Childrenspgh & @PittTweet. Lymph nodes, stromal cells, T cells, and lipid metabolism. https://t.co/bVUNQKyTZE
Ayshwarya Subramanian @ayshwaryas
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Rikard Forlin @RikardForlin
84 Followers 154 Following MD, PhD-student in Brodin's lab • Systems Immunology, especially interested in modeling and cell-cell interactions
Madhura Mukhopadhyay @madhuramukho
1K Followers 937 Following PhD. Immunologist. Scientific Editor @naturemethods for immunology & stem cell biology. 🇮🇳to🇩🇰to🇸🇪to🇫🇷to🇺🇸 Views my own.
Maria Chikina @ChikinaLab
687 Followers 150 Following Computational Biologist. University of Pittsburgh.
Danny Saban @SabanLab
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130 Followers 77 Following #CompBio, #SystemsBio, #DeepLearning, structural proteomics, network biology, functional genomics and proteomics, @WeillInstitute, @Cornell
Haiyuan Yu @haiyuanyu
304 Followers 63 Following Tisch University Professor, @WeillInstitute, @Cornell, network systems biology, deep learning, structural proteomics, gene regulation, human disease
Wendy Thomas @WendytBioE
33 Followers 77 Following Wendy Thomas is a Professor of Bioengineering at the University of Washington who seeks ways to increase the diversity and inclusivity of her institution.
Bo Wang @BoWang87
13K Followers 2K Following SVP and Head of Biomedical AI @Xaira_Thera; Associate Prof @UofT; Chief AI Officer @UHN; former PHD, CS @Stanford; opinions my own. #AI #healthcare #biology
Swapnil Keshari @SwapnilKeshari7
18 Followers 80 Following Challenging Status Quo | Computational Biologist by work, Wanderer by passion, Designer by heartTrends for United States
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