rna-tools @rna_tools

a toolbox to analyze structures and simulations of RNA - docs @ https://t.co/pprg50zXwb & https://t.co/MEd6dkdXdG rna-tools.online Joined December 2016

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rna-tools @rna_tools

a year ago

Sometimes you gotta go old-school and stick with the trusty PDB format. Whether it’s for the nostalgia, the simplicity, or using those classic tools, PDB has its charm! Need a smarter way to convert mmCIF to PDB? Check out my latest update here github.com/mmagnus/rna-to…

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MarcinMagnus 🦋 @mmagnus42.bsky.social @MarcinMagnus

a year ago

One of the best tools for RNA 3D structure prediction, now with an updated server! academic.oup.com/nar/advance-ar…

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MarcinMagnus 🦋 @mmagnus42.bsky.social @MarcinMagnus

2 years ago

From RNA to AI, life escalates quickly! (ChatGPT/Dalle3)

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MarcinMagnus 🦋 @mmagnus42.bsky.social @MarcinMagnus

2 years ago

Join our #7 webinar of a series on RNA structure, CASP-RNA-Sig: “Ribonanza: big data for RNA structure prediction” by Dr. Rhiju Das (@RDasLab). Read more and join the Google group to learn more! hackmd.io/@mmagnus/HyGjE… @RachaelKretsch #rna #casprnasig

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RNArtist @rnartist_app

2 years ago

Thank you for the warm welcome to the first official release of RNArtist! Version 1.0.7 is available. If you already installed RNArtist, it will self-update during the next start. You can check the changelog here github.com/fjossinet/RNAr… #javafx #RNA #bioinformatics

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The Nobel Prize @NobelPrize

2 years ago

BREAKING NEWS The 2023 #NobelPrize in Physiology or Medicine has been awarded to Katalin Karikó and Drew Weissman for their discoveries concerning nucleoside base modifications that enabled the development of effective mRNA vaccines against COVID-19.

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rna-tools @rna_tools

2 years ago

—fetch <pdb_id>:<chain 1>+<chain 2> an easy way to download only given chain(s) for PDB ID

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rna-tools @rna_tools

2 years ago

—extract, easy way to extract given chains and residues from your favorite pdb file

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rna-tools @rna_tools

2 years ago

Check out RNAMasonry builds RNA models from recurrent 3D motifs using (optional) SAXS data with @ktototak iimcb.genesilico.pl/rnamasonry/

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MarcinMagnus 🦋 @mmagnus42.bsky.social @MarcinMagnus

2 years ago

Join our #6 webinar of a series on RNA structure, CASP-RNA-Sig: “SQUARNA - an RNA secondary structure prediction method based on a greedy stem formation model” by Dr. Eugene Baulin. Read more! hackmd.io/@mmagnus/ByPMJ… @RachaelKretsch #rna #casprnasig @febos41 @IIMCB_Poland

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MarcinMagnus 🦋 @mmagnus42.bsky.social @MarcinMagnus

2 years ago

Join our #4 webinar of a series on RNA structure, CASP-RNA-Sig: “Hidden errors in cryo-EM and crystal structure models of macromolecules” by Dr. Grzegorz Chojnowski. Read more hackmd.io/@mmagnus/Byuyv… with @RachaelKretsch @ktototak @EMBLHamburg @WilmannsGroup

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MarcinMagnus 🦋 @mmagnus42.bsky.social @MarcinMagnus

2 years ago

Join our #3 webinar of a series on RNA structure, CASP-RNA-Sig: “RNA origami as a structure prediction target and a tool for structural biology” by Dr. Ewan McRae. Read more and join the Google group to learn more! hackmd.io/@mmagnus/Sy9xb… with @RachaelKretsch

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rna-tools @rna_tools

2 years ago

Tomorrow! 🤘

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rna-tools @rna_tools

2 years ago

Join the second webinar!

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rna-tools @rna_tools

2 years ago

Sometimes all we need is some contact(s) ;-) In deep teal are marked WC interactions and light green nWC interactions obtained with ClaRNA/rna-tools. On the left is the plot, and on the right is a PDB file with marked interactions.