Ricardo O. Ramirez Flores @roramirezf94
🇲🇽 Scientist @saezlab in @emblebi studying the molecular biology of multicellular disease processes ⌾ @lcgunam @UNAM_MX @UF @UniHeidelberg alumni mixcloud.com/ricoramirez94/ Heidelberg, Alemania Joined September 2015-
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Ricardo O. Ramirez Flores retweeted
I'm thrilled to share with you that #VisiumStitched led by Nick Eagles has now been published Our #RStats / @Bioconductor 📦provides a framework for stitching together multiple #Visium @10xGenomics capture areas together doi.org/10.1186/s12864…
I'm thrilled to share with you that #VisiumStitched led by Nick Eagles has now been published Our #RStats / @Bioconductor 📦provides a framework for stitching together multiple #Visium @10xGenomics capture areas together doi.org/10.1186/s12864…
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Ricardo O. Ramirez Flores retweeted
I made a genomic scientists trained in Mexico 🇲🇽 starter pack. I'd like for our voices to be heard! If you can help spread the word, that'd be great! Thank you! @CDSBMexico @nnb_unam @RBioinformatica @lcgunam @lcgunam @ccg_unam @ibt_unam @LIIGH_UNAM
Ricardo O. Ramirez Flores retweeted
Our work with @schirmerlab in multiple sclerosis (MS) is out today in @NatureNeuro. We investigated lesion progression and cell-cell communication events in MS using snRNA-seq and spatial transcriptomics 🧠 See below ⬇️ nature.com/articles/s4159…
Ricardo O. Ramirez Flores retweeted
📢 Introducing CORNETO: a unified, knowledge-driven framework for multi-sample network learning & modeling via constrained optimization, supporting a wide variety of network methods and prior knowledge 💻Code: github.com/saezlab/corneto 📜Paper: doi.org/10.1101/2024.1… 🧵👇
Ricardo O. Ramirez Flores retweeted
How good is our understanding of signaling pathways? In this study together w/ @savitski_lab @embl, we combine multiple state-of-the-art resources to evaluate signaling pathway inference using phosphoproteomics and kinase-substrate networks tinyurl.com/2n43jsc4
Ricardo O. Ramirez Flores retweeted
Kidney fibrosis as a molecular process is poorly understood. In this new study together w/ Pepperkok lab @embl, we present a time-resolved #multiomics + computational network modeling approach in combination w/ phenotypic assays to study #kidneyfibrosis tinyurl.com/multiomicsCKD
Ricardo O. Ramirez Flores retweeted
"Several members of my faculty [told] me, 'You can't get a job at Berkeley without a Cell, Science or Nature paper'. These [same] people had gotten jobs at Berkeley without a [CNS] paper...We believe this to be true to an extent that's irrational" @mbeisen youtube.com/watch?v=lg0-IR…
Ricardo O. Ramirez Flores retweeted
And they cost ~1% of journal articles (~0.01% of research). So whatever you think of peer review (we need more vs less vs different vs none), supporting a mechanism that provides rapid and universal free access to knowledge should be a no-brainer journals.plos.org/plosbiology/ar…
And they cost ~1% of journal articles (~0.01% of research). So whatever you think of peer review (we need more vs less vs different vs none), supporting a mechanism that provides rapid and universal free access to knowledge should be a no-brainer journals.plos.org/plosbiology/ar…
Ricardo O. Ramirez Flores retweeted
🚀 Excited to share our new publication in @NatureBiotech! We explore scalable strategies for phenotypic screening using innovative methods with to address the challenges when the number of candidates is simply too large. Check out the details tinyurl.com/5f8vjhpp! (1/10)
Ricardo O. Ramirez Flores retweeted
"When I suggested the data were uninterpretable given the sample size and methods, she responded that the journal had an Impact factor in the high 30s (suggesting that regardless of my opinion, it was worth attention)" journals.biologists.com/jcs/article/13…
Ricardo O. Ramirez Flores retweeted
🚀 Exciting postdoc opportunity in collaboration with @AstraZeneca. Our EAZPOD fellowships push the boundaries of cutting-edge computational biology in oncology. Combine method development & modelling with preclinical multiomics data. Find out more 👇 ebi.ac.uk/research/postd…
Ricardo O. Ramirez Flores retweeted
STAMP is OUT! Sequencing-free #singlecell RNA and Protein profiling. Game-changing approach for scalable and cost-efficient analysis of single cells. The future starts today! Amazing @LGMartelotto @DrJasPlummer biorxiv.org/content/10.110…
Ricardo O. Ramirez Flores retweeted
👉Consider joining us for a post-doc at @emblebi & @ASTRAZENECAUK as part of the EAZPOD program to study multicellular mechanisms associated with #cancer treatment resistance! #postdoc ebi.ac.uk/research/postd…
👉Consider joining us for a post-doc at @emblebi & @ASTRAZENECAUK as part of the EAZPOD program to study multicellular mechanisms associated with #cancer treatment resistance! #postdoc ebi.ac.uk/research/postd…
Ricardo O. Ramirez Flores retweeted
Posting a preprint only after your paper is rejected by a journal is not the way to do it..
For those interested in repurposing factor models for patient-level comparisons and inference of multicellular programs have a look at the great overview given by Leo of the foundation work and the applications/packages that we have built! Thanks for this 😊
For those interested in repurposing factor models for patient-level comparisons and inference of multicellular programs have a look at the great overview given by Leo of the foundation work and the applications/packages that we have built! Thanks for this 😊
Ricardo O. Ramirez Flores retweeted
Check out our work on fibroblast activation patterns in HF models! Huge thanks to my co-lead @LauraWienecke 🙏 from @LeuschnerLab!
Check out our work on fibroblast activation patterns in HF models! Huge thanks to my co-lead @LauraWienecke 🙏 from @LeuschnerLab!
Ricardo O. Ramirez Flores retweeted
"Peer review...for centuries the standard tool to determine an academic paper’s suitability for publication". nature.com/articles/d4158… No. The term is only a few decades old and Nature itself didn't it routinely until the 1970s. 1/3
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