The Sonnenburg Lab @LabSonnenburg
Twitter account of the Sonnenburg Lab at Stanford University linktr.ee/sonnenburglab Joined March 2021-
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A fantastic postdoc position in bioinformatic microbiome research is available in @LabSonnenburg at Stanford! I'm leaving after 4 great years to start my lab at Boulder, and Justin is looking to fill my position. DM me or email Justin ([email protected]) for questions
Very excited to share this work, inspired by @MattagenOlmics and my mutual intrigue with IgA and conversations had as he interviewed for @LabSonnenburg. A big thanks to Matt for driving this project with his truly exceptional metagenomics & bioinformatics skills and enthusiasm.
Very excited to share this work, inspired by @MattagenOlmics and my mutual intrigue with IgA and conversations had as he interviewed for @LabSonnenburg. A big thanks to Matt for driving this project with his truly exceptional metagenomics & bioinformatics skills and enthusiasm.
Excited to share our new technique for studying IgA binding in the microbiome! Fascinated by IgA since joining the @LabSonnenburg , this work beautifully leverages @SeanPaulSpencer's immunology & my metagenomics expertise to make fundamental discoveries doi.org/10.1101/2023.1…
Congratulations Leah!!
Thrilled to share that I will join @BerkeleyBioE as an Asst Prof. in Jan 2024! My lab will study how diet + microbiome molecules affect tissue homeostasis, focusing on podocyte biology. If interested in applying chemoinformatics and molbio to decipher chemical signals, reach out!
Excited to see our @CellCellPress Resource article out in print today: "Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes." doi.org/10.1016/j.cell… . This article presents a deep dive into the impact of industrialization on the gut microbiome (1/5)
This past Friday, Rebecca Gellman gave a fantastic her thesis presentation on “Differential carbohydrate metabolism shapes colonization by intestinal Bacteroidetes” Congratulation Dr. Gellman! We are excited for her next adventure as a postdoc in the Comstock lab at @UChicago
My first first-author paper is out on biorxiv! Are you curious about how diet influences which bacteria thrive in our gut microbiome? Check it out here: biorxiv.org/content/10.110…. Quick summary (and a dance version!) below 1/
John F. Cryan @jfcryan
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Edelblum Lab @EdelblumLab
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Sean Gibbons 🦠💩.. @gibbological
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Chassaing Laboratory @BenoitChassaing
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Sudarshan A. Shetty (.. @gutmicrobe
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Katie Guzzetta 🌻 @ktguzz
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Marcus Böhme @BoehmeMarcus
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Michael Zimmermann La.. @Zimmermann_Lab
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HandLab @thehandiestlab
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Nature Microbiology @NatureMicrobiol
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hutlab @hutlab
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Nature Reviews Gastro.. @NatRevGastroHep
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Hepworth Lab UoM @Hepworth_Lab
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Typas Lab @TypasLab
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Nature Reviews Microb.. @NatureRevMicro
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Belkaid Lab @BelkaidLab
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Narendra Agarwal @kenagarwal
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Alyssa Haynes @Alyssa__Haynes
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Nazli Dizman @NazliDizman
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Katerina Lin @Veritasluxx
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Dr. Carolyn Ibberson @CBIbberson
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Zsófia Tagscherer @zsofia_tag
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Luo(Jack) Jia 贾洛 @Scienceyoungguy
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Matthew Herdman @matt_herdman
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Omar Tovar @Omaretoh
78 Followers 196 Following Postdoc at the @LabMizrahi researching the rumen microbiome. Eat tacos 🌮
a sassy phenotype @jacksumner22
268 Followers 285 Following Interdisciplinary Biology PhD Candidate @NorthwesternU • chaotic coffee consumer • systems biology, biochemistry, *omics 🧬• he/him 🏳️🌈
Vicki Shepherd @VShepherdMSc
1 Followers 33 Following MSc Health & ClinPsychSci (Distinction) graduate. Researching gut-immune-brain interactions to discover nutrients that improve cognitive health. #omics 🦠🌱
Kun @Kun12309047
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sjwijsiene jdjejddb @sjiwbsjdjdein
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sadiq @sadiq_mohd_s
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Madeleine Said @MadeleineSaid
79 Followers 946 Following I'm a registered dietitian and health coach who specializes in helping people with diabetes reverse their condition and reclaim their health!
黃回晨 @fatfoodeat
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Picks @KCMHealthSports
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Frank Anthony Davis @FrankADavis
2K Followers 878 Following Pro Pickleball Athlete - Former 🌎 #3 - Sponsorships ➡️ [email protected]
Sean Gibbons 🦠💩.. @gibbological
5K Followers 2K Following microbiome science | associate professor @isbsci | affiliate prof @UWBioE & @uwgenome | @uwescience & @AMIposts fellow | systems bio of 💩 🦠 | 🏳️🌈 he/him
Chassaing Laboratory @BenoitChassaing
2K Followers 1K Following Laboratory at @Inserm with interest in the microbiota and immunometabolism. In gut I trust. Bugs are my friends, tweets are my own
Kristina Campbell, mi.. @bykriscampbell
15K Followers 6K Following Reporting on the front lines of microbiome science. Health, diet, medicine, biotech. She. Mastodon @[email protected]
KorenLab @KorenLab
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hutlab @hutlab
3K Followers 221 Following The Huttenhower Lab at the Harvard T.H. Chan School of Public Health: microbial community function and human microbiome population health; Moderator @JTNearing
Bjo:rn Schro:der @bo_schroeder
661 Followers 470 Following Assistant Professor, PI, curious biochemist @MIMS_Umea @UmeåUniversity, interested in the interaction between diet, microbes and mucosa in the gut.
Ran Blekhman @blekhman
7K Followers 538 Following Assoc Professor at @UChicago / Human genomics & microbiome research / Opinions my own (he/him) / https://t.co/v7TIGaAfYu
Carolina Tropini, PhD @CTropini
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Michael Fischbach @mfgrp
6K Followers 708 Following Liu (Liao) Family Professor of Bioengineering, ChEM-H @Stanford.
Steffanie Strathdee, .. @chngin_the_wrld
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Dalia Perelman @dalita
71 Followers 164 Following Dietitian researcher @stanford. Working with the best people to answer interesting questions on human nutrition and health
Elisa Alberton Haas, .. @ElisaAHaas
412 Followers 535 Following Cardiologist, MD. Formerly PhD @InCorHCFMUSP. Interested in the intersections of #diet, #obesity, #exercise, #gutmicrobiome🦠 and #cardiovasculardiseases❤️
Phoebe Cheong @feebsnotsomicro
75 Followers 248 Following Graduated MSc Microbiome in Health and Disease @kingscollegelondon | Looking into research focused on the Microbiome in human wellbeing and the environment.
Interface Biosciences @InterfaceBio
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Leah Guthrie @LeahTGuthrie
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Shuo Han @theHanLab
490 Followers 165 Following Assistant Professor @dukebiochem @DukeMicrobiome @AgingDuke. Studying regulation of host aging by the gut microbiota. https://t.co/RKn5fkKzGi
Chan Zuckerberg Biohu.. @czbiohub
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Hannah Wastyk @wastyk
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Suzanne Devkota @Suzanne_Devkota
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Alan S.H. Tung 童聖.. @alanshtung
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Jess Fessler @thejessfess
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Andrew Hryckowian @A_Hryckowian
843 Followers 440 Following Gut microbiome, bacterial pathogens, bacteriophages. Assistant Professor, University of Wisconsin-Madison @uw_medicine @UWMadisonMMI. Views expressed = mine.
Kali Meredith Pruss @KaliPruss
136 Followers 361 Following Current post-doc @WUSTLmed, @Stanford PhD in @LabSonnenburg, @Dartmouth alum
Christine He @christine_y_he
672 Followers 808 Following Genomic applications @nanopore 🧬 | bioinformatics, metagenomics, microbiomes 🦠 | previously postdoc @ucberkeley, PhD @georgiatech
Tim Spector MD (Prof) @timspector
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Y. Erin Chen, MD PhD @yerinchen
1K Followers 259 Following Microbe-host crosstalk, engineering microbial therapies. Assistant Prof @MITBiology / Core Faculty @broadinstitute / Dermatologist MGH / HHMI Hanna Gray Fellow.
James King @ImmunoloJIKal
213 Followers 282 Following Post-doc obsessed with the world of Mucosal Immunology. Arnold Lab. UZH. Formerly of the Hepworth Lab.
Christopher Gardner @GardnerPhD
17K Followers 219 Following Stanford Nutrition Scientist since 1993. Human nutrition. Food systems. Stealth nutrition. Father of 4 boys. Husband of @DrMichelsonPhD
Willis Lung Lab @LabLung
319 Followers 313 Following We're the Willis Lung Lab @uabsom, @uabpeds. We're fascinated by the mycobiome and the gut-lung axis. #BLM #ScienceisCool @KentWillisMD
Tulika @tulika2709
676 Followers 465 Following Research on #gut #microbiota and #metabolic #diseases @Metabolcenter @backhedlab. Tweet about #microbiome and science in general. Happy to collaborate!
Tiphaine Le Roy @Titicaccae
478 Followers 956 Following Scientist • Gut Microbiota • Obesity & Metabolic diseases • 🐁🦠🧫💩
Taichi Suzuki @Taichi_A_Suzuki
746 Followers 548 Following Evolutionary biologist | Assistant Professor | Arizona State University | human microbiome, wild mice, population genetics | lived in 🇯🇵🇺🇸🇩🇪
NutriOmics: Karine Cl.. @ClementLab
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Mani Arumugam @microbiomix
747 Followers 127 Following Microbiome Systems Biology Group Leader at University of Copenhagen @uni_copenhagen
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4K Followers 4K Following Ph.D. student ❤️🩹🎗️⏳ @Elinav_lab @Weizmannscience. Passionate about #circadian, microbiome, immunology & metabolism (not necessarily in that order ⏰ 🌻🦔).
Dr. Kathy McCoy @KathyDMcCoy
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Bäckhed Lab @BackhedLab
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John F. Rawls @RawlsLab
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Ann Karim @aawesomekarim
106 Followers 822 Following microbial enthusiast. permaculture supporter. opinions are my own.
Steven Frese @koitaxoumemesa
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Dave Bolam @dave_bolam
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vaishnava lab @ShipraVaishnava
1K Followers 987 Following My lab at Brown University studies host-microbiome interactions in the gut.
Markus @MarkusGeuking
1K Followers 1K Following Associate Professor at the University of Calgary, Mucosal Immunologist/Microbiome Researcher, husband and dad.
Byron J. Smith @ByronJSmith
510 Followers 822 Following Microbial Ecologist / Bioinformatician, Postdoc in the Pollard Lab @GladstoneInst. PhD from #UMichEEB
Sam Light @lightsam1
709 Followers 840 Following Assistant Prof. interested in the gut microbiota, metabolism, biochemistry, etc.
Sofía Morán @Sofia_MoranR
114 Followers 341 Following Catedrática @Conacyt, Investigadora/ Researcher @INMEGEN. My interests #microbiota, #gutmicrobiota #diet
K Lab at Harvard Medi.. @K_Lab_JHU
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Matt Foley @MattHFoley
263 Followers 522 Following Postdoc @NCStateVetMed studying bile acids and probiotics. Michigan grad. Buffalo native. Coffee waker, protein shaker. he/him.
Kenda Rigdon, Ph.D. @KendaRigdon
668 Followers 1K Following Owner, Right in the Gut Nutrition. https://t.co/cAoYhUXaLD. Inventor. Ph.D. in #Microbiology #rightinthegut #yeast #mycology #gut #microbiome #nutrition
Hale Lab at OSU @Hale_Microbes
615 Followers 687 Following We study animal microbiomes in health and disease. (Dr. Vanessa Hale - Asst. Professor with @OSUVetPrevMed and @IDIatOSU). Views my own.
Emily Cribas, PhD @Emily_Cribas
383 Followers 2K Following Program Specialist @MetcalfURI | Cell Biology PhD @CAMBUpenn | Cofounder @ipnpsychedelics | #FGLI 🇭🇳 | politics, science, health, cats | Tweets my own 🔮
Stallings Lab @StallingsLab
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Hao Shi @haoiseetheworld
308 Followers 1K Following constantly looking for a bug somewhere @kanvasbio
THE SHINING was released 43 years ago today. Not a huge success on its release, it has gone down as one of Stanley Kubrick’s most popular films and most influential horror movies ever made. The behind the scenes story is as outrageous as you might expect… A THREAD 1/34
Probiotic supplements have grown into a multibillion-dollar industry. But they may do the opposite of boosting your gut health, according to studies and experts. washingtonpost.com/wellness/2023/…
Thank you @ErinBerge2 and team at @DiscoverMag for sharp edits. Thankful to sources including @nepaliaashish of @NYUAbuDhabi, @MattagenOlmics of @LabSonnenburg Do check their paper on @ScienceMagazine science.org/doi/10.1126/sc…
Was so fun to watch this paper over the years, congrats all!
Our paper examining lifestyle-associated differences in infant gut microbiota assembly is out, showing that Bifidobacterium infantis is vanishing in industrialized infants. Congratulations to @MattagenOlmics, Dylan Dahan, and a large collaborative team science.org/doi/10.1126/sc…
So excited that DEEP sequencing of Hadza metagenomes is available!! Congrats @MattagenOlmics @bryan_d_merrill @LabSonnenburg
Out today- “Robust Variation in Infant Gut Microbiome Assembly Across a Spectrum of Lifestyles”. A detailed look at microbiome assembly and acquisition in Hadza hunter-gatherer infants, primarily analyzed using deep metagenomic sequencing (1/5) biorxiv.org/content/10.110…
“The Hadza-specific discoveries reported in this work (including the finding of increased non-dyad vertical transmission among members of the same bush camp, a social structure with no equivalent among industrialized communities)...
Check out our lab's newest research on the non-industrialized infant microbiome- doi.org/10.1101/2022.0… Study uses metagenomics to reveal lifestyle-specific differences in HMO-degradation capacity, strain-level variation within B. infantis, vertical transmission, and more
Really great study on our own indigenous microbiomes in Malaysia! So much more to unpick from these 🦠
Interesting new study describing the impact of helminth infection on the human gut microbiome. Helminths are parasitic worms, and they were found to infect up to 90% of individuals living in the villages in this study biorxiv.org/content/10.110…
That's an interesting study, clarifying that microbe-dependent metabolite profiles remain highly individual even when consuming the same standardized diet.
If you're curious how variability between people in microbiome metabolic output is impacted if you eliminate dietary differences, check out our new study led by @LeahTGuthrie - biorxiv.org/content/10.110…
Congrats @LeahTGuthrie @GutBugs2! Fascinating study eliminating dietary differences between people to look at gut microbiome metabolic output. Spoiler alert: individualized metabolite profiles are largely maintained when everyone eats the same food! Same diet 🙅 Same metabolites
If you're curious how variability between people in microbiome metabolic output is impacted if you eliminate dietary differences, check out our new study led by @LeahTGuthrie - biorxiv.org/content/10.110…
Very happy to share what we learned when using a dietary intervention study to disentangle the roles of habitual diet and the microbiome in shaping microbiome-dependent metabolite levels.
If you're curious how variability between people in microbiome metabolic output is impacted if you eliminate dietary differences, check out our new study led by @LeahTGuthrie - biorxiv.org/content/10.110…
My Cell paper on the Fermented Fiber Food Study (FeFiFo) with @GabiFragiadakis , @LabSonnenburg, and @GardnerPhD was just featured in the New York Times!! nytimes.com/2021/08/13/wel… #research #fermentedfoods #fiber #newyorktimes #nytimes #fermentation #inflammation #health
Today's #shoutout to #womenInSTEM goes to @wastyk & @LabSonnenburg for their @CellCellPress paper showing that #Gut-#microbiota-targeted #diets modulate human immune status. (Eat fermented foods!) cell.com/cell/fulltext/…
@LabSonnenburg @GardnerPhD I'm excited to see this out! 👏😍👏
A great News & Views article about our recent paper. Excellent writing and insights by @MattagenOlmics @LabSonnenburg!
"Ancient human faeces reveal gut microbes of the past" - a fun @NatureNV article written with @LabSonnenburg. About a recent study performing metagenomic sequencing on 1000+ year old feces! nature.com/articles/d4158…
Congrats to 2015 Predoctoral Ford Fellow @KaliPruss who completed her dissertation in the @LabSonnenburg at @Stanford for her recently-published paper exploring metabolic host-microbe interactions between C. difficile and the host! ow.ly/w4Y550EOOoc
Let’s goooo! First author @KaliPruss (now postdoc in the Gordon lab) with a deeply mechanistic paper on C Dif infection and how we could modulate severity with a type of... sugar!?? @Nature #microbiome #therapy
New paper out today: C. difficile exploits a host metabolite produced during toxin-mediated disease. We show that C. difficile eats sorbitol produced by the host during gut inflammation--one way the pathogen benefits from causing disease. nature.com/articles/s4158…
Why some gut bugs feed off our misery and misfortune! and make it even worse.
New paper out today: C. difficile exploits a host metabolite produced during toxin-mediated disease. We show that C. difficile eats sorbitol produced by the host during gut inflammation--one way the pathogen benefits from causing disease. nature.com/articles/s4158…
@LabSonnenburg Congratulations @KaliPruss! You are amazing. 🤩
Nice dissection of C.diff inducing inflammation and prospering metabolically because of the local immune response. Nice job guys!
New paper out today: C. difficile exploits a host metabolite produced during toxin-mediated disease. We show that C. difficile eats sorbitol produced by the host during gut inflammation--one way the pathogen benefits from causing disease. nature.com/articles/s4158…
This is really cool! We also found that VRE "turn on" sorbitol utilization in the GI tract of immunocompromised pediatric patients: pnas.org/content/117/21… We though sorbitol was given exogenously to patients and didn't think about host-derived sorbitol. But we should have!
New paper out today: C. difficile exploits a host metabolite produced during toxin-mediated disease. We show that C. difficile eats sorbitol produced by the host during gut inflammation--one way the pathogen benefits from causing disease. nature.com/articles/s4158…
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