Philippe Lemey's lab @LemeyLab
Tweets sometimes by Philippe Lemey, but usually by other (mysterious) lab members! Thus, opinions, likes and retweets may not express PL's own view 🤫 rega.kuleuven.be/cev/ecv Leuven, Belgium Joined January 2017-
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How fast are viruses spreading in the wild? Check out our latest study now available as a preprint on bioRxiv: biorxiv.org/content/10.110…. A study performed with Paul Bastide, Pauline Rocu, Denis Fargette, Olivier Hardy, @suchard_group, Stéphane Guindon, and @LemeyLab (1/7)
In this study we have analyzed almost 300k SARS-CoV-2 genomes, most of them generated by COVIGEN network which played a central role in strengthening genomic surveillance in Latin America and the Caribbean region. We then inferred the diffusion patterns of Gamma, Lambda and Mu.
In this study we have analyzed almost 300k SARS-CoV-2 genomes, most of them generated by COVIGEN network which played a central role in strengthening genomic surveillance in Latin America and the Caribbean region. We then inferred the diffusion patterns of Gamma, Lambda and Mu. https://t.co/3Et4pb2XJt
Leishmania braziliensis populations in rainforests have low-prevalence single viral lineages, while more dispersed hybrid #parasites show increased #viral #prevalence, #diversity, and #spread. [EVBC involved: @LemeyLab] doi.org/10.1038/s41467…
Here we go again: Mark your calendars for the International #VirusBioinformatics Meeting 2024 and join us in Leuven, May 28-30, 2024! Organized together with @KU_Leuven and @ULBruxelles. Stay tuned for more updates and registration details. #SaveTheDate #ViBioM2024
Proud to announce that our latest collaborative study on the projected decline in European bumblebee populations in the 21st century has just been published in @Nature: nature.com/articles/s4158… - @frsFNRS @ULBRecherche (1/9)
Our latest study, in which we used a phylogeographic approach to investigate the endemic signature of rabies virus (RABV) circulation in Cambodia, has just been published in Molecular Ecology: onlinelibrary.wiley.com/doi/epdf/10.11…
Excited to see our paper now online science.org/doi/10.1126/sc…! By integrating a dataset of ~116,000 Omicron genomic sequences with epi and human mobility data, we investigate the invasion dynamics of Omicron BA.1 into England and its local dissemination at multiple spatial scales.
We got a new preprint up on @biorxivpreprint !! The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2 🦇🦠🗺biorxiv.org/content/10.110…
Our new study on main SARS-CoV-2 variants having spread in New York City (late 2020 - early 2022) has been published in @PLOSPathogens: journals.plos.org/plospathogens/… (1/5)
There's always a first! Check out my first preprint as 1st author! #Leishmania braziliensis hybridization promotes spreading of its endosymbiotic virus (LRV1) @DujardinBiomed @LemeyLab @ITMantwerp biorxiv.org/content/10.110…
Massively parallel #GPU algorithms enable more efficient inference techniques for #phylogenetic models with increasing number of sequences. [preprint co-authored by EVBC members @LemeyLab @suchard_group] doi.org/10.48550/arXiv…
The study that we conducted with Steven Van Borm and Géraldine Boseret from @sciensano on the atypically pathogenic avian influenza H3N1 epidemic that occurred in Belgium in 2019 has just been published in @CDCgov Emerging Infectious Disease journal: wwwnc.cdc.gov/eid/article/29…
Early Genomic #Surveillance and #Phylogeographic Analysis of Getah Virus, a Reemerging #Arbovirus, in Livestock in China. [co-authored by EVBC members @sdellicour @suchard_group @LemeyLab] doi.org/10.1128/jvi.01…
Predicting the evolution of the #Lassa virus endemic area and population at risk: introduced into a new suitable region, the #spread might remain spatially limited over the first decades. [co-authored by EVBC members @suchard_group @LemeyLab @sdellicour] doi.org/10.1038/s41467…
Summary of the #Bayesian #phylogenetic framework and conceptualization of a variety of methods to improve posterior approximations via Markov chain Monte Carlo sampling. #inference [Review co-authored by EVBC members @suchard_group @LemeyLab] doi.org/10.1098/rstb.2…
Very happy to share about our paper on the future risk of exposure to Lassa virus (LASV) with @sdellicour, @LKafetzopoulou, @WimThiery, @AndersenLabTSRI, @LemeyLab, and many others that just got out in @NatureComms a 🧵👇 1/n nature.com/articles/s4146…
Very pleased to see @LiYiqiao92's work on Pestivirus endogenous viral elements (EVEs) in shrew genomes now out in MBE! tinyurl.com/pestiEVE A short thread about the key points:
📢Registration is open for #VGE22! Join a multidisciplinary forum to discuss #genomics and evolutionary analysis of viruses. Meet peers, form collaborative relationships, and share your latest work on #ViralGenomics. 📅Register by 11 Oct: bit.ly/3PxNZPX #globalhealth
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2K Followers 453 Following Phylogeneticist. Work for @trvrb & @nextstrain. Behind RAMPART (@NetworkArtic) & Phandango. PhD Cambridge. New Zealand is home.Overall, we here propose a comprehensive framework that can be used to compare how fast various viruses can spread, and which can be extended to analysis of further datasets: github.com/sdellicour/dis…. If you would like to compare the dispersal capacity and pattern associated (6/7)
How fast are viruses spreading in the wild? Check out our latest study now available as a preprint on bioRxiv: biorxiv.org/content/10.110…. A study performed with Paul Bastide, Pauline Rocu, Denis Fargette, Olivier Hardy, @suchard_group, Stéphane Guindon, and @LemeyLab (1/7)
In this study we have analyzed almost 300k SARS-CoV-2 genomes, most of them generated by COVIGEN network which played a central role in strengthening genomic surveillance in Latin America and the Caribbean region. We then inferred the diffusion patterns of Gamma, Lambda and Mu.
Dispersion patterns of #SARSCoV2 variants Gamma, Lambda and Mu in Latin America and the Caribbean @GrafTiago @Juliana_Leite_ nature.com/articles/s4146…
🧬 Unraveling a virus's genetic blueprint unveils its evolution & origin, crucial for effective intervention. @KU_Leuven's Philippe Lemey is pioneering new computational methods for #genomic analysis. Read 👉 bit.ly/42JHEIu @CORDIS_EU @LemeyLab #Virology #Epidemics
Leishmania braziliensis populations in rainforests have low-prevalence single viral lineages, while more dispersed hybrid #parasites show increased #viral #prevalence, #diversity, and #spread. [EVBC involved: @LemeyLab] doi.org/10.1038/s41467…
Here we go again: Mark your calendars for the International #VirusBioinformatics Meeting 2024 and join us in Leuven, May 28-30, 2024! Organized together with @KU_Leuven and @ULBruxelles. Stay tuned for more updates and registration details. #SaveTheDate #ViBioM2024
Proud to announce that our latest collaborative study on the projected decline in European bumblebee populations in the 21st century has just been published in @Nature: nature.com/articles/s4158… - @frsFNRS @ULBRecherche (1/9)
Our latest study, in which we used a phylogeographic approach to investigate the endemic signature of rabies virus (RABV) circulation in Cambodia, has just been published in Molecular Ecology: onlinelibrary.wiley.com/doi/epdf/10.11…
This study is the result of a long-term collaboration between the @institutpasteur, @PasteurCambodia, @LemeyLab at the @KU_Leuven, and Spatial Epidemiology Lab of the @ULBruxelles. R scripts and related files needed to run the analyses are all available at github.com/sdellicour/rab…
Excited to see our paper now online science.org/doi/10.1126/sc…! By integrating a dataset of ~116,000 Omicron genomic sequences with epi and human mobility data, we investigate the invasion dynamics of Omicron BA.1 into England and its local dissemination at multiple spatial scales.
This is a hugely collaborative effort by researchers from many institutions across the world. Massive thanks for the contribution from all collaborators, and especially @SCauchemez , @jnaraghwani, @suchard_group, @LemeyLab, @arambaut, @EvolveDotZoo, and @MOUGK for their guidance.
We got a new preprint up on @biorxivpreprint !! The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2 🦇🦠🗺biorxiv.org/content/10.110…
ofc all this was put together with some fantastic collaborators! @jepekar @Mahan_Ghafari @afmagee42 Edyth Parker @JL_havens @ArisKatzourakis @TanyaVasylyeva @suchard_group @AliceCHughes @blJOg @robertson_lab @sdellicour @MichaelWorobey Joel Wertheim and @LemeyLab
Congratulations @LemeyLab! Very well deserved!
Collega Philippe Lemey @LemeyLab @KU_Leuven @MIT_KULeuven ontvangt voor baanbrekend werk over virus-evolutie de prestigieuze Francqui-Collen prijs uit handen koning Filip @MonarchieBe Inleiding door voormalig 1st minister & voorzitter Europese Raad Herman Van Rompuy @HvRpersonal
تبريك فراوان به پروفسور فيليپ لِمِي @LemeyLab از بخش ويروس شناسي موسسه رگا دريافت جايزه بلند مرتبه Francqui-Collen از دست پادشاه بلژيك.
Collega Philippe Lemey @LemeyLab @KU_Leuven @MIT_KULeuven ontvangt voor baanbrekend werk over virus-evolutie de prestigieuze Francqui-Collen prijs uit handen koning Filip @MonarchieBe Inleiding door voormalig 1st minister & voorzitter Europese Raad Herman Van Rompuy @HvRpersonal
Vandaag werden Philippe Lemey @LemeyLab en Sarah-Maria Fendt @FendtLab @VIBLifeSciences bekroond met de Francqui-Collen-prijs, uitgereikt door koning Filip 🎖️
Koning Filip reikt "Belgische Nobelprijzen" uit voor onderzoek naar kanker en virusbestrijding vrtnws.be/p.QARo3pNao?t=… #vrtnws
Collega Philippe Lemey @LemeyLab @KU_Leuven @MIT_KULeuven ontvangt voor baanbrekend werk over virus-evolutie de prestigieuze Francqui-Collen prijs uit handen koning Filip @MonarchieBe Inleiding door voormalig 1st minister & voorzitter Europese Raad Herman Van Rompuy @HvRpersonal
We zijn bijzonder trots op Philippe Lemey @LemeyLab die de Francqui-Collen prijs krijgt voor zijn baanbrekend genetisch epidemiologisch onderzoek van virussen nieuws.kuleuven.be/nl/2023/de-fra…
The work I presented at @eeid2023 is on BioRxiv now! We explore two questions: 1) how seasonal bird migration facilitates global virus dispersal, and 2) which avian species are exposed to HPAI H5 clade 2.3.4.4 viruses and where. (1/4) biorxiv.org/content/10.110…
De prestigieuze Francqui-Collen-prijzen zijn toegekend aan twee #kuleuven-wetenschappers: kankeronderzoeker Sarah-Maria Fendt @FendtLab @VIBLifeSciences en viroloog Philippe Lemey @LemeyLab. Proficiat! 👏 nieuws.kuleuven.be/nl/2023/de-fra…