An Introduction to Computational Systems Biology @SysBioBook
by @karthikraman, Taylor & Francis, 2021 routledge.com/An-Introductio… India Joined October 2020-
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The paperback version is now out! routledge.com/An-Introductio… Do check the book out, and also the very nice companion website at ramanlab.github.io/SysBioBook #systemsbiology #networks #teaching
The paperback version is now out! routledge.com/An-Introductio… Do check the book out, and also the very nice companion website at ramanlab.github.io/SysBioBook #systemsbiology #networks #teaching
A nice example to add to the direct search algorithms in Chapter 6!
A nice example to add to the direct search algorithms in Chapter 6!
Delighted to share our paper nature.com/articles/s4370… now out in @ISMEComms: Metabolic modelling to predict microbial interactions in deep sea extreme environment. Wonderful collaboration with @KarthikGeomicro, Zhichao Zhao & led by @dk_rusty @IBSE_IITM @rbc_dsai_iitm @iitmadras
This can be a nice supplement to Chapter 11, for modelling microbial interactions/communities.
This can be a nice supplement to Chapter 11, for modelling microbial interactions/communities.
It's been a joyous ride working with Venkat, @RachitaKKumar and others on this exciting project, as we examine various kinds of interactions in the microbiome, including how various organisms support each other in such extreme environments. Video abstract: wibbitz.com/watch/b186b9b9…
Delighted to share our publication rdcu.be/cQ4ac in @MicrobiomeJ on the International @Space_Station #microbiome with our colleagues at @NASAJPL Venkat @Nitin_NJC and @Ceth_Parker. Ably led by @RachitaKKumar and Sanjaay @IBSE_IITM @rbc_dsai_iitm @iitmadras @iitmbt
Inspired by biological networks, where spare capacity & distributed robustness are ubiquitous, we propose a simple algorithm to identify optimal utilisation of spare capacity, establishing new connections between existing nodes, to achieve a significant increase in robustness
Our work on how dormant spare capacity can be exploited for attack tolerance in complex networks is now online @ Physica A: authors.elsevier.com/a/1f1Kw1M2-2EX… Excellent work by Sai Saranga Das, who started this off as part of a course project! @iitmbt @iitmadras @rbc_dsai_iitm @IBSE_IITM
22 years after the first engineered genetic circuits, biology continues to confound designs. @karthikraman and colleagues @iitmadras #review progress made, including strategies, techniques, and achievements, and highlight gaps for future exploration. pubs.acs.org/doi/10.1021/ac…
Since vax.herokuapp.com is down, this is the next best thing to demo it to students... Any other suggestions??? youtube.com/watch?v=Sxjf4h…
Our recent review in @ACSSynBio on Designing Biological Circuits: From Principles to Applications is now out! pubs.acs.org/doi/10.1021/ac… A very systematic mapping of literature, again resorting to a generalised morphological analysis. Thanks, Debomita and Raghu @iitmadras!
Delighted to share our recent paper on adaptation in biological networks, studied from a #systemstheory lense. Great work by Priyan Bhattacharya and thanks to Dr. Arun Tangirala from @Chemenggiitm: 50+ equations in the paper!😊😊 @iitmadras @IBSE_IITM @iitmbt @rbc_dsai_iitm
Delighted to share our recent paper on adaptation in biological networks, studied from a #systemstheory lense. Great work by Priyan Bhattacharya and thanks to Dr. Arun Tangirala from @Chemenggiitm: 50+ equations in the paper!😊😊 @iitmadras @IBSE_IITM @iitmbt @rbc_dsai_iitm
This paper builds on the nice FSEOF method discussed in §10.3.1 - the tools is available from GitHub github.com/RamanLab/co-FS…
This paper builds on the nice FSEOF method discussed in §10.3.1 - the tools is available from GitHub github.com/RamanLab/co-FS…
Glad to announce my @SWAYAMMHRD @nptelindia course on #Computational #SystemsBiology. Excited to offer it a fourth time—hoping to create a nice learning environment! Enrol@ onlinecourses.nptel.ac.in/noc22_bt03/pre… - This time, we have the textbook & its fully-featured companion site @SysBioBook!
@karthikraman @SWAYAMMHRD @nptelindia @SysBioBook This is an amazing course! Got to learn a lot of new concepts which were presented with lucid explanations.
Very relevant for Chapter 11. Modelling Cellular Interactions #Microbiome #MicrobialCommunities #MetabolicNetworks #Networks
Very relevant for Chapter 11. Modelling Cellular Interactions #Microbiome #MicrobialCommunities #MetabolicNetworks #Networks
Delighted to share the final published manuscript on NetGenes frontiersin.org/articles/10.33… Thanks @senthamizhan__v @ravi_iitm at @IBSE_IITM & @rbc_dsai_iitm & @iitmbt @iitmadras
Delighted to be co-organising this workshop with @rsmsheriff from @emblebi and @IBSE_IITM @iitm — Reproducibility in #SystemsBiology is something that we're passionate about, along with @biomodels! @reprobiomodels @aic_cphms
Delighted to be co-organising this workshop with @rsmsheriff from @emblebi and @IBSE_IITM @iitm — Reproducibility in #SystemsBiology is something that we're passionate about, along with @biomodels! @reprobiomodels @aic_cphms
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