Vas Dumrongprechachan @VAScience
Healthcare Predictive modeling | Omics, Bioinformatics | Mass spec | Neuroscience Pittsburgh, PA Joined December 2017-
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#TeamMassSpec I am new to QE HFX. What do your Hela QC look like for a 75min gradient method with 500ng on EASYspray column? How many PSM and IDs?
My first week of trying to get the Easy nLC to work….
Vas Dumrongprechachan retweeted
We are delighted to share our work, now available in @Nature: nature.com/articles/s4158… Our scoring system can be accessed here: kinase-library.phosphosite.org Coming soon --> the tyrosine kinome and an improved system with many new functionalities & features! #TheKinaseLibrary #KL
Vas Dumrongprechachan retweeted
Can we perform unbiased discovery of endogenous proteins that traffick from one organelle to another in living cells? Learn about our new proximity labeling method, TransitID, here: Full video of ASCB lecture at tinyurl.com/3dste3am
Please come check out our exciting work. Tue Poster - Neuroplasticity and Wed talk - schizophrenia proteomics. Open to chat about cell-type specific subcellular specific proteomics in mice - cortex, striatum, axon development. #ACNP2022 @GoofySynapse @NUro_science @EastCoast55
Please come check out our exciting work. Tue Poster - Neuroplasticity and Wed talk - schizophrenia proteomics. Open to chat about cell-type specific subcellular specific proteomics in mice - cortex, striatum, axon development. #ACNP2022 @GoofySynapse @NUro_science @EastCoast55
Vas Dumrongprechachan retweeted
Hi! Past Travel Awardee here, forced convert to virtual. Check out poster T141 TODAY/TUE if you 💜 neuroplasticity! @VAScience is doing double-time with this 🔥work co-led with @GoofySynapse and talk tmrw from his PD with @EastCoast55. #ACNP2022 @ACNPorg
Hi! Past Travel Awardee here, forced convert to virtual. Check out poster T141 TODAY/TUE if you 💜 neuroplasticity! @VAScience is doing double-time with this 🔥work co-led with @GoofySynapse and talk tmrw from his PD with @EastCoast55. #ACNP2022 @ACNPorg
Vas Dumrongprechachan retweeted
#FragPipe 19 released! New: O-pair site localization for O-glyco. SAINTexpress for interactome scoring. FP-PDV viewer much faster and can show predicted MS/MS spectra. Improved diagnostic ion mining and labile PTM support. PTMProphet works with timsTOF .d. New workflows and more
A new postdoc and my first time attending ACNP. Open to network. Open to any tips and suggestion.
Vas Dumrongprechachan retweeted
Do young and old protein molecules have the same probability to be degraded? @ErikMcshane and @SelbachLab investigated this question in a beautiful & rigorous study: cell.com/cell/fulltext/…
Vas Dumrongprechachan retweeted
We can now obtain subcellular maps for both RNA and protein in the same experiment and show the dynamic changes in location of both in the unfolded protein response. Introducing LoRNA (the LOPIT for RNA) biorxiv.org/cgi/content/sh…
Vas Dumrongprechachan retweeted
This is so cool: nature.com/articles/s4146…
Vas Dumrongprechachan retweeted
Deep learning-based features can be used as evaluation metrics. This MCP paper uses phosphosite probability (MusiteDeep), Delta RT and spectral similarity to benchmark different computational pipelines on phosphopeptide data, including FragPipe vs MaxQuant sciencedirect.com/science/articl…
Excited to be at #ASMS2021. First and foremost is there a good coffee place nearby!
Vas Dumrongprechachan retweeted
“Ascertaining cells' synaptic connections and RNA expression simultaneously with massively barcoded rabies virus libraries,” describes an end-to-end single-cell RNA-seq based system used to reconstruct cell-type-specific synaptic networks at scale. tinyurl.com/2d62ka6s
Vas Dumrongprechachan retweeted
Want to learn how to use R to make nice phylogenetic trees? Want to use programming to conditionally annotate a tree with thousands of tips? Check out my workshop! github.com/agmcfarland/r_…
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