Yuanjie Wei @Yww_96
PhD student in Munschauer group at the @Helmholtz_HIRI . Interested in bioinformatics, RNA biology and virus-host interaction. Joined September 2014-
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fastq-dl: github.com/rpetit3/fastq-… Download FASTQ files from the European Nucleotide Archive ebi.ac.uk/ena or the Sequence Read Archive ncbi.nlm.nih.gov/sra repositories.
Now a big fan of playing RNA structure game 🤣 I like this game !
Now a big fan of playing RNA structure game 🤣 I like this game !
EternaFold, RNA secondary structure modeling trained on Eterna data sets, is now on SBgrid: sbgrid.org/software/title…
Concerning results: We've evaluated Transformer-, Mamba-, and CNN-based architectures, revealing widespread validation flaws in #MedicalImageSegmentation. Many claims of superiority do not withstand strict testing. Time to push for rigor in the field :) arxiv.org/pdf/2404.09556…
Using GPT-4 to write a scientific review article: a pilot evaluation study biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
Predictomes: A classifier-curated database of AlphaFold-modeled protein-protein interactions Interesting PPI virtual screening work based on AlphaFold-Multimer. - SPOC (Structure Prediction and Omics informed Classifier) is a random forest-based classifier that accurately…
vcfgl: A flexible genotype likelihood simulator for VCF/BCF files biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
The choice of whether to use Seurat or Scanpy for single-cell RNA-seq analysis typically comes down to a preference of R vs. Python. But do they produce the same results? In biorxiv.org/content/10.110… w/ @Josephmrich et al. we take a close look. The results are 👀 1/🧵
Delivering and expressing a gene in cells is usually a messy (heterogeneous) process. The messiness interferes with research and applications such as gene therapy. In two new papers, we introduce a toolbox of synthetic miRNA-based control circuits that enable more precise, gene…
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
Online Now: Time-resolved profiling of RNA binding proteins throughout the mRNA life cycle dlvr.it/T5GfWv
A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions A new 5′ untranslated region (UTR) Language Model! - Pretrain the model with mask prediction, 5' UTR secondary strcuture prediction, and minimum free energy prediction - Finetune [CLS]…
𝗙𝗶𝗻𝗮𝗹𝗹𝘆 𝗽𝘂𝗯𝗹𝗶𝘀𝗵𝗲𝗱 𝗶𝗻 @CellCellPress ! How does the brain processes proprioceptive information?🧠 We use a task-driven modeling approach by combining biomechanics 🦾 and neural network modeling💻 to investigate different hypotheses. 1/N cell.com/cell/pdf/S0092…
Excited to share research from @mah_clarence and @NoorsherAhmed in my group to enable deeper analysis of subcellular RNA localization from spatial transcriptomics datasets. link.springer.com/article/10.118…
Minipileup, a straightforward pileup-based multi-sample variant caller. Useful for data inspection or when mainstream callers are not applicable. Initially developed in 2012 as part of htsbox. Now released in a separate repo: github.com/lh3/minipileup
Checking out the release notes for bcftools 2.0 👀 bit.ly/bcftools20
Thrilled to announce our paper in @Nature introducing MUSIC! For the first time, MUSIC enables simultaneous mapping of multiplexed chromatin interactions, RNA-chromatin interactions, RNA-RNA interactions & gene transcription at single-cell resolution. doi.org/10.1038/s41586…
Regulation of pre-mRNA splicing go.nature.com/3BDfNO4 #Review by @MalgorzataRoga1, @clau_vivori & Juan Valcárcel @CRGenomica @UPFBarcelona @TheCrick
Thorned between AP-MS and cofractionation profiling? Say no more! Here we present DIP-MS, a technique combining the specificity of AP-MS with the resolution and throughput of co-fractionation MS nature.com/articles/s4159… Let’s quickly talk about why this is so useful! 1/8
(1/5) Attention, Cellular Imaging Enthusiasts! Thrilled to share that our Analysis "The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions" has been published in Nature Methods (@naturemethods) 🎉🎉🎉 Cell segmentation is a critical component of…
Florene Yacano @YacanFloren
45 Followers 5K Following
Samuel Hume @SamuelBHume
3K Followers 5K Following Scientist, medic. PhD from @UniofOxford, Fellow of @FoulkesFdn. Writing about new innovations in biology and medicine.
siTOOLs Biotech @siTOOLsBiotech
738 Followers 1K Following We drive RNA research with molecular tools. Gene Silencing, rRNA depletion, and RNA Pulldown. #RNAi & #RNApulldown #rRNAdepletion.🧑🏻🔬
Nathan Benaich @nathanbenaich
51K Followers 32K Following solo member of investment staff @airstreet, brewing ambition @airstreetcafe, next token predictor @airstreetpress
Jay Hinton @jay_salsa
6K Followers 5K Following @jayhinton.bsky.social | Salmonella Admirer, Molecular Microbiologist - Salmonella bloodstream infections (iNTS) in African context. Functional genomics. T1D.
Jianmin Wang(王建�.. @Jianmin4drugai
609 Followers 3K Following PhD Student of Yonsei University @yonsei_u; Data Science and AI Empowered Drug Discovery and Biomedicine.
Daniel @_Daniel_Ryan_
184 Followers 232 Following Postdoc @Helmholtz_hiri, Host-Pathogen-Microbiota interactions group. Exploring the complexity of RNA mediated regulation in Bacteroides thetaiotaomicron.
Constantinos Patinios @copa_bio
248 Followers 270 Following Biotech-entrepreneur, passionate for cool and high risk scientific research, PostDoc @BeiselLab, CRISPR-Cas genome engineering, CRISPR-Cas diagnostics
George_Moschonas @MoschonasG
124 Followers 337 Following PhD student @UGent and @VIBLifeSciences. Viruses 🦠 , Proteomics , and innate immunity.
Huibin Lv (Tomas) @huibinlv1992
142 Followers 218 Following Ph.D. in HKU-Pasteur Research Pole. Postdoc in UIUC. I am interested in antibody response after influenza virus infection & vaccination.
John Karijolich @jkarijolich
782 Followers 676 Following Associate Professor, Host-Virus interactions, RNA biology
Spyros Lytras @SpyrosLytras
3K Followers 1K Following Evolutionary Virologist at the @SystemsVirology lab, University of Tokyo 🇯🇵 Molecular Evolution, Phylogenetics, Viral Genomics (he/him) 💻🔬🏳️🌈
Guillaume Hummel @GuillaumeHummel
1K Followers 1K Following RNA biologist and physiologist. I study how plants regulate the expression of invasive and foreign DNA elements, and how it defines tissular identity.
Fred Robinson @RobinsonFr22083
50 Followers 392 Following
Elise Bornet @elise_bor
134 Followers 511 Following PhD student exploring the secrets of RNA in host-microbiota interactions... Single-cell with Bacteroides thetaiotaomicron @WestermannLab 🔬🧪🍺
Apoorva Baluapuri @Pol2Runner
579 Followers 2K Following Walter Benjamin Research Fellow @AdelmanLab @harvardmed; PhD @_WolfLab @Uni_WUE. 482001;632014;600096;97074;02115
Fatemeh Arabi @FatemehArabi4
111 Followers 432 Following Biochemistry PhD Candidate | Amateur Photographer | Painter | Tennis player | Member of UINALab (https://t.co/Td9xZWnKHO)
Yizhu Lin @YizhuLin
100 Followers 282 Following
kruthi rao @_kruthirao_
773 Followers 2K Following Biology, Bioinformatician ,Founder , Equestrian 🐎🧬🌱
Nicolas Fossat @NicolasFossat
248 Followers 361 Following Assistant Professor at University of Copenhagen. Working on RNA, Viruses, the Brain & the Gut.
Caleb Lareau @CalebLareau
3K Followers 1K Following Assistant Professor at Memorial Sloan Kettering. Interested in computational and translational immunology. cat dad.
Mingxi @MingxiWeng
14 Followers 57 Following
Chen Davidovich @DavidovichLab
880 Followers 714 Following Gene repression, RNA and all chromatin things. @MonashUni @EMBLAustralia
Kristopher Brannan @bRaNnAn_LAB
466 Followers 790 Following Assistant Professor, @CPRITTexas scholar, @NINDSfunding scholar, https://t.co/wNrfnaWj0u, Center for RNA Therapeutics, Houston Methodist Research Institute
Katharina Wandera @katwandu
106 Followers 147 Following PhD student at the Helmholtz Institute for RNA-based Infection Research in Würzburg and currently exploring the world of anti-CRISPR proteins 🧬
Jiachuan Bai @BJiachuan
16 Followers 81 Following def Jiachuan( ): print ("PHD student in deep learning\n", "@institutpasteur")
Chandradhish Ghosh @chandradhish
348 Followers 447 Following Researcher at HIRI Würzburg Previously at: MPICI, JNCASR. Chemistry 🌉Biology. RNA Therapeutics and anti-infective drug design 💊
Anuja Kibe @AnujaKibe
135 Followers 98 Following Sometimes science is more art than science, Morty || A̶r̶t̶i̶s̶t̶ Postdoc @Helmholtz_HIRI studying ribosomal frameshifting
Yu Noah Zhang @NoahPieta
670 Followers 5K Following Postdoc in GIS, A*STAR. Alumni of SIBS,CAS on RNA & Bioinformatics. RNAissance. Nullius in Verba
Dinakaran Elango @elangodinakaran
1K Followers 5K Following Plant Breeder, Plant Geneticist, System Biologist
Tiantai Ma @MaTiantai
192 Followers 488 Following PhD student @ucsdbiosciences. Passionate about how RNA disappears. M.S.@UMMicroImmuno. He/Him ⚽️ 🏊🍜
Gregor Rot 🏳️.. @gregor_rot
421 Followers 356 Following Bioinformatics Scientist (RNA!) @Roche Research and Early Development | Full Stack WebDev | https://t.co/dh4nOThgRd | https://t.co/dTDEivlt5a
Prof. Toshi Yokota Ph.. @ToshifumiYokota
5K Followers 5K Following Garrett Cumming @MD_Canada Chair&Prof #Antisense #RNA #CRISPR #RareDiseases #Muscle #Bone #Neurology Trained @UTokyo_News @NCNP_pr @ImperialMed @ChildrensNatl
Morghan Lucas @MorghanLucas
867 Followers 943 Following Co-lead R&D at MGZ Medical Genetics Center Munich • Former PhD student/postdoc in @NovoaLab at @CRGenomica • mastodon @[email protected] • she/her
Sirui @Sirui_Zhang_
39 Followers 135 Following
Avik Mukherjee @AvikMuk64372658
53 Followers 287 Following Research Scholar working on the field of RNA Biology
Sandra Pérez Jiméne.. @SandraPJ02
315 Followers 584 Following Fan of bacteria 🦠 in my free time, being a mountain goat 🐐life motive #GoWithTheFlow 🐳🌊💦
Maria Kiourlappou, Ph.. @kiourlappou
159 Followers 293 Following Senior Comp. Biol. @UniofOxford working with LLMs Lecturer Data Science in Bioinformatics and Medicine @UNIC_GR Prev: PhD @UniofOxford, MSci, BA @Cambridge_Uni
Lexogen @lexogen
2K Followers 3K Following We are the RNA Experts developing technologies for RNA sequencing and providing services.
Daisylyn Senna Tan @DaisyTheBomb
135 Followers 209 Following
ameyasinha @ameyasinha
141 Followers 954 Following
Helmholtz Institute W.. @Helmholtz_HIRI
2K Followers 645 Following The Helmholtz Institute Würzburg (HIRI) combines RNA research with infection biology. #RNAexcellence // Mastodon: @[email protected]
Shiqiang Gao @Gao_SQ
179 Followers 365 Following work on photoreceptors and optogenetics; teach in Physiology; learning German.
Samuel Hume @SamuelBHume
3K Followers 5K Following Scientist, medic. PhD from @UniofOxford, Fellow of @FoulkesFdn. Writing about new innovations in biology and medicine.
Eterna @eternagame
1K Followers 245 Following Eterna is a videogame where you can invent medicine. You solve RNA design puzzles, and your solutions get synthesized and tested by biochemistry & robotics!
Chris Sander aka cscb.. @sandercbio
481 Followers 487 Following Do science that is predictive and use it to improve lives.
Charlotte Bunne @_bunnech
3K Followers 484 Following PostDoc at @Genentech and @Stanford and Incoming Assistant Professor at @EPFL in Computer Science and Life Sciences.
SIB @ISBSIB
8K Followers 876 Following The SIB Swiss Institute of Bioinformatics is an internationally recognized non-profit organization, dedicated to biological and biomedical data science.
Akshay 🚀 @akshay_pachaar
136K Followers 418 Following Simplifying LLMs, MLOps, Python & Machine Learning for you! • AI Engineering @LightningAI • Lead DataScientist • BITS Pilani • 3 Patents
Prof. Nikolai Slavov @slavov_n
14K Followers 264 Following Mentor, scientist & engineer. Director of @ParallelSqTech. Having fun in @SlavovLab with single-cell proteomics & ribosomes. Organizer of @SCP_meeting
Munich RNA Club @MunichRNA
133 Followers 165 Following RNA enthusiasts in Munich! Join our monthly seminar series connecting passionate researchers to discuss exciting RNA science. Sponsored by @RNAsociety.
George_Moschonas @MoschonasG
124 Followers 337 Following PhD student @UGent and @VIBLifeSciences. Viruses 🦠 , Proteomics , and innate immunity.
Lena Steckelberg @LenaSteckelberg
2K Followers 2K Following RNA biologist and virologist @Columbia. Studying how viruses use RNA structure to hijack cellular processes. she/her.
Xingzhao Wen @Irene_xzwen
239 Followers 394 Following PhD candidate in bioinformatics @UCSD. De"code" life. RNA enthusiasts
Nencki Open Lab @nencki
1K Followers 111 Following Developing and spreading tools & ideas in neuroscience
Luka Cicin-Sain (cici.. @CicinSain_Lab
656 Followers 101 Following Viral Immunologist, science enthusiast. Lab focuses on adaptive immunity against CMV and SARS-CoV-2. My views are my own, not necessarily of my employer.
JunMa @JunMa_11
622 Followers 1K Following Research interest: biomedical image analysis and generative AI https://t.co/wJvtQHF3mu opinions my own
Bo Wang @BoWang87
8K Followers 2K Following Assistant Prof. CS,LMP @UofT; CIFAR AI Chair @VectorInst; Chief AI Scientist, @UHN; former PHD, CS @Stanford; opinions my own. #AI #healthcare #combio
Thoma-Kress Lab @ThomaKressLab
173 Followers 190 Following Research Group Retroviral Pathogenesis, BMBF Junior Research Group in Infection Research, @UniFAU, Team M!lk-TV cares about #HTLV, personal views
GfV - Gesellschaft f�.. @GesVirologie
6K Followers 36 Following Wir sind die Fachgesellschaft für Ärzte/Innen und Wissenschaftler/Innen aus dem Bereich der Virologie in und aus Deutschland, Österreich und der Schweiz.
RNA Bioinformatics @JenaRNA
979 Followers 80 Following
Jianmin Wang(王建�.. @Jianmin4drugai
609 Followers 3K Following PhD Student of Yonsei University @yonsei_u; Data Science and AI Empowered Drug Discovery and Biomedicine.
Niccolò Arecco @NccAcc
516 Followers 549 Following Semi-professional Pizza Enthusiast. @EMBO Postdoctoral Fellow at @CRGenomica, @EMBL Alumnus.
Constantinos Patinios @copa_bio
248 Followers 270 Following Biotech-entrepreneur, passionate for cool and high risk scientific research, PostDoc @BeiselLab, CRISPR-Cas genome engineering, CRISPR-Cas diagnostics
MZavolan(Lab) @ZavolanLab
688 Followers 134 Following All sorts of RNAs, processing, localization, translation. @[email protected]
Huibin Lv (Tomas) @huibinlv1992
142 Followers 218 Following Ph.D. in HKU-Pasteur Research Pole. Postdoc in UIUC. I am interested in antibody response after influenza virus infection & vaccination.
EMBL RNA Club @EMBL_RNA_Club
106 Followers 59 Following We are a vibrant community of RNA researchers spread across different @EMBL sites. Supported by @RNAsociety and @lexogen
MRC-Uni of Glasgow Ce.. @CVRinfo
7K Followers 1K Following Fascinated by viruses and the diseases they cause. @The_MRC @UofGlasgow We do #SciComm too! @CVRGoesViral.
Eric Guo @ericyguo
317 Followers 530 Following Associate director and group lead at Vertex Pharmaceuticals. Expertises: Gene Control, Gene Editing, RNA Biology, Genomics, Virus-Host Interaction, Cancer
John Karijolich @jkarijolich
782 Followers 676 Following Associate Professor, Host-Virus interactions, RNA biology
Chonghe Wang @ChongheWang
2K Followers 381 Following Researcher @MIT. Inventor of ultrasound patch technologies. Engineering bio-integrated acoustics for medicine and biology. @ForbesUnder30
Faraz K Mardakheh @FKHM
1K Followers 1K Following Reader in RNA Biology. Team leader at Barts Cancer Institute, studying RNA Binding Proteins in cancer. Funded by MRC, BBSRC, CRUK, and Barts Charity
Jan Gorodkin @jangorodkin
315 Followers 158 Following Professor at University of Copenhagen. Bioinformatics, non-coding RNA, genome analysis
Cell2Cell @Cell2_Cell
304 Followers 96 Following Marie Sklodowska Curie Innovative Training Network (ITN) investigating the impact of cell-to-cell heterogeneity, at chromatin level, on infection & adaptation
Guillaume Hummel @GuillaumeHummel
1K Followers 1K Following RNA biologist and physiologist. I study how plants regulate the expression of invasive and foreign DNA elements, and how it defines tissular identity.
Ryan Flynn @raflynn5
5K Followers 622 Following RNA, Glycans, Space, Renewable Energy, and all technologies making lives more interesting. Now @BCHStemCell + @HSCRB. he/him
Weitzman Lab @WeitzmanLab
2K Followers 163 Following We are a lab working on how viruses interact with cellular processes
HentzeTeam @HentzeTeam
2K Followers 174 Following #RNA loves company. Unconventional RNA-binding proteins. The iron is still hot. Old games. New players. #Research group @embl.
Toronto RNA @TorontoRNA
988 Followers 568 Following A student-led scientific forum for RNA researchers in Toronto, and beyond!
RiboClub @Riboclub_Canada
417 Followers 81 Following Official Account of the RiboClub. Bringing together RNA Biologists from around the world! Seminars | Collaboration | Annual Meeting
Alex Borodavka @AlexBoRNA
1K Followers 2K Following Wellcome Sir Henry Dale Fellow @Cambridge_Uni, A friendly RNA biochemist passionate about fluorescent molecules, viruses and coffee 🇺🇦
Apoorva Baluapuri @Pol2Runner
579 Followers 2K Following Walter Benjamin Research Fellow @AdelmanLab @harvardmed; PhD @_WolfLab @Uni_WUE. 482001;632014;600096;97074;02115
Mushtaq Bilal, PhD @MushtaqBilalPhD
228K Followers 35 Following I simplify the process of academic writing | Helped 5,000+ become efficient academic writers with AI | Work @SyddanskUni | Join 600 using https://t.co/SKfrXx2V5q
Sonja Fernbach @SonjaFernbach
130 Followers 212 Following Virologist @UCPH_Research | postdoc @ScheelLab | interested in RNA virus-host interactions 🧬🧫
Probability and Stati.. @probnstat
34K Followers 334 Following Probability. Statistics. Machine Learning. Data Science.
Matthew Bernstein @Matthew_N_B
1K Followers 1K Following Principal Scientist @ImmunitasTx. Prev @Morgridge_Inst @UWMadison. Interested in computational biology and biomedical data science.
Yizhu Lin @YizhuLin
100 Followers 282 Following
Xinnian Dong @xdong23
906 Followers 0 FollowingedgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and ... biorxiv.org/cgi/content/sh… #biorxiv_bioinfo
🎙️ PODCAST | Could the #H5N1 outbreak jump from cattle into humans? @CVRHutchinson chats to @iansample about how H5N1 jumped from birds to cows, how virologists are sequencing the virus to monitor it and how prepared the UK are for a similar outbreak. theguardian.com/science/audio/…
RNA aptamers are a possible alternative to other approaches (like small molecule inhibitors or monoclonal antibodies) to bind and inhibit target proteins These are synthetic RNA molecules, that fold into specific 3D shapes to bind proteins and modulate function One of the…
Nature research paper: Transient loss of Polycomb components induces an epigenetic cancer fate go.nature.com/3w9lcga
R 4.4.0 to be released today. Significant new feature in the change log caught my attention cran.r-project.org/src/base/NEWS #Rstats "New function pkg2HTML() in tools to create single-page HTML reference manuals for R packages."
Have you ever seen real-time footage of a tumor developing outside a living organism? We are thrilled to announce a new paradigm in ex vivo cancer modelling rdcu.be/dFD2v. Let’s have a quick look!
This is a scary, yet amazing discovery. Cancer can arise without mutations following transient loss of epigenetic gene silencing. nature.com/articles/s4158…
Exciting to see what our discoveries have led to so far!! Lights a 🔥 under us, as well as many other physicians and scientists!
A Welcome to the Era of Genome Editing today @NEJM Overview @G_Q_Daley nejm.org/doi/full/10.10… Casgevy for Sickle-Cell Disease nejm.org/doi/full/10.10… Casgevy for Beta-Thalassemia nejm.org/doi/full/10.10…
fastq-dl: github.com/rpetit3/fastq-… Download FASTQ files from the European Nucleotide Archive ebi.ac.uk/ena or the Sequence Read Archive ncbi.nlm.nih.gov/sra repositories.
This is a good (developing) story of the importance of basic biology research 2019: genome-wide CRISPR and RNAi screens find that loss of the Werner syndrome helicase, WRN, uniquely sensitises cells that have microsatellite instability (MSI - a hallmark of mismatch repair…
I'm excited to announce that I'm part of the team at Xaira Therapeutics! This project has been some time in the making. I'm convinced that generative modelling, and ML for biology more generally, will play a pivotal role in the next generation of therapeutics. 1/2
Please join our next virtual RNA Collaborative Seminar on April 24 at 4PM EST hosted by @YaleRNA! To register: us02web.zoom.us/webinar/regist…
As some of you might know, I have helped cofound this startup with colleagues @WendyKChung and Francesco Lotti focusing on RNA-based therapeutics. We are up and running at Alexandria LaunchLabs on the Columbia Medical Center campus. Now we are hiring #RNA enthusiasts to join!…
Very excited to share that our DELiVR method is now open access published @naturemethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s4159… by @Dorie00 @Rami96614090 @moritz_negwer
See a cool chart on a paper? Just copy the image to GPT-4 and ask for code! Here I stole an idea and implemented a new way to visualize GO enrichment in ShinyGO (bioinformatics.sdstate.edu/go/).
I miss Twitter. X is different.
Heterobifunctional small molecules to modulate RNA function: Trends in Pharmacological Sciences …. Congratulations sandra and hamish (yuquan) and jess! cell.com/trends/pharmac…
FraHMT: A Fragment-Oriented Heterogeneous Graph Molecular Generation Model for Target Proteins @JCIM_JCTC pubs.acs.org/doi/10.1021/ac…
We have a #Postdoc position available to work on #arbobvirus #cellreporter systems. We want to combine this with possible #fellowship applications to develop your own ideas and career. If you're interested, get in touch.
Cool new paper in Cell that ties together two fundamentals of cancer biology: cancer cells have high levels of lactate (due to the Warburg effect), and almost always find a way to inactivate the cell's best tumour suppressor, p53 Zong et al. found that lactate, from the…
Trends for United States
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