Carsen Stringer @[email protected] @computingnature
group leader @HHMIJanelia | diversity + open-science for better science | she/her Mostly on MASTODON: @[email protected], join us! mouseland.github.io Ashburn, VA Joined June 2016-
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Spike sorting with #Kilosort in #python w/ #pytorch + @pyqtgraph ! >>> pip install kilosort[gui] To learn more, check out the docs (kilosort.readthedocs.io/en/latest/ by Jacob Pennington), or watch the talk (youtube.com/watch?v=LTSmoA… by @marius10p )
Spike sorting with #Kilosort in #python w/ #pytorch + @pyqtgraph ! >>> pip install kilosort[gui] To learn more, check out the docs (kilosort.readthedocs.io/en/latest/ by Jacob Pennington), or watch the talk (youtube.com/watch?v=LTSmoA… by @marius10p )
These results seem compelling. But regardless of benchmarking results, Cellpose absolutely is SOTA for diverse applications in the hands of real users and 2nd place isn’t close.
These results seem compelling. But regardless of benchmarking results, Cellpose absolutely is SOTA for diverse applications in the hands of real users and 2nd place isn’t close.
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
Excited to share my PhD work in @pgolshani 's lab designing and building low-cost miniature 2P microscopes with everyone! They cost < $10k USD (even at low production runs), are fitted with 2 on-board SiPM detectors, and are completely open-source! 1/5 biorxiv.org/content/10.110…
Only 2 days left to get your student application in!! #neuroscience #neuroai #deeplearning buff.ly/3PaEQys
Our latest paper with @acnavasolive & @adrubio1999 is out in @CommsBio A machine learning toolbox for the analysis of ripples across species nature.com/articles/s4200… In collaboration w @perpl_lab & @SAbbaspoor we found that AI algorithm trained in 🐁 could be applied to 🙊
I am thrilled to start an Assistant Professor in the Department of Biological Sciences at @DartmouthCollege in July 2024. We will study genetic & neural basis of behavior evolution & how behavior affects evolution. Recruiting talented & enthusiastic scientists to join the lab!
"Towards a simplified model of primary visual cortex" talk in 15 min in *Sala XIV*! #cosyne24 #cosyne2024
"Towards a simplified model of primary visual cortex" talk in 15 min in *Sala XIV*! #cosyne24 #cosyne2024
Very excited to👂about Unsupervised Pretraining in Biological Neural Networks🤓 @marius10p @computingnature @Lin_Zhong_ion At the Geometry & Dynamics of Learning Workshop - A.Gajic @arna_ghosh A.Chadwick @ermgrant @helena_liu24 @smusslick @art_pel_ @rmnpogodin @stefesseM 👀
Check out our lab’s recent work on visual learning and representations at the #cosyne24 #cosyne2024 workshops:
Check out our lab’s recent work on visual learning and representations at the #cosyne24 #cosyne2024 workshops: https://t.co/4FE8p5CpT3
This afternoon at cosyne: 🦖
This afternoon at cosyne: 🦖
📢 Brain enthusiasts, Students & experienced researchers..get excited! Neuromatch Academy's amazing summer courses are back! Unlock the mysteries of the brain in a vibrant learning community. 💥 3-Week Course (July 8-26, 2024): Computational Neuroscience buff.ly/4bZxl7C
Great work by Len Jacob et al, his model (#fMRI➡️#EEG) generalizes well to held out test subjects, making it a useful practical tool for studying the brainwide networks underlying arousal states! (accepted by #cosyne24 #cosyne2024 but Len couldn't attend due to visa reasons)
Great work by Len Jacob et al, his model (#fMRI➡️#EEG) generalizes well to held out test subjects, making it a useful practical tool for studying the brainwide networks underlying arousal states! (accepted by #cosyne24 #cosyne2024 but Len couldn't attend due to visa reasons)
Speaking about #neuroAI , when we look for properties of intelligence in artificial and biological systems, our ultimate goal is generalization. But a big difference between both is how much data they need to extract meaningful information and use it in novel scenarios.
As Neuromatch and Climatematch Academy 2024 approach, we reached out to students and TAs to share their best memories from past editions. We aim to enhance diversity and inclusivity moving forward, so be sure to be there when applications open on March 1st, everywhere on Earth!
In #AI, we often pre-train large models on big datasets with #unsupervised learning then fine-tune them on specific tasks with #supervised learning. These learning algorithms seem to exist in mouse brains too! Lin can't attend #cosyne24 for visa reasons, but see the work here:
In #AI, we often pre-train large models on big datasets with #unsupervised learning then fine-tune them on specific tasks with #supervised learning. These learning algorithms seem to exist in mouse brains too! Lin can't attend #cosyne24 for visa reasons, but see the work here:
1/ Simple question: How do we learn? Answer: From teachers (#supervised). Sure! But we also learn a lot on our own (#unsupervised), and so do our mice. New paper: biorxiv.org/content/10.110… w/ @computingnature @marius10p #NeuroAI #Cosyne24
Worked for me, allowing segmentation of a previously unsegmentable low snr part of an image. Wild.
Worked for me, allowing segmentation of a previously unsegmentable low snr part of an image. Wild.
Kording —-& Lab �.. @KordingLab
42K Followers 4K Following Konrad kording, @Penn Prof, deep learning, brains, #causality, rigor, https://t.co/tTJW05RjpC, https://t.co/qf7ZHxiCUt, Transdisciplinary optimist, Dad, Loves outdoors, 🦖
Patrick Mineault @patrickmineault
19K Followers 3K Following Neuro AI, vision, Python, open science. Senior ML scientist @ Mila. Previously engineer @ Google, Meta. Updates from https://t.co/d0o7cSLC6o, https://t.co/duh0cFwLyw
Kanaka Rajan @KanakaRajanPhD
10K Followers 2K Following Associate Professor at Harvard & Kempner Institute. Applying computational frameworks & ML to decode multi-scale neural processes. Marathoner. Rescue dog mom.
Kay M Tye PhD @kaymtye
32K Followers 993 Following Mom. Neuroscientist. She/Her. BLM. https://t.co/sN3wqA9sHH https://t.co/GgqdGIyJwi
Tony Zador @TonyZador
11K Followers 2K Following Neuroscientist at CSHL. Interests: neuroAI, molecular connectomics, & cortical circuits underlying decisions. Co-founder of Cosyne and NAISys meetings.
Robert Haase @haesleinhuepf
11K Followers 4K Following Image Data Scientist, Lecturer, Training Coordinator @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_, GPUs, LLMs, AI, #openscience, views:mine
Dan Goodman @neuralreckoning
12K Followers 614 Following Computational neuroscientist @imperialcollege. I like to make stuff: @briansimulator @neuromatch. 🐘 @[email protected]
Allen Institute @AllenInstitute
64K Followers 3K Following The Allen Institute is committed to solving mysteries of bioscience — researching the unknown of human biology, in the brain, the cell and the immune system.
Ann Kennedy @Antihebbiann
3K Followers 349 Following Theory of brains and behavior | Assistant Professor at @NUFeinbergMed
Dan Levenstein @dlevenstein
3K Followers 1K Following Neuroscientist, in theory. Studying sleep in 🧠s and 💻s with @tyrell_turing and @apeyrache at Mila/McGill
Blake Richards @tyrell_turing
15K Followers 2K Following Researcher at @mcgillu combining AI and neuroscience. Also on Bluesky (@tyrellturing.bsky.social) and Mastodon: @[email protected].
Nicole C Rust, PhD @NicoleCRust
7K Followers 890 Following Professor @Penn. Memory scientist. Advocate of community-based progress. Writing a book about brain research. What do we want to know?
Prof Aman Saleem (@am.. @Aman_sal
2K Followers 948 Following Neuroscientist tangled in sight & space. Professor at UCL, London. (he/him) https://t.co/8823hopOx8 Follow me on Mastodon: https://t.co/gDCBruBbGI
HHMI | Janelia @HHMIJanelia
27K Followers 508 Following Janelia is a pioneering research center where scientists from many disciplines gather to collaborate on some of science's most challenging problems.
Adam J Calhoun @neuroecology
19K Followers 1K Following I can't imagine smells. Neuro, ecology, behavior, punctuation art. Now: @Meta @RealityLabs, ML for neural interfaces. Prev: @Princeton @SalkInstitute @Intel
Shahab Bakhtiari @ShahabBakht
3K Followers 1K Following || assistant prof @UMontreal || leading the systems neuroscience and AI lab (SNAIL) || @Mila_Quebec || #NeuroAI || vision and learning in brains and machines
Luke Sjulson @lukesjulson
8K Followers 6K Following MD/PhD neuroscientist/psychiatrist. Decision-making, addiction, multi-region in vivo ephys/imaging, developing novel optical methods for spatial transcriptomics
Guido Meijer @guido_meijer
3K Followers 972 Following Neuroscientist at the @DondersInst in the @battaglialab. Prev: @IntlBrainLab. Into serotonin, Neuropixels, memory, and niche science jokes
Etta Howells @ettah
994 Followers 1K Following Senior Editor at Nature Neuroscience. Neuroimaging, cognitive and systems neuroscience. All views my own
Jennifer Hang @JenniferHang13
19 Followers 318 Following Commissioning Editor Journal of Integrative Neuroscience (ISSN 0219-6352, IF 1.8), IMR Press Email: [email protected]
Atilla_Kelemen @Ata_Kelemen
0 Followers 57 Following
Shin Kira @ShinichiroKira
394 Followers 492 Following Interested in how the brain enables generalizations to make decisions in novel situations. Current postdoc in Harvey Lab. Former grad student in Shadlen Lab.
Aelton Araujo @AraujoAelton
44 Followers 269 Following Neuroscientist | PhD Student with @trose_neuro IEECR (UKBonn)
Nicole Cruz-Reyes @nicruzreyes
89 Followers 152 Following MD student at @PonceHealthSU & PhD candidate at @MayoGradSchool #latinainscience 🇵🇷 she/her
@christianendisch @christianendis1
20 Followers 109 Following
Amalya Hakobyan @AmaliaHyan
17 Followers 136 Following PhD student, LMU, Graduate School of Systemic Neurosciences, Neurophysiology Lab.
Cheng-Ting Wang @ctwanggg
0 Followers 24 Following
Homero Esmeraldo @HomeroEsmeraldo
191 Followers 591 Following learning and doing comp neuro. UC San Diego Cogsci PhD student
Sam Duwe @Sam_Duwe
316 Followers 478 Following Boys-dad 👨👩👦👦 | Biochemist with a passion for 🔬 and all things fluorescent. Currently responsible for advanced bioimaging @BIOMED_UHasselt
Hanan Fathima @h_ana_n_
197 Followers 244 Following 4'th year BS MS @IISER_BERHAMPUR | Summer Intern @NCBS_Bangalore | Neuroscience | Wetlab Team '22 @iGEM_iiserbpr @iGEM
Cuong Phi @phicuon4811
9 Followers 140 Following
Francisco C. Marques @_franciscomcm
156 Followers 352 Following PhD student at Laboratory for Bone Biomechanics with @eth_bone, @eth_en working on Correlative Multimodal Imaging approaches
D. Chow @zhudngcho18
7 Followers 95 Following
高乐 @gaole54959076
0 Followers 63 Following
Davide Talamonti @DavidTalamonti
34 Followers 234 Following
Trupthi | ತೃಪ�.. @TrupthiKR
240 Followers 586 Following Trying to understand Delusion 🧠🗯️ Research Assistant @interact_minds | Computational Psychiatry | Delusion | Mind-wandering | Artist 🇮🇳🇩🇪🇩🇰
Prof. Ahmed Moustafa @PsychBigData
138 Followers 96 Following Chief Editor, Discover Psychology (Springer Nature) & Prof, Psychology &Computational Modeling, Bond Uni. #neuropsychology #bigdata #mentalhealth #dataanalytics
Jason @Jason27627351
29 Followers 146 Following
Caitlin Lionkeeper @c_lionkeeper
7 Followers 57 Following
Michael Janeček @NeuroBohemian
117 Followers 312 Following Neuro PhD in the making @neurodev_lab @PittPsychiatry curious how dopamine affects cortico-striatal development. Also trying to understand the US.
Aftab Nadeem @aftabnadeem18
222 Followers 338 Following Scientist interested in #cellbiology #bacterial_toxins and #bacteria_membrane_vesicles. NadeemLab: https://t.co/nhNrdUNADQ #newPI
Gabriel Ocana-Santero @OcanaSantero
113 Followers 178 Following DPhil in Pharmacology / Neuroscience in @UniofOxford, as part of the @Serotonin_h2020 network, investigating the developmental role of serotonin 🐁 🧠 🔬
Michael @IAMichaelNelson
374 Followers 237 Following UW-Madison, Eliceiri lab, BioMedical Engineering PhD student. #QuPath #Microscopy #ImageAnalysis for fun! https://t.co/U0PJcRQ6Zu, https://t.co/EnUBMpxah5 admin! QUAREP-Limi
Lyrical Mastery @cashproof
23 Followers 283 Following
Lucia Sanchez-Ruiloba @LuciaSRuiloba
68 Followers 182 Following
Yang Wu @15tatt
153 Followers 714 Following Music Student at Soochow University in Taiwan, self teaching Neuroscience, Neural decoding and BCI, esport coach(apex legends), wannabe neuroscience phd student
Wenhong @wenhongli
13 Followers 212 Following
Eli Sennesh @EliSennesh
208 Followers 478 Following NHP electrophysiology @VanderbiltU. Predictive coding, probabilistic programming, affective science. Abolish the value function! It's all taxis navigation!
Tanmay Rastogi @TanmayRastogi07
130 Followers 834 Following 👨🎓 Neuroscience student. Interested in psychedelics and philosophy. My tweets are mental notes.
Imaging and Modeling .. @ImodLab
380 Followers 246 Following Imaging and modeling lab headed by C. Zimmer at Institut Pasteur, Paris. #ComputationalBiology#GenomeOrganization #SingleMolecule #Imaging #Deeplearning
Martin Tran @tranmartink
278 Followers 441 Following Grad student in the Elowitz lab @Caltech. Imaging and inferring cell histories in embryos. 🎾 🎹 🏳️🌈 #Embryo21
svi @svi58670452
70 Followers 296 Following
OpenCID @OpenCID
9 Followers 101 Following Explore our online database for backup, archiving, processing, analysis, and sharing of data. Simplify your operations with our all-in-one solution #DMP
Isabel Espinosa Medin.. @Isa_Espinosa_M
599 Followers 208 Following
Mariam Hassan @maraxhass
2K Followers 999 Following Software Engineer For Brain-Computer Interfaces. Computation, Cognitive Architectures, Artificial Intelligence, and Biotechnology. Humans X Artificial Agents
Ruiyang He @he_ruiyang
27 Followers 201 Following PhD Student @ColumbiaBME and @nygenome, B.A. + M.Sci @Cambridge_Uni. Interested in computational methods for single-cell and spatial omics.
Nicolas Panayotis @nico_panayotis
810 Followers 776 Following Group Leader at the Saints-Pères Paris Institute for the Neurosciences #SPPIN | @univ_paris_cite | @CNRS - @WeizmannScience & @univamu alumnus.
Sven Truckenbrodt @ScienceSven
439 Followers 225 Following 🔬🌈 Expansion microscopy afficionado. 🧠 Synapses to connectomics. Lead Scientist Molecular Connectomics @E11Bio. He/Him. Views are my own.
Nishit Srivastava @Nishit24
636 Followers 820 Following @[email protected] Measuring single cell mass and volume-Density regulation. @institutcurie. Alumni @HFSP LTF @Cambridge_Uni @JNCASR
Aleksandra Gavrilova @shura_gav
97 Followers 386 Following Neuroscience PhD candidate @OISTedu exploring cerebellar mechanisms of locomotion adaptation in mice 🧠🐀
Umair Hassan @neuro_engineer
2K Followers 2K Following postdoc @stanford (@kellerstanfordu) | phd with @tobergmann | researching frontiers of neuromodulation & metaplasticity 🇵🇰 🇩🇪 🇺🇸
Kording —-& Lab �.. @KordingLab
42K Followers 4K Following Konrad kording, @Penn Prof, deep learning, brains, #causality, rigor, https://t.co/tTJW05RjpC, https://t.co/qf7ZHxiCUt, Transdisciplinary optimist, Dad, Loves outdoors, 🦖
Patrick Mineault @patrickmineault
19K Followers 3K Following Neuro AI, vision, Python, open science. Senior ML scientist @ Mila. Previously engineer @ Google, Meta. Updates from https://t.co/d0o7cSLC6o, https://t.co/duh0cFwLyw
Kanaka Rajan @KanakaRajanPhD
10K Followers 2K Following Associate Professor at Harvard & Kempner Institute. Applying computational frameworks & ML to decode multi-scale neural processes. Marathoner. Rescue dog mom.
Mackenzie Mathis, PhD @TrackingActions
20K Followers 12 Following Scientist merging adaptive motor control & machine learning | 🐭@deeplabcut 🦓@cebraAI | @ELLISforEurope Scholar | (same @ on bluesky)
Kay M Tye PhD @kaymtye
32K Followers 993 Following Mom. Neuroscientist. She/Her. BLM. https://t.co/sN3wqA9sHH https://t.co/GgqdGIyJwi
Tony Zador @TonyZador
11K Followers 2K Following Neuroscientist at CSHL. Interests: neuroAI, molecular connectomics, & cortical circuits underlying decisions. Co-founder of Cosyne and NAISys meetings.
Robert Haase @haesleinhuepf
11K Followers 4K Following Image Data Scientist, Lecturer, Training Coordinator @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_, GPUs, LLMs, AI, #openscience, views:mine
Dan Goodman @neuralreckoning
12K Followers 614 Following Computational neuroscientist @imperialcollege. I like to make stuff: @briansimulator @neuromatch. 🐘 @[email protected]
Allen Institute @AllenInstitute
64K Followers 3K Following The Allen Institute is committed to solving mysteries of bioscience — researching the unknown of human biology, in the brain, the cell and the immune system.
Ann Kennedy @Antihebbiann
3K Followers 349 Following Theory of brains and behavior | Assistant Professor at @NUFeinbergMed
Dan Levenstein @dlevenstein
3K Followers 1K Following Neuroscientist, in theory. Studying sleep in 🧠s and 💻s with @tyrell_turing and @apeyrache at Mila/McGill
Blake Richards @tyrell_turing
15K Followers 2K Following Researcher at @mcgillu combining AI and neuroscience. Also on Bluesky (@tyrellturing.bsky.social) and Mastodon: @[email protected].
Nicole C Rust, PhD @NicoleCRust
7K Followers 890 Following Professor @Penn. Memory scientist. Advocate of community-based progress. Writing a book about brain research. What do we want to know?
Prof Aman Saleem (@am.. @Aman_sal
2K Followers 948 Following Neuroscientist tangled in sight & space. Professor at UCL, London. (he/him) https://t.co/8823hopOx8 Follow me on Mastodon: https://t.co/gDCBruBbGI
HHMI | Janelia @HHMIJanelia
27K Followers 508 Following Janelia is a pioneering research center where scientists from many disciplines gather to collaborate on some of science's most challenging problems.
Adam J Calhoun @neuroecology
19K Followers 1K Following I can't imagine smells. Neuro, ecology, behavior, punctuation art. Now: @Meta @RealityLabs, ML for neural interfaces. Prev: @Princeton @SalkInstitute @Intel
Luke Sjulson @lukesjulson
8K Followers 6K Following MD/PhD neuroscientist/psychiatrist. Decision-making, addiction, multi-region in vivo ephys/imaging, developing novel optical methods for spatial transcriptomics
Guido Meijer @guido_meijer
3K Followers 972 Following Neuroscientist at the @DondersInst in the @battaglialab. Prev: @IntlBrainLab. Into serotonin, Neuropixels, memory, and niche science jokes
Michael @IAMichaelNelson
374 Followers 237 Following UW-Madison, Eliceiri lab, BioMedical Engineering PhD student. #QuPath #Microscopy #ImageAnalysis for fun! https://t.co/U0PJcRQ6Zu, https://t.co/EnUBMpxah5 admin! QUAREP-Limi
Jiannis Taxidis @JiannisTax
1K Followers 886 Following SickKids Scientist (@SickKidsNews) & Asst Prof at Physiology, UofToronto @physiologyuoft. Hippocampus, learning, memory & beyond
Mariam Aly @mariam_s_aly
11K Followers 395 Following I study brains and sometimes use one. Faculty at @BerkeleyPsych starting July 2024.
Galen Lynch @Galen_Lynch
317 Followers 552 Following Neuroscientist, tool maker, and recent graduate from the lab of Michale Fee studying the neural circuits underlying motor learning and production. He/him.
Umair Hassan @neuro_engineer
2K Followers 2K Following postdoc @stanford (@kellerstanfordu) | phd with @tobergmann | researching frontiers of neuromodulation & metaplasticity 🇵🇰 🇩🇪 🇺🇸
Aleksandra Gavrilova @shura_gav
97 Followers 386 Following Neuroscience PhD candidate @OISTedu exploring cerebellar mechanisms of locomotion adaptation in mice 🧠🐀
Nicolas Panayotis @nico_panayotis
810 Followers 776 Following Group Leader at the Saints-Pères Paris Institute for the Neurosciences #SPPIN | @univ_paris_cite | @CNRS - @WeizmannScience & @univamu alumnus.
Vincenzo Marra @vincenzomarra
873 Followers 1K Following Neuroscience, bioscience techniques, electronics. [email protected]
Niklas Schmacke @niklas_a_s
294 Followers 1K Following Shared PostDoc in Veit Hornung’s lab and Fabian Theis’ lab in Munich. Let‘s go.
Nao Okabe @Nao__Okabe
27 Followers 105 Following Neuroscientist @UCLA, brain repair, motor learning, 2 photon microscope, EEG
Alexandr Kalinin @alxndrkalinin
4K Followers 2K Following Postdoc in ML for Comp Bio @broadinstitute | prev @CUHKSZ & @UMich | PhD in Bioinformatics | @[email protected]
Nancy-Sarah Yacovzada.. @NancyYaco
494 Followers 3K Following Lady of python, machine learning & causality | PhD from @WeizmannScience | expertise in biomedical data science | red wine, spinning, trance music.
Isabel Espinosa Medin.. @Isa_Espinosa_M
599 Followers 208 Following
Luke Remage-Healey @HealeyLab
1K Followers 1K Following @UMassAmherst, Professor, Neuroscience and Behavior, Center for Neuroendocrine Studies. #BlackLivesMatter
Adrian Bondy @ayjreen
746 Followers 1K Following Antifascist. Also a postdoctoral fellow in @brody_lab at @PrincetonNeuro working on the neural basis of decision making.
Stoyo Karamihalev @stoyo_k
345 Followers 769 Following Neuroscientist in the Gogolla lab at the Max Planck Institute of Psychiatry. Looking for emotions in the brain.
Yue Kris Wu @kris_neuro
561 Followers 345 Following Postdoc at the Center for Theoretical Neuroscience at Columbia University
Konstantin Willeke @KonstantinWille
860 Followers 2K Following 🤖 🤝🧠 AI and Neuroscience of Vision. Member of Neuronal Intelligence Team @Sinzlab. PhD @uni_tue, @MPI_IS.
𝐊𝐞𝐧𝐣𝐢 .. @KenjiEricLee
1K Followers 2K Following Ph.D. student in the Chand Lab @BU_Tweets. @NIH_NINDS F31 Fellow. @cientificolatin mentor. Prev. @UW, @AllenInstitute, @UnivPugetSound. From Hawaii.
Theoretical Biophysic.. @TheoBiophysics
3K Followers 883 Following Theoretical Biophysics, Quantitative Biology. Admin @MarcoMauri81 Editor @pintupatra05 @pbrun03 @AvaneeshNarla @ParisSeminar @egarabs @LeoPaccianiMori
Nicolas G.-'BioloGeek.. @Nicolas26538817
2K Followers 2K Following With 10 years of experience in microscopy🔬and analysis💻, I have been navigating the world of #BioImageAnalysis since 2020
Spencer LaVere Smith @Labrigger
4K Followers 3 Following prof at UC Santa Barbara. https://t.co/nj3RtLGy3K Neuroscience, neuroengineering, and computation. Optics, imaging, circuitry. Sharing notes at https://t.co/NhYOb5zygg
Joel Lüthi @joel_luethi
834 Followers 1K Following Head of Research and Development at the BioVisionCenter at the University of Zurich. Board member at Reatch. @[email protected]
Simon F. Nørrelykke @SimonFlyvbjerg
933 Followers 421 Following BioImage analysis and teaching @harvardmed | Previously @ETH, @Princeton, MPI-PKS, @UniofOxford, @uni_copenhagen a.o. |
Antoine A. Ruzette @RuzAntoine
145 Followers 339 Following Associate in Systems and Computational Biology @harvardmed with @seanmegason @simonflyvbjerg | Simulation of cells in 3D and everything-bioimage analysis
Zac Swider @ZacSwider
684 Followers 564 Following
Sreenivas Bhattiprolu @digitalsreeni
2K Followers 80 Following I enjoy teaching and love to solve image processing challenges using python.
Reto Fiolka @RetoPaul
7K Followers 4K Following Optics and history buff. Opinions expressed over Twitter are mine. First generation graduate from @ETH_en .
Aadi Prasad @aadiprasad42
235 Followers 942 Following Incoming PhD student @mitbrainandcog lprev @hdsiucsd masters '24 w @manorlaboratory & @talmop @salkinstitute, bioinfo b.s. '22 @ucsd |comp neuro + deep learning
Hao Yin @HaoYin20
9K Followers 10K Following Cardiovascular biologist, Pickering lab, Robarts Research Institute @WesternU; PhD @UCalgary; BSc @PKU1898 Views are my own Just call me Hao :)
Jacques Augenstreich @augenstreich
297 Followers 463 Following PhD in microbiology, I work on tuberculosis and lipids. Le gras c'est la vie. Hic sunt dracones
André Barros Carvalh.. @AndrBarrosCarv1
406 Followers 830 Following 🇵🇹PhD-student at @Polarity_i3S in 🧭 Cell Polarity 🚦RhoGTPases 🪰Drosophila 🔬Microscopy ⚙️ Mechanobiology || 🔙🇬🇧 @CorderoLab
Andrew Lutas @andrewlutas
510 Followers 429 Following Stadtman investigator at NIH, NIDDK, DEOB. Neuromodulation and motivation section. All views/posts are my own.
Timothée Lionnet @successprocess
2K Followers 3K Following NYU School of Medicine Faculty. We use advanced microscopy technologies to understand gene expression. Opinions my own.
Becca J. Carlson @beccajcarlson
207 Followers 405 Following Associate @FlagshipPioneer • PhD @mit_hst @broadinstitute • Immunology, virology, microscopy, functional genomics
Jesse Aaron @JesseAIC
324 Followers 400 Following Manager at Janelia's Advanced Imaging Center @AICJanelia
Aurélien Barbotin @aurel_barbotin
429 Followers 518 Following Optical engineer, biophysicist. Postdoc in the ProCeD team @INRAE_Micalis studying bacterial membranes.
Johannes Soltwedel @jm_mightypirate
519 Followers 827 Following Physicist and PostDoc @PoLDresden @tudresden_ | Bio-image analysis. Own views.
Kwasi @Olu_GH
2K Followers 3K Following Nerdy Ghanaian, Physicist/Imaging Scientist, Fan of science, food, good storytelling, random arguments and great music. Occasional loudmouth, lover of judo
Peter Sobolewski @psobolewskiPhD
1K Followers 2K Following #Duke #UCSD Alum; Recovering Academic; Research IT @jacksonlab; @napari_imaging core dev; @sci_find Council
Eugene Katrukha 🇺�.. @katpyxa
2K Followers 774 Following biophysics, cytoskeleton and self-disorganization
Brian Northan @truenorth_ia
502 Followers 865 Following Systems design engineer with a focus in algorithm development for data analysis and image processing.
Steve Maren 🐀🧠�.. @StephenMaren
10K Followers 2K Following Behavioral neuroscientist; neural circuits for emotional memory; Distinguished Professor @TAMU. 🐕🏃🏽♂️🎾🎣, he/him.
Toshitake Asabuki @TAsabuki
23 Followers 106 Following Postdoc in Computational Neuroscience @imperialcollege I will start my lab as a RIKEN ECL Unit Leader in Jun @RIKEN_CBS
Sathvik @sathvik_ak
470 Followers 2K Following PhDing @TjianDarzacq @UCB_Biophysics | Biosciences @iitmadras | I like biophysics, synthetic biology, and cats | he/him
@marius10p @naturemethods @computingnature Congratulations guys! Such a wonderful tool… and it's really great to have a resource with all the changes (and even "lesion experiments")
Important listen. The quote on the tweet about "best marksmen in the world wouldn't ..." should have ended "by accident", ie he was saying Israeli snipers wouldn't have made those injuries by accident
🚨Upon his return from Gaza, the president of the World Surgical Foundation says "Genocide was the overwhelming impression that I got" He adds "The world's best marksmen are not gonna shoot a kid in the head twice & in the abdomen" Very harrowing details
@computingnature @pyqtgraph @marius10p Congratulations! Looking forward to trying it out :)
@marius10p @naturemethods @computingnature Congrats, Marius! We've been using KS4 quite a bit recently and it's great. Thank you for implementing in python and for fielding our inquiries!
@marius10p @naturemethods @computingnature Congrats! Looking forward to trying it soon!
A full PyTorch implementation of kilosort is now available and the paper published in @naturemethods . Besides the complete python implementation a lot of work was done towards documentation and accessibility. Congrats to @marius10p , Shashawt, Jacob and @computingnature !
The Kilosort4 paper is now published @naturemethods. We put a lot of work into building and properly documenting all things Kilosort (including for older versions). w/ @computingnature #kilosort paper: nature.com/articles/s4159… code: github.com/MouseLand/Kilo…
@svi58670452 @BoWang87 @naturemethods Yes, and it looks like the CellPose models used for comparison may not have been set up fairly - x.com/computingnatur…
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
The latest version of the spike-sorting algorithm #kilosort (Kilosort4) is now out. Check out its improved performance compared to previous versions, owing to the use of a graph-based clustering approach. @marius10p @computingnature @HHMIJanelia nature.com/articles/s4159…
@computingnature @mlphillips17 A precise, detailed, and dispassionate response. Considering the extent to which cellpose was mishandled to produce a favorable comparison in the Nat Methods paper, the tone and professionalism of this response is something to aspire to.
Neuroscientists will be like: How do we learn to play chess? To find out we trained mice to discriminate moving gratings
Janelia Group Leaders @marius10p & @computingnature have released Kilosort4, the newest version of the spike-sorting software that enables scientists to understand the mountains of data collected from recording the simultaneous activity of 100s of neurons. janelia.org/news/janelia-s…
@computingnature It's not unlike when people publish a new brain organoid protocol, claiming it is better *in their hand* than all other protocols. but then the images in the supplementary figures just showed they failed at repeating other protocols😅
Important response from @computingnature, highlighting the need for unfiltered, automated and reproducible benchmarking frameworks in cell segmentation, especially before claiming SOTA.
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
Daaaaamn! Looks like the Transformers just got served. Game on, Cellpose! 🔥🔬#microscopy #bioimageanalysis
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
I really hope nature methods publishes this.
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
So sometimes the uterus has a region that acts as a pacemaker, and sometimes it doesn't!
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
Transformers are not always all you need...
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
tl;dr 1. Climbing fiber instructive signals are essential for associative cerebellar learning (Marr was right all along 😉) 2. Watch out 👀 for unexpected effects in optogenetic experiments. Not just from stimulation, but also from simple ChR2 expression! biorxiv.org/content/10.110…
As an end-user: cellpose and omnipose are the best segmentation methods I tried (for images of bacteria).
#Cellpose remains the state-of-the-art for cellular segmentation. See our new paper, in response to Ma et al, Nat Methods 2024. Paper: biorxiv.org/content/10.110… Leaderboard results ⬇️⬇️⬇️
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