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Julien Roux (@julienroux.bsky.social on 🦋) @_julien_roux

Bioinformatician in @DepBiomedicine at @UniBasel_en. @isbsib member. Interested in omics data analysis, exp design, data viz @julienroux.bsky.social on 🦋 Basel, Switzerland Joined September 2014
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Julien Roux (@julienroux.bsky.social on 🦋) retweeted
MicrobiomDigest Profile Picture

Elisabeth Bik @MicrobiomDigest

5 days ago

@DefenderOfBasic Let me introduce you to PubPeer and its plugin. Over 200,000 papers commented on (9,500 by me!) and counting. pubpeer.com

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
gen0m1cs Profile Picture

@gen0m1cs 🧬📊 @gen0m1cs

a month ago

This looks great. SCT (i.e., XXY, XYY, XXX chromosome individuals) PheWAS analysis was conducted for disease diagnosis associations.

AJHGNews Profile Picture

AJHG @AJHGNews

a month ago

This looks great. SCT (i.e., XXY, XYY, XXX chromosome individuals) PheWAS analysis was conducted for disease diagnosis associations. https://t.co/NwkzjU6JIp

_julien_roux Profile Picture

Julien Roux (@julienroux.bsky.social on 🦋) @_julien_roux

3 months ago

I'm not posting here anymore, but this is worth an exception! See the thread on 🦋: bsky.app/profile/julien…

medrxivpreprint Profile Picture

medRxiv @medrxivpreprint

3 months ago

I'm not posting here anymore, but this is worth an exception! See the thread on 🦋: bsky.app/profile/julien…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
khodakmoments Profile Picture

Misha Khodak @khodakmoments

11 months ago

🧵 on surprising revelations from our study of specialized foundation models (FMs beyond vision/text): after evaluating dozens of scientific & time series FMs we found that most weren’t even competitive with simple supervised models, some with as little as 513 parameters. 1/n

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
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Christophe Dessimoz @cdessimoz

10 months ago

Find me and other @ISBSIB colleagues on bluesky: go.bsky.app/Ez1tmPh (If you are a SIB member and are missing from the list, please let me know and I will add you).

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
Charlie_Hebdo_ Profile Picture

Charlie Hebdo @Charlie_Hebdo_

11 months ago

🔴 COMPETITION | Charlie Hebdo is launching a cartoon competition on the following theme: mocking God ! Draw your anger at the stranglehold all religions are having on your freedoms. More info 👉 charliehebdo.fr/2024/11/evenem…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
fake_journals Profile Picture

Publishing with Integrity @fake_journals

11 months ago

eLife won’t get an impact factor, says @Clarivate | @RetractionWatch | buff.ly/4hHBlfT

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
AukeHoekstra Profile Picture

AukeHoekstra @AukeHoekstra

11 months ago

BlueSky is still small and a bit of a bubble. But there are many good reasons for being on BlueSky too. It feels almost exactly like twitter but under the hood it has some substantial improvements.

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
ISBSIB Profile Picture

SIB @ISBSIB

11 months ago

🚀Big News! 🚀SIB will host the 25th European Conference on Computational Biology (eccb) in Geneva, Switzerland, from 31 Aug-4 Sept 26!🇨🇭 Save the date and stay tuned for more updates as we get ready for #eccb2026 @ECCBinfo @ISBSIB sib.swiss/news/geneva-to…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
CurrentBiology Profile Picture

Current Biology @CurrentBiology

11 months ago

😶

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
markrobinsonca Profile Picture

Mark R@markrobinsonca@{genomic.social,bsky.social} @markrobinsonca

11 months ago

This is getting exciting. Over 20 abstracts submitted. The committee will be looking at them next week. Looking forward to these discussions. There is still time to submit (due Monday 18th). Google form link: forms.gle/v5FJ21oLcJQokw…

markrobinsonca Profile Picture

Mark R@markrobinsonca@{genomic.social,bsky.social} @markrobinsonca

12 months ago

This is getting exciting. Over 20 abstracts submitted. The committee will be looking at them next week. Looking forward to these discussions. There is still time to submit (due Monday 18th). Google form link: forms.gle/v5FJ21oLcJQokw…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
anshulkundaje Profile Picture

Anshul Kundaje (anshulkundaje@bluesky) @anshulkundaje

11 months ago

This is not at all why we're leaving X. It's become a misinformation cesspool and it's impossible to have thoughtful arguments here any more. Have you tried engaging with any "vaccine skeptics" here? Evidence and facts have no meaning here. It's a pure propaganda engine. 1/

CharlesMBrenner Profile Picture

Charles Brenner, PhD @CharlesMBrenner

11 months ago

This is not at all why we're leaving X. It's become a misinformation cesspool and it's impossible to have thoughtful arguments here any more. Have you tried engaging with any "vaccine skeptics" here? Evidence and facts have no meaning here. It's a pure propaganda engine. 1/

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
fake_journals Profile Picture

Publishing with Integrity @fake_journals

11 months ago

Who reviewed this paper? A few days ago @gcabanac tweeted about a paper that had published a remark that it had been forced to cite irrelevant papers. You can see the tweet here: buff.ly/3UMIguf. We remarked that if it was not so serious, it would be funny. Since…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
SimonFRCox Profile Picture

Simon Cox is on BlueSky @SimonFRCox

11 months ago

Hey followers - if you haven’t moved to Bluesky yet, I really encourage you to try it. It’s MUCH better than Twitter and so many of the people you follow are already there. I’m on SimonFrCox.bsky.social Here’s some tips if you make the move. Hope to see you there.

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
mikemorrison Profile Picture

Mike Morrison @mikemorrison

11 months ago

🚨Announcing new #OpenHardware project to measure traffic patterns in scientific poster sessions (w/anonymous & IRB-safe data). The single most powerful thing we can do to improve poster sessions is create better measures. Details & how you can test/contribute:…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
JEFworks Profile Picture

Dr. Jean Fan @JEFworks

11 months ago

I didn't noticed all these co-first authors because such status is not available/visible on PubMed. It is also not displayed on most journal websites unless you click for more details. I've discussed this issue before on my blog with recommendations: jean.fan/2019/10/20/all… 2/3

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
cshperspectives Profile Picture

Richard Sever @cshperspectives

11 months ago

@srikosuri @mbeisen bioRxiv/arXiv have shown people find ways to pick what to read before such proxies are assigned. Meanwhile, HHMI have shown you can assess people without resorting to those proxies. 2/2

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
maoviedogarcia Profile Picture

MA Oviedo-Garcia @maoviedogarcia

11 months ago

#ReviewLikeATweet #StrangerThings @MDPIOpenAccess @Diagnostics_mdpi 1 art-Round 1 🥇0 words (Lucian Puscasiu) 🥈13 words (Mihai Cristian Dumitrascu) 🥉 26 words (Anonymous) 🗞️ 34 words (Ana Valea) Thorough review of the original manuscript❓ @PubPeer mdpi.com/2075-4418/13/4…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
RTeaUnibasel Profile Picture

ReproducibiliTea UniBasel @RTeaUnibasel

11 months ago

📢 Join us tomorrow for the next invited talk “AI, reproducibility and open science: examples from image processing” by @NeilJCronin84 📆 This Thursday, November 7, 16:30 CET 💻 Registration: eventbrite.com/e/ai-reproduci…

Julien Roux (@julienroux.bsky.social on 🦋) retweeted
SIBTraining Profile Picture

SIBTraining @SIBTraining

11 months ago

📢 Check out the program of @ISBSIB @SIBTraining #bioinformatics #training courses for 2025! 🥳 You will find over 40 scheduled courses, and many more will be added in the coming days and throughout the year. 🚀🧑‍💻at: sib.swiss/training/upcom…

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