ilastik Team and Anna Kreshuk's Lab @ilastik_team
ilastik is an open source toolkit for interactive machine learning. It is developed in Anna Kreshuk's lab at EMBL, where other ML research also happens. Heidelberg, Deutschland Joined December 2017-
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From Images to Knowledge (I2K) is going down @humantechnopole in Milan, Italy, from October 23-25 2024. 🗓️ 🚨Abstract and Workshop submission now OPEN 🚨 forms.gle/E2McVjKU1sAsF9… Invited speakers will soon be announced, but most talks will be selected from your🫵 abstracts!!! 📃
How can machine learning help you to analyze your microscopy images? Find out at the "Deep Learning for Microscopy Image Analysis" course at the @MBLScience in Woods Hole from Aug 21-Sep 5! Applications are due 🚨 April 17 🚨 Read on for more! 👇 mbl.edu/education/adva…
📢 📅 Deadline extended by one week! If you haven't submitted your application to the AI4Life Open Call yet, you have a bit more time now: bit.ly/AI4Life-2nd-op…
We're featuring the @AI4LifeTeam at the @EuroBioImaging #VirtualPub tomorrow. They have been busy in the first 2 years of the project developing a range of awesome tools that make AI solutions for image analysis more accessible for all researchers! Join the event and find out!
We're featuring the @AI4LifeTeam at the @EuroBioImaging #VirtualPub tomorrow. They have been busy in the first 2 years of the project developing a range of awesome tools that make AI solutions for image analysis more accessible for all researchers! Join the event and find out!
Great collaboration between biologists and computer scientists. Need robust 3D nuclear segmentation? In deeper tissue layers with poor nuclear staining? Wide applicability? This and more in our latest paper.. bit.ly/3uG2Brd #PlantScience #PlantBiology #PlantDevelopment
We have a fantastic project in collaboration with the best marine biologists studying weird and beautiful critters with EM and deep representation learning. Please, please, please, apply, or send your best students my way!
We have a fantastic project in collaboration with the best marine biologists studying weird and beautiful critters with EM and deep representation learning. Please, please, please, apply, or send your best students my way!
There is only one place to be October 23-25, and that place is Milan. See you there!
There is only one place to be October 23-25, and that place is Milan. See you there!
Join us for a week of collaborative hacking sessions to enhance the user experience of the BioImage Model Zoo @bioimageio. Meet like-minded experts, learn 🧠, and work together with others 💡👩💻👨🏾💻 Apply now: bit.ly/AI4Life-regist…
So proud! 😄👍: Our international working group published its White Paper with recommendations for an ideal world scenario for sharing imaging data to benefit life sciences arxiv.org/abs/2401.13023 Note: sister paper on FAIR data generation arxiv.org/abs/2401.13022
📣 Call to all life scientists! We're launching today the 2nd AI4Life Open Call! We will support projects in need of #DeepLearning image analysis support. Apply now! ai4life.eurobioimaging.eu/second-open-ca… ⏳Deadline: March 1, 2024 @REA_research #AI #Bioimaging #Imaging #ImageAnalysis
The family at the BioImage Model Zoo @bioimageio just got bigger with the addition of BiaPy 🎉 Learn more about this new member here: ai4life.eurobioimaging.eu/biapy-communit…
“AI under the microscope: the algorithms powering the search for cells” nature.com/articles/d4158…
We want to know what YOU are doing at the intersection of AI and biology! Submit your abstract, we made space for you!
We want to know what YOU are doing at the intersection of AI and biology! Submit your abstract, we made space for you!
(8/9) We're recruiting early testers to try it out! 📣 If you're keen to help us refine this exciting tool, sign up here 👇 🔗 forms.gle/fEnj68Rxut1VUX…
Are you ready for #EESAIBio?🤖🧬 🆕 This inaugural symposium will bring together researchers working at the intersection of #AI and biology to discuss theory, methods, and new application areas.🧑🏻💻 ✍🏻 Submit abstract by 5 Dec! 🔗 s.embl.org/ees24-01 #ArtificialIntelligence
😱📣 Scie[Twitter|X]: I NEED YOUR HELP!!! 🙏 All of you who ever liked a lecture of mine... All of you who liked one of the courses I teach in... All of you I work(ed) with in one way or another... All of you who see my desperation! 😜 PLEASE retweet! 🙏 careers.humantechnopole.it/o/postdoc-in-l…
Love this slide from Svetlana Lazebnik’s talk at the QVCV workshop in S3!
Look how @ICCVConference makes people feel good about reviewing
@NatureCustom Hot off the press: Alliance researchers, @EMBLHeidelberg, @mpi_mr_hd , @UniHeidelberg and @uniklinik_hd interviewed by Nature about the impact of #collaborative and #interdisciplinary research.
Robert Haase @haesleinhuepf
11K Followers 4K Following Image Data Scientist, Lecturer, Training Coordinator @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_, GPUs, LLMs, AI, #openscience, views:mine
Florian Jug @florianjug
7K Followers 2K Following Computer scientist on a life-science mission. Love running and science. Currently looking for what we lost on Bsky and Mastodon(.online) as @florianjug…
Rita Strack @rita_strack
22K Followers 4K Following Scientific editor at Nature Methods. Ph.D. Also at @[email protected] 🔬 All tweets and comments represent my independent views. (she/her)
Uri Manor 💔 @manorlaboratory
14K Followers 9K Following Ass. Prof & Director UCSD Goeddel Family Technology Sandbox; CZI Imaging Scientist; Hard-of-hearing; Follows≠endorse; we ❤️ organelles/actin/cochlea/neurons
Ricardo Henriques @HenriquesLab
15K Followers 6K Following #OpticalCellBiology. Group Leader @IGCiencia and Honorary Prof @LMCB_UCL. #Nanoscopy and #AI for #LifeSciences. #SRRF sensei. #ERCCoG. Dad. Opinions my own
Anne Carpenter, PhD @DrAnneCarpenter
21K Followers 2K Following Discovery in images. Enthralled by science. 5 kids. She. SAB Recursion, Quiver. Founder SyzOnc. https://t.co/CQCHnSAc9M
Pete Bankhead @petebankhead
3K Followers 803 Following Reader @EdinburghUni. Wrote @QuPath & https://t.co/eem8QmCaK8 Views my own, unless I've changed my mind. Then perhaps not even mine.
Jean-Yves Tinevez @jytinevez
5K Followers 1K Following Image analysis, microscopy and software tools for Life Sciences. Facility engineer @ Institut Pasteur
Stephan Preibisch @preibischs
4K Followers 2K Following Open Science Software Enthusiast - Director of Scientific Computing Software at HHMI Janelia - also on Mastodon @[email protected]
Reto Fiolka @RetoPaul
7K Followers 4K Following Optics and history buff. Opinions expressed over Twitter are mine. First generation graduate from @ETH_en .
Gautam Dey @Dey_Gautam
7K Followers 4K Following Evo cell bio of the nucleus | Group Leader @EMBL | prev UCL Stanford NCBS | Editorial @preLights #MBoC #bioRxiv #JCS #ReviewCommons | @wilbe_science | #ASAPbio
Guillaume Jacquemet @guijacquemet
6K Followers 1K Following Cell biologist interested in Actin cytoskeleton and cancer cell invasion. My opinions are my own.
EMBL @embl
67K Followers 979 Following The European Molecular Biology Laboratory drives visionary basic research and technology development in the life sciences. https://t.co/7IVx6E26AO
Jennifer Waters @JenCWaters
6K Followers 419 Following Microscopist builder. Prefers photons over AUs. Director of the Core for Imaging Technology & Education (formally the NIC), organizes/teaches @QIatCSHL course
Euro-BioImaging ERIC @EuroBioImaging
6K Followers 424 Following Providing open access to cutting-edge biological and biomedical imaging technologies, expertise, data and training across Europe.
Campàs Lab @CampasLab
5K Followers 725 Following Physics of Embryonic Self-Organization and Morphogenesis. Tweets by Otger Campàs (Professor, Chair of Tissue Dynamics and Director @PoLDresden)
David Gaboriau @dgaboriau
5K Followers 5K Following Imaging Scientist and Microscopy Specialist at FILM @ImperialCollege Previously FILM facility manager. Dad, Cell biologist, PhD/postdoc @Cambridge_Uni #firstgen
Elisabeth Kugler @KuglerElisabeth
4K Followers 3K Following Science Communicator | Biomedical Image Analyst | Biologist || Director at @Zeeks_Art || #DataScience #SciArt #sciComm #DevBio
Loïc A. Royer 💻�.. @loicaroyer
6K Followers 2K Following Director of Imaging AI & Sr. Group Leader @czbiohub SF #zfish #devbio #zebrahub #SelfSupervised #AI #Lightsheet #Imaging co-creator of @napari_imaging
Ulrike Boehm 🔬👩.. @Ulrike_Boehm
5K Followers 448 Following Optical Scientist & Project Lead at @ZEISS_group | #openscience & #womeninscience advocate | Operates @OptNanoscopy @Women_Research
Mariana Monteiro @Mariana1998000
8 Followers 71 Following
Marek Piprek @PiprekMarek
478 Followers 1K Following MD PhD fellow at @lab_marine @fwo SB grantee VIB-KU Leuven @vib_ccb. Ex @obenaufa & @CarmelietLab
Stig Ove Bøe @Fregatt2
144 Followers 356 Following 🔬 Exploring the Intricacies of Life: Delving into Cell Migration, Architecture, Mechanobiology, Light Microscopy, and Cancer Research! 🌱🧪
Enrico Negri @en_negri
19 Followers 28 Following
Yan @YanEVgene
27 Followers 172 Following PhC in Materials Science interested in 🧬 🧫@JohnsHopkins quasi-protein designer. 2022 @OfficialUoM
Beste Senem Degirmenc.. @BesteSenem
37 Followers 124 Following PhD student at Koc University _ Fastinated by live-cell imaging/cell biology/cell division and everything nice 🌸 #cellbiology #celldivision #membraneproteins
Khushboo Agrawal @Khushboo288
91 Followers 429 Following DST-INSPIRE Fellow RNA biology, Drosophila Genetics, Biomolecular aggregates, Mosquito development
Michael Sars Centre @MSarsCentre
2K Followers 1K Following The Michael Sars Centre, University of Bergen, is an international community of scientists studying the molecular and cellular biology of marine organisms.
Sammy Hansali @crearmentes
33 Followers 196 Following Postbac | Researching bioelectricity @ The Levin Lab, Tufts University Interested in building multi-modal foundation models for biology
Richard D. Paul @3rp3l
87 Followers 438 Following phd student working on bayesian methods in bioimage analysis; @fz_juelich, @hds_lee & currently visiting @helmholtz_ai; left, ecological, sometimes kinda queer
Lucia Sanchez-Ruiloba @LuciaSRuiloba
67 Followers 182 Following
Oscar Maiques @Omaiques
188 Followers 417 Following Lecturer/Group Leader in Digital Pathology Barts Cancer Institute - QMUL Like #digitalpathology #ECM #earlydetection #family #cats #cycling
Meiosis Community @MeiosisResearch
347 Followers 334 Following A place for sharing the stories of the people behind the science of #meiosis
Federico Pecori @FedericoPecori
93 Followers 237 Following Postdoc in @METorresPadilla Lab. Investigating the genome architecture in mouse embryos. https://t.co/uUfDLEio7f
Eugene Katrukha 🇺�.. @katpyxa
2K Followers 774 Following biophysics, cytoskeleton and self-disorganization
Nanoscopy and AI @NanoscAI
15 Followers 89 Following "Nanoscopy and AI for translational biology" lab, led by Christophe Zimmer, in the Rudolf Virchow Center at the University of Würzburg, Germany. @RVZ_Wuerzburg
PIC-STRA CRBS @PICSTRA_CRBS
15 Followers 69 Following Opened in October 2020, this 350 m2 imaging platform provides users with several imaging systems for multi-scale observation of fixed and living samples.
Emilie Delaune @emilie_delaune
13 Followers 67 Following
Mez @MezZ6310
0 Followers 7 Following
Nils Mechtel @nilsmechtel
6 Followers 33 Following PhD student at the AICell Lab, @scilifelab 🧬 | Exploring the intersection of AI and biology to advance whole-cell modeling 🦠💻
RMS @RoyalMicroSoc
7K Followers 548 Following Dedicated to advancing science, developing careers & supporting a wider understanding of microscopy. Take a closer look: https://t.co/i4CQyPE5GC
Greg Jefferis @gsxej
3K Followers 2K Following Neural Circuits and Behaviour in Drosophila @MRC_LMB. PI @flyconnectome @CamZoology and @virtualflybrain. Tweets my own.
Lander De Herdt @DeHerdtL
66 Followers 443 Following
Niklas Schmacke @niklas_a_s
294 Followers 1K Following Shared PostDoc in Veit Hornung’s lab and Fabian Theis’ lab in Munich. Let‘s go.
Gemma Alderton @AldertonBiol
2K Followers 1K Following Deputy Editor, Insights section @sciencemagazine. I handle biology Perspectives and oversee Reviews. I also love birds. And cats. Opinions my own.
Clint Chen @chen_clint90140
4 Followers 174 Following interested in structural biology and biophysics mainly focus on bioAFM
Xiaotian @xiaotianliao
206 Followers 600 Following PhD student @sangerinstitute | Learned a lot @Cambridge_Uni @BostonChildrens @broadinstitute |@MinervaUni Inaugural alum
Avinash Khandelwal @avinashk001
246 Followers 4K Following Researcher- Neuroscience, Connectomics, Fruitfly, Mosquito Business-Politics सुखदुःखे समे कृत्वा लाभालाभौ जयाजयौ । ततो युद्धाय युज्यस्व नैवं पापमवाप्स्यसि ॥
José Arcadio Rodríg.. @josarc
1K Followers 5K Following Associate Professor @uprrp_biology @UPRRP Former Postdoc @UWBiochem with @AnsariLab Follow our lab @theJARMlab
Sanzhar Aitbay @SanzharAitbay
106 Followers 194 Following Bioscientist. PhD student at @Inserm Toulouse. @MSCActions fellow. Mechanobiology - PI3K signaling - PDAC. Interested in next generation in vitro systems.
Leor Ariel Rose @leor_rose
1 Followers 30 Following PhD student at Assaf Zaritsky's lab of computational cell dynamics. Developing methods for analysis and integration of multimodal bioimaging data.
reenak @reenak52086225
255 Followers 415 Following Postdoctoral researcher @Sixt_Lab @ISTAustria. cytoskeleton, running, cycling, art and science enthusiastic. Former @lablappalainen @helsinkiuni
Jenny Sachweh @JennySachweh
443 Followers 1K Following (she/her) PhD student @Beck_Laboratory doing light microscopy and electron tomography to study NPCs.
Yuexuan @Yuexuan_Zhang1
3 Followers 111 Following
Garcia-Mata Lab @RhoPower
880 Followers 1K Following Rho GTPase-centric cell biologist focused on cytoskeleton research, RhoGEFs, RhoGAPs, microscopy, cell migration, invasion and metastasis ♥️🔬and 🚴🇦🇷@utoledo
Emmanuel Bouilhol @EBouilhol
100 Followers 275 Following Computational Biologist PhD #DeepLearning for #Microscopy Decipher the role of TME and MEC in cancers Head & Neck Team Morpheme Climbing, running and jumping
Diego @dshimo_
328 Followers 2K Following If you stare into the abyss, the abyss stares back at you. #blockchain #iot #cybersecurity Mastodon - [email protected]
室生 暁 | 解剖�.. @SatoruMuro
14K Followers 9K Following むろう さとる/解剖学研究者/大学教員/医師/博士(医学)/解剖学YouTuber(Dr.ムック)|医学部在学中に解剖学研究に興味→初期研修医→大学院→大学教員/研究者|骨盤底,膵臓,腎筋膜,肛門管,前十字靱帯|2児の父|研究や解剖学について発信します。https://t.co/Xaemg2T7dK
Simran Gupta @xSimranGupta
53 Followers 2K Following
Pau Formosa-Jordan @PauFormosa
729 Followers 549 Following Biophysicist, Group Leader at MPIPZ. Studying the multicellular dynamics in plants, combining theory and experiments. Also, fascinated by music and dance.
Aftab Nadeem @aftabnadeem18
226 Followers 338 Following Scientist interested in #cellbiology #bacterial_toxins and #bacteria_membrane_vesicles. NadeemLab: https://t.co/nhNrdUNADQ #newPI
YUYU @YUYUCHENG1
151 Followers 3K Following
Archisman Samanta @ArchismanSaman4
170 Followers 2K Following A gut microbiome enthusiast Exploring PhD positions Former @ccmb_csir student Young Professional-II at @ICAR_NDRI
Zheng SHI (师征) @ZS_biophys
2K Followers 905 Following Interested in cell membranes, biomolecular condensates, mechanics, neuroscience. He/him. Views are my own.
Euan Mackay @Mr_Cyph3r
37 Followers 292 Following I like Physics and I like running (both literally and away from my problems). PhD student in Theoretical Biophysics.
Robert Haase @haesleinhuepf
11K Followers 4K Following Image Data Scientist, Lecturer, Training Coordinator @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_, GPUs, LLMs, AI, #openscience, views:mine
Christophe Leterrier @christlet
22K Followers 3K Following NeuroCyto lab PI 🤹🏻 @INP_Marseille @CNRS @univAMU 🧠 Neuronal cell biology 🦠 Super-resolution microscopy 🔬 ➡︎ @[email protected] / http://christlet.bsky.soci
Florian Jug @florianjug
7K Followers 2K Following Computer scientist on a life-science mission. Love running and science. Currently looking for what we lost on Bsky and Mastodon(.online) as @florianjug…
Rita Strack @rita_strack
22K Followers 4K Following Scientific editor at Nature Methods. Ph.D. Also at @[email protected] 🔬 All tweets and comments represent my independent views. (she/her)
Uri Manor 💔 @manorlaboratory
14K Followers 9K Following Ass. Prof & Director UCSD Goeddel Family Technology Sandbox; CZI Imaging Scientist; Hard-of-hearing; Follows≠endorse; we ❤️ organelles/actin/cochlea/neurons
Ricardo Henriques @HenriquesLab
15K Followers 6K Following #OpticalCellBiology. Group Leader @IGCiencia and Honorary Prof @LMCB_UCL. #Nanoscopy and #AI for #LifeSciences. #SRRF sensei. #ERCCoG. Dad. Opinions my own
Anne Carpenter, PhD @DrAnneCarpenter
21K Followers 2K Following Discovery in images. Enthralled by science. 5 kids. She. SAB Recursion, Quiver. Founder SyzOnc. https://t.co/CQCHnSAc9M
Pete Bankhead @petebankhead
3K Followers 803 Following Reader @EdinburghUni. Wrote @QuPath & https://t.co/eem8QmCaK8 Views my own, unless I've changed my mind. Then perhaps not even mine.
Jean-Yves Tinevez @jytinevez
5K Followers 1K Following Image analysis, microscopy and software tools for Life Sciences. Facility engineer @ Institut Pasteur
Stephan Preibisch @preibischs
4K Followers 2K Following Open Science Software Enthusiast - Director of Scientific Computing Software at HHMI Janelia - also on Mastodon @[email protected]
Fabian Theis @fabian_theis
29K Followers 446 Following Computational biologist @HelmholtzMunich, prof @TU_Muenchen & associate PI @sangerinstitute. Dad of 4 and mountain lover. Department news, see @CompHealthMuc
Reto Fiolka @RetoPaul
7K Followers 4K Following Optics and history buff. Opinions expressed over Twitter are mine. First generation graduate from @ETH_en .
Gautam Dey @Dey_Gautam
7K Followers 4K Following Evo cell bio of the nucleus | Group Leader @EMBL | prev UCL Stanford NCBS | Editorial @preLights #MBoC #bioRxiv #JCS #ReviewCommons | @wilbe_science | #ASAPbio
Miki Ebisuya @EbisuyaMiki
8K Followers 828 Following Synthetic developmental biologist at PoL TU Dresden/EMBL Barcelona. Cross-species comparison and manipulation of organoid zoo.
Guillaume Jacquemet @guijacquemet
6K Followers 1K Following Cell biologist interested in Actin cytoskeleton and cancer cell invasion. My opinions are my own.
EMBL @embl
67K Followers 979 Following The European Molecular Biology Laboratory drives visionary basic research and technology development in the life sciences. https://t.co/7IVx6E26AO
Jennifer Waters @JenCWaters
6K Followers 419 Following Microscopist builder. Prefers photons over AUs. Director of the Core for Imaging Technology & Education (formally the NIC), organizes/teaches @QIatCSHL course
Euro-BioImaging ERIC @EuroBioImaging
6K Followers 424 Following Providing open access to cutting-edge biological and biomedical imaging technologies, expertise, data and training across Europe.
David Gaboriau @dgaboriau
5K Followers 5K Following Imaging Scientist and Microscopy Specialist at FILM @ImperialCollege Previously FILM facility manager. Dad, Cell biologist, PhD/postdoc @Cambridge_Uni #firstgen
HHMI | Janelia @HHMIJanelia
27K Followers 508 Following Janelia is a pioneering research center where scientists from many disciplines gather to collaborate on some of science's most challenging problems.
Eugene Katrukha 🇺�.. @katpyxa
2K Followers 774 Following biophysics, cytoskeleton and self-disorganization
Pedro Machado @petermcshade
248 Followers 561 Following
Optical Nanoscopy @OptNanoscopy
4K Followers 802 Following * Thoughts on #imaging, #microscopy and optical #nanoscopy / #superresolution microscopy! * Tweets by @Ulrike_Boehm - Enjoy!
Martin Schätz @SchatzCz
629 Followers 1K Following #BioImageAnalysis at @science_charles & assistant professor at @VSCHT focused on medical signal and image analysis. Spearheading the @CzechBIAS.
Greg Jefferis @gsxej
3K Followers 2K Following Neural Circuits and Behaviour in Drosophila @MRC_LMB. PI @flyconnectome @CamZoology and @virtualflybrain. Tweets my own.
Abbelight @abbelight
4K Followers 5K Following From Microscopy to Nanoscopy Scalable bioimaging solutions and multiple expertises to speed-up your imaging projects
Andreas Kist @anki_xyz
549 Followers 192 Following Prof @UniFAU, AI artist, Neuroscientist, Image Acquisition + Processing specialist, Molecular Biologist, Data Sci+Python teacher, Runner 🏃, Husband+Dad of 2
James Sharpe @_JamesSharpe
2K Followers 61 Following Systems Biologist, Developmental Biology, Head of @EMBL Barcelona
Mihaela van der Schaa.. @MihaelaVDS
8K Followers 420 Following John Humphrey Plummer Professor of Machine Learning, Artificial Intelligence and Medicine @Cambridge_Uni, Fellow @TuringInst
Eric Betzig @Eric_Betzig
1K Followers 17 Following An engineering physicist sometimes masquerading as a biologist or, on one occasion, a chemist. Aspiring astronaut. Nuclear is the way.
Suliana Manley 🔬�.. @SulianaManley
3K Followers 530 Following Professor of physics @EPFL. Resolution and molecule fanatic. This view is all mine.
Bewersdorf Lab @bewersdorflab
3K Followers 574 Following Superresolution microscopy research lab @Yale. Proud purveyors of blinks and donuts.
Shalin Mehta @mattersOfLight
1K Followers 848 Following intrigued by light, logic and life. Platform Leader, Computational Microscopy at CZ Biohub (@czbiohub). Views my own.
Banterle Group @Group_Banterle
227 Followers 131 Following We study how the ultrastructure of macromolecular complexes influences cell physiology, using centrioles as a model paradigm @EMBL
Alan Lowe @quantumjot
982 Followers 679 Following Associate Professor @UCL | Turing Fellow @turinginst | AI for Science | Thoughts my own
Andrew L. Hufton @alhufton
459 Followers 377 Following Inconsistent twitter-user, open science advocate, Editor-in-Chief of @Patterns_CP. Trying out #Mastodon https://t.co/OrU0iDeTr0
Iván Hidalgo Cenalmo.. @IvanHCenalmor
111 Followers 66 Following
GloBIAS @GloBIAS_
335 Followers 86 Following Global BioImage Analysts’ Society, a non-profit association under construction, aims to be a worldwide society for all those interested in bioimage analysis
Antje Keppler @AntjeKeppler
343 Followers 86 Following
Luca Marconato @LucaMarconato2
594 Followers 341 Following Computational scientist at EMBL in the @OliverStegle lab. Deep learning methods and infrastructures for spatial multi-omics data.
Finnish Advanced Micr.. @FiAMNode
506 Followers 276 Following Access imaging and microscopy technologies and services in Helsinki, Turku, and Oulu. For academia and industry users.
Nicole Schieber @NicoleSchieber
319 Followers 492 Following My focus is the world of Electron Microscopy...beautiful, challenging, rewarding and most of all, addictive!
Maurice Lee @Maurice_Y_Lee
6K Followers 2K Following I pipette, build microscopes, & write code | he/him | Biophysics PhD | Developing 3D spatial transcriptomics (MERFISH) in https://t.co/dOvIMg6Gbk @astar_gis
Peyman Milanfar @docmilanfar
67K Followers 263 Following Distinguished Scientist at Google Research. Computational Imaging, Machine Learning, and Vision. Tweets = personal opinions. May change or disappear over time.
Ilaria Testa @IlariaTesta4
3K Followers 1K Following Advanced BioImaging lab at SciLifeLab, KTH Stockholm. Our interest is to develop next generation nanoscopy platforms to advance the life sciences.
Jarod Rutledge, Ph.D. @JarodRutledge1
458 Followers 329 Following Scientific omnivore. Research in longevity, AI, neuroscience, genomics. A jack of all trades is a master of none, but often better than a master of one.
Paul F. Jäger @pfjaeger
715 Followers 293 Following Heading the Interactive Machine Learning Research Group @dkfz and @helmholtz_image. Previously @KIT, @mic_dkfz, and @facebookai.
Marcelo Zoccoler @zoccolermarcelo
440 Followers 401 Following Bio-image researcher. PhD in Biomedical Engineering. Python and image processing enthusiast.
Jemima Burden @JemimaBurden
1K Followers 1K Following Electron microscopist @LMCB_UCL @HealthUCL who loves answering biological questions using EM #electronmicroscopy #CLEM #volumeEM 🔬🔬😄#workingmum she/her
Manan @mananlalit
368 Followers 3K Following
Felix Mikus @F_Mikus
386 Followers 566 Following PhD Student with @Dey_Gautam @embl. Mostly microscopy of fungi, plankton, and protists - expand then all! Views my own
Alex hego @hego_alexandre
311 Followers 192 Following Microscopist and image analyst at GIGA - Uliege, Belgium 🇧🇪 passionate by life sciences, geeky father of 3
Stein Aerts @steinaerts
4K Followers 653 Following Computational biologist interested in deciphering the genomic regulatory code | Director https://t.co/tdfwR4ZJdY
BioImage Archive @BioimageA
200 Followers 0 Following The BioImage Archive at EMBL-EBI stores and distributes biological images that are useful to life-science researchers.
Jeremy Howard @jeremyphoward
222K Followers 5K Following 🇦🇺 Co-founder: @AnswerDotAI & @FastDotAI ; Hon Professor: @UQSchoolITEE ; Digital Fellow: @Stanford
Drug Monkey @drugmonkeyblog
9K Followers 239 Following
Oane Gros @GrosOane
341 Followers 299 Following Analyzing and visualizing images 🪱 they/them 🏳️⚧️ | IPA: ˈoːnə ɡrɔs
Global BioImaging @GlobalBioImage
3K Followers 255 Following The international network of cutting-edge bioimaging facilities and communities
Weize Xu @Nanguage
163 Followers 693 Following PhD student | Bioinformatics | Image processing | Software development
Britta Velten @BrittaVelten
918 Followers 242 Following Tenure-Track-Professor for Multifactorial Data Analysis and Machine Learning in the Life Sciences @UniHeidelberg @COSHeidelberg & IWR
Lior Pachter @lpachter
44K Followers 2K Following Bren Professor of Computational Biology @caltech. Blog at https://t.co/FFQzhEsmhi. Tweets represent my views, not my employer's. #methodsmatter
Bernhard Schölkopf @bschoelkopf
14K Followers 60 Following
Julio Saez-Rodriguez @JulioSaezRod
2K Followers 375 Following Computational Biologist @UniHeidelberg, co-director @DR_E_A_M challenges. Low-activity personal account, mostly retweets from @saezlab
Saez-Rodriguez Group @saezlab
5K Followers 628 Following Account of the Saez-Rodriguez lab at Heidelberg University Lab members tweet about our news, activities & publications
Valentina Boeva @val_boeva
898 Followers 156 Following Assistant professor at the Department of Computer Science
Žiga Avsec @Avsecz
1K Followers 521 Following Research scientist at @GoogleDeepMind. Previously PhD student @gagneurlab working on deep learning methods for genomics.
Joel Lüthi @joel_luethi
832 Followers 1K Following Head of Research and Development at the BioVisionCenter at the University of Zurich. Board member at Reatch. @[email protected]
Stefania Marcotti @lankylaste
358 Followers 524 Following Data and image analysis for all things bio | Computational tinkerer | Researcher | @stramerlab | @MIC_KCL - views and typos all mine -
I can't quite find the words to say how honored I feel to be named @ABRF's Mentor of the Year - it is far and away the proudest moment of my scientific lifetime. I feel incredibly privileged every day to get to work with an amazing team of brilliant, hard-working scientists (1/3)
I'm not a big fan of productivity hacks, I think the best thing you can do it just sit down, focus, and work on your shit. But I've been doing something for a couple of years now that has been life changing for me as someone running a medium sized lab, here's a 🧵about it 1/
Had a great time talking about science and challenges while having fun 🤩
Group and Facility Retreat 2024 - I’m sooo lucky to be working with this colorful bunch! 🤩 Thank you all for being awesome y’all!!! And… spoiler: more jobs will open over the next months! 😉 @humantechnopole
@imweio has introduced the ecosystem built around @bioimageio within AI4Life, including Hypha, BioEngine, the @bioimageio ChatBot... at the Microscopy data analysis @EBItraining course
Dominik Kutra from @ilastik_team is guiding a practical session on using ilastik for #ImageAnalysis tasks during the @EBItraining course microscopy data analysis. His top tip: For any #ImageAnalysis questions, be sure to check out image.sc! 🖥️🔬
Less than 24h for an exciting exercise that says "Load, use and fine-tune models from @bioimageio using #DL4MicEverywhere... and export them back to the #BioImageModelZoo format to reuse them in @ilastik_team @deepImageJ @Icy_BioImaging let's see how optimistic this can be 😎
🔬💻 The @EBItraining virtual course "Microscopy data analysis: machine learning and the BioImage Archive" starts today! The week comes packed with insights into #ZeroCostDL, @BioimageA, AI4Life tools, and more!
I'm excited to share our new project at the @focalplane_jcs webinar on Thurs! Microtutor is an interactive remote imaging education platform, integrated into the @GlobalBioImage training portal. @annaphoton, @sci_doodles & I are leading a team of collaborators including...(1/n)
Who said scientists don’t lead exciting lives?!
We started releasing the first chapters of our Geometric Deep Learning book and the accompanying slides from the corresponding Oxford and Cambridge courses.
After 3 years, it's time for us to start sharing the chapters of the GDL book! ❤️ Also included: companion slides from our @Cambridge_Uni & @UniofOxford courses 🧑🎓 Chapter 1 is out **now**! More to follow soon 🎉 geometricdeeplearning.com/book 📖 @mmbronstein @joanbruna @TacoCohen
ScaleFold: Reducing AlphaFold Initial Training Time to 10 Hours arxiv.org/abs/2404.11068
The resilience of Ukrainian scientists Cell Systems asked Ukrainian scientists how they have been able to persist since the full-scale invasion of their country by Ruzzia. Incl a piece by Svitlana Dekina from @EMBLHeidelberg doi.org/10.1016/j.cels…
1/n Interested in large-scale foundation models for single-cell and spatial transcriptomics data and curious about using them to enrich your dissociated dataset with spatial context? Happy to share our preprint “Nicheformer: a foundation model for single-cell and spatial omics”.
Excited to share Nicheformer! Led by @Alejandro__TL & @AnnaCSchaar, Nicheformer is a foundation model for single-cell & spatial omics. Its innovation is going beyond disassociated analysis to capture & predict local tissue context at single-cell level. biorxiv.org/content/10.110…
We are looking for a light microscopy specialist to support the Advanced Light Microscopy Facility (ALMF) @embl in Heidelberg. embl.org/jobs/position/… @GerBI_GMB @BioImagingUK @EuLiMI1 @DBioimaging @EuroBioImaging @Fr_BioImaging @GlobalBioImage
Attending the EMBO|EMBL Symposium #EESMechanobiology as the whole family with @JakubSumbal and our 👶. We are grateful for the @embl facilities, such as the nursing room and changing tables, that made this possible. Little things - huge impact! 🔬👶🍼 #ScienceFamily
In 2021, we published nnU-Net addressing an ongoing bias towards novel architectures in medical image segmentation. Now, 3 years later, we observe that this innovation bias prevails, and - despite recent claims - scaled U-Net variants remain SotA, at least on current benchmarks.
Concerning results: We've evaluated Transformer-, Mamba-, and CNN-based architectures, revealing widespread validation flaws in #MedicalImageSegmentation. Many claims of superiority do not withstand strict testing. Time to push for rigor in the field :) arxiv.org/pdf/2404.09556…
Good news everyone: we extended the deadline for applications by two weeks until May 1st! mbl.edu/education/adva…
How can machine learning help you to analyze your microscopy images? Find out at the "Deep Learning for Microscopy Image Analysis" course at the @MBLScience in Woods Hole from Aug 21-Sep 5! Applications are due 🚨 April 17 🚨 Read on for more! 👇 mbl.edu/education/adva…
📢'The World Is Your Oyster' is for those who are born in global north countries--don't experience visa bureaucracy & emotional burden that non-white global south scholars do. Citizenship is a privilege that we need to recognize in the academe. 1/n nature.com/articles/d4158…
We had the pleasure of hearing all about @florianjug's many endeavors, ranging from work in the @jug_lab to @AI4LifeTeam, in a special seminar!
If you are interested in learning or showcasing the latest development in how to convert your microscopy images into biological knowledge, the I2K conference is the place you don't want to miss. Submit your presentation abstract or workshop proposal: forms.gle/E2McVjKU1sAsF9…
From Images to Knowledge (I2K) is going down @humantechnopole in Milan, Italy, from October 23-25 2024. 🗓️ 🚨Abstract and Workshop submission now OPEN 🚨 forms.gle/E2McVjKU1sAsF9… Invited speakers will soon be announced, but most talks will be selected from your🫵 abstracts!!! 📃
Excited to introduce DinoBloom🦖🌺, an open-source foundation model family (Vit-S to G) for general cell embeddings in #hematology🩸 Trained w mod. #DINOv2 on 13 datasets w 380,000+ WBC images of blood & bonemarrow. Evaluated on AML subtype & cell classification (knn, lin probe)
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