napari🔬 @napari_imaging
napari is a fast, interactive, multi-dimensional image viewer for Python. other site: https://t.co/85gUrdN9Lv napari.org (Melbourne+SanFrancisco)/2 Joined October 2019-
Tweets1K
-
Followers6K
-
Following133
-
Likes1K
I wrote a small interactive application in @napari_imaging allowing us to specify in 3D the positions and orientations of each γTuSC of interest. Localised reconstruction then significantly improved the density of the unidentified coiled coil protein! github.com/alisterburt/na…
Had a great attendance at our intro to image analysis workshop at @KingsCollegeLon this week, demonstrating how to get started with @FijiSc, @ProjectJupyter and @napari_imaging for #BioImageAnalysis Watch this space for announcements on future workshops!
Stem cell colonies from @PertzL 🤝 interactive data visualisation in @napari_imaging. Segmentation, tracking, single cell signalling states... So much fun to explore and search for patterns this way
Hey, #image analysts! Thanks to the #EuroBioImaging @nfdi4bioimage "Image Analysis in Galaxy" hackathon, new tools & resources are available in the cloud ☁️via @galaxyproject. Find out what's available ⤵️@napari_imaging @CellProfiler Cell Pose & more! eurobioimaging.eu/news/new-resou…
Hi folks! Want to learn more about contributing to napari? Core developer @WVierdag will be leading the second #naparicodecafe in just 6 short hours! (1pm SF/4pm NYC/9pm Paris/7am Melbourne) 🤓🧑💻☕️ Details at forum.image.sc/t/napari-code-…!
Attention organelle enthusiasts!! I am beyond thrilled to introduce Nellie: a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy. paper: arxiv.org/abs/2403.13214 github: github.com/aelefebv/nellie 🧵1/N
Come to this week’s community meeting! - demo a cool thing you're doing with napari 😍 - ask for help doing something 🙋 - remind us about your PR that's sat there for weeks 😅 Next meeting is in ~16h, Mar 20 9am Paris / 5pm Tokyo / 7pm Melbourne. See napari.org/stable/communi…
Finally managed to spend some time on napari-live-recording: updated documentation and merged changes for the image processing pipeline. You can check the plugin here: github.com/jacopoabramo/n… @napari_imaging
Job alert! I am looking to recruit a bioimage analyst to work with us the Image Analysis Hub core facility of the @institutpasteur It is a full time, permanent position as a research engineer, working onsite. Some details and links below ⬇️ Please forward to your networks!
Amazing😎Hematoxylin/Eosin-Mimetic NonDestructive 3D Histology of FFPE archived tissue TOPRO3+Eosin➡️ Optical clearing with ethyl cinnamate➡️ Light-sheet microscopy➡️ Converted to HE-like image with FalseColor-Python➡️ Bioimage analysis with Napari @napari_imaging What's the…
Curious about contributing to napari? Core developer @WVierdag is leading our all-new napari code cafés! (™️) The first one is this Wednesday at 8pm CET (Paris) time. Improve our screenshots to be pixel perfect, or turn your own idea into reality! Details: forum.image.sc/t/napari-code-…
Interested in microglia analysis from light microscopy data, but think the standard ways of segmentation are missing things? Online now is our manuscript where we created a new tool called PrestoCell at PlosONE journals.plos.org/plosone/articl…
Processing neuroanatomy data in @napari_imaging? You may find brainrender-napari (github.com/brainglobe/bra…) useful. We're slowly porting the original brainrender to napari to provide a consistent neuroanatomy data analysis and visualisation environment.
In case you forgot, we are still holding community meetings! All are welcome! - demo a cool thing you're doing with napari 😍 - ask for help doing something 🙋 - remind us about your PR that's sat there for weeks 😅 Next meeting in ~12h, 11:30am EST. See napari.org/stable/communi…
I created a simple, but very useful @napari_imaging plugin for ImageJ users. You can draw shapes as if you are using the ImageJ ROI manager, and convert them into a standard napari Shapes layer. github.com/hanjinliu/napa…
Naparistas, or anyone who does image analysis in Python — reminder — we want to hear from you! Please fill in our survey, which will close at the end of Feb 23 Anywhere on Earth! What do you *really* have better to do on Friday night, hmmm? 😂 Thank you! bit.ly/napari-survey-…
Drumroll, Please 🥁 🥁 🥁 #QuansightLabs’ @melissawm is now a core developer on @napari_imaging, a graphical user interface and a plugin ecosystem for various image analysis tasks used by scientists daily. 🧪 Outstanding work, congratulations, Melissa! 🎉 #OpenSource #Python
Mark your calendars! 🗓️ 🖊️ I2K (From Images to Knowledge), the conference where bioimage methods research meets research software engineering meets biology, will welcome you at @humantechnopole in Milan from Oct. 23rd to 25th! Influence the agenda here: forms.gle/v5brzZ9RnTU4Wv…
Robert Haase @haesleinhuepf
11K Followers 4K Following Image Data Scientist, Lecturer, Training Coordinator @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_, GPUs, LLMs, AI, #openscience, views:mine
Christophe Leterrier @christlet
22K Followers 3K Following NeuroCyto lab PI 🤹🏻 @INP_Marseille @CNRS @univAMU 🧠 Neuronal cell biology 🦠 Super-resolution microscopy 🔬 ➡︎ @[email protected] / http://christlet.bsky.soci
Rita Strack @rita_strack
22K Followers 4K Following Scientific editor at Nature Methods. Ph.D. Also at @[email protected] 🔬 All tweets and comments represent my independent views. (she/her)
Uri Manor 💔 @manorlaboratory
14K Followers 9K Following Ass. Prof & Director UCSD Goeddel Family Technology Sandbox; CZI Imaging Scientist; Hard-of-hearing; Follows≠endorse; we ❤️ organelles/actin/cochlea/neurons
Ricardo Henriques @HenriquesLab
15K Followers 6K Following #OpticalCellBiology. Group Leader @IGCiencia and Honorary Prof @LMCB_UCL. #Nanoscopy and #AI for #LifeSciences. #SRRF sensei. #ERCCoG. Dad. Opinions my own
Florian Jug @florianjug
7K Followers 2K Following Computer scientist on a life-science mission. Love running and science. Currently looking for what we lost on Bsky and Mastodon(.online) as @florianjug…
Stephan Preibisch @preibischs
4K Followers 2K Following Open Science Software Enthusiast - Director of Scientific Computing Software at HHMI Janelia - also on Mastodon @[email protected]
Jean-Yves Tinevez @jytinevez
5K Followers 1K Following Image analysis, microscopy and software tools for Life Sciences. Facility engineer @ Institut Pasteur
Reto Fiolka @RetoPaul
7K Followers 4K Following Optics and history buff. Opinions expressed over Twitter are mine. First generation graduate from @ETH_en .
Jennifer Waters @JenCWaters
6K Followers 419 Following Microscopist builder. Prefers photons over AUs. Director of the Core for Imaging Technology & Education (formally the NIC), organizes/teaches @QIatCSHL course
Pete Bankhead @petebankhead
3K Followers 801 Following Reader @EdinburghUni. Wrote @QuPath & https://t.co/eem8QmCaK8 Views my own, unless I've changed my mind. Then perhaps not even mine.
Anne Carpenter, PhD @DrAnneCarpenter
21K Followers 2K Following Discovery in images. Enthralled by science. 5 kids. She. SAB Recursion, Quiver. Founder SyzOnc. https://t.co/CQCHnSAc9M
Guillaume Jacquemet @guijacquemet
6K Followers 1K Following Cell biologist interested in Actin cytoskeleton and cancer cell invasion. My opinions are my own.
Ulrike Boehm 🔬👩.. @Ulrike_Boehm
5K Followers 448 Following Optical Scientist & Project Lead at @ZEISS_group | #openscience & #womeninscience advocate | Operates @OptNanoscopy @Women_Research
Maurice Lee @Maurice_Y_Lee
6K Followers 2K Following I pipette, build microscopes, & write code | he/him | Biophysics PhD | Developing 3D spatial transcriptomics (MERFISH) in https://t.co/dOvIMg6Gbk @astar_gis
Joachim Goedhart @joachimgoedhart
10K Followers 1K Following Scientist + Teacher @UvA_Amsterdam | Cells | Molecules | Microscopy | Fluorescent Proteins | Biosensors | Open Science | dataViz | R | web apps
Estibaliz Gómez de M.. @gomez_mariscal
2K Followers 923 Following Mathematician facing biomedical image processing challenges 💻🔬🧚♂️🦄 @HenriquesLab @IGCiencia Also fighting the p-value dichotomy ⚖️
CZI Science @cziscience
27K Followers 573 Following Supporting the science and technology that will make it possible to cure, prevent, or manage all disease by the end of the century.
Benedict Diederich @beniroquai
2K Followers 500 Following Necessity is the mother of invention or "Not macht erfinderisch"
James Conway @DrJamesConway
330 Followers 495 Following Research Fellow (Bartels Lab) @UKDRI @UCL. Formerly of Kramer lab @PlymUniMedicine . Views are my own
Electronicsseeker @libertarian108
6 Followers 912 Following
Ian C @Ian_Coccimi
74 Followers 134 Following I'm an optimist, but not idly so. The world is great, but only if we create it to be.
FungLabMeiosis @FungLabMeiosis
16 Followers 285 Following The Fung Lab at UCSF studies the mechanisms of meiotic chromosome pairing and synpasis using yeast genetics, live cell imaging, and computational modeling
JTrendBio @JTrendBio1
321 Followers 625 Following Correlative imaging post doc @OceanEarthUoS. Love CT, image analysis, 3D modelling!! PhD in 🦴 ➡️ Post-doc in 🪸
Jak Grimes @GrimesJak
183 Followers 267 Following Fluorescence Imaging Specialist | @miltenyibiotec | Light-sheet | Spatial Biology | Multi-modal imaging | PhD with @DavideCalebiro lab
Olatz @Olatznv
48 Followers 124 Following 5’3’ like DNA 🧬 bioimage analysis enthusiast & Cellular Immunology PhD Student @ Dan Davis lab, Imperial.
Arshad Kalliyil @ArshuKalliyil
129 Followers 714 Following Junior Research Fellow @AshokaUni with @SRoy_Lab | Alumnus of University of Hyderabad.
zx m @zxm1453020
2 Followers 48 Following
Jishuai MIAO @JishuaiM88686
22 Followers 583 Following
Ivelina Petrova @ivelinapetrovaX
32 Followers 785 Following Industrial Management and development Master Degree and Architect in Architecture [email protected] [email protected] [email protected]
Tasour @TasourR
38 Followers 334 Following Error code: 0xF2024 (Lost in the virtual world). Backup failed. All data lost.
SEIRIKI @seiriki_
5 Followers 70 Following 脳の中のblue spotの回路と機能の関係について研究している薬理学・神経科学の研究者です。AAV使い兼SPIM使いへの転身めざして奮闘中。助教。一児の父。
Akumtiba @akumtibajamir
4 Followers 11 Following Exploring the intersection of Deep learning 🧠 and MEMS technology 🌐. Passionate about unlocking innovation in AI and sensor networks. 🚀
Camelia C @stenellazuli
3 Followers 39 Following I'm a bitch I'm a lover I'm a sinner I'm a saint... I have no idea what I'm doing
Oscar Maiques @Omaiques
188 Followers 417 Following Lecturer/Group Leader in Digital Pathology Barts Cancer Institute - QMUL Like #digitalpathology #ECM #earlydetection #family #cats #cycling
Teifion Luckett @TeifionLuckett
22 Followers 59 Following PhD student (Mielgo Lab) investigating the immune system in metastasis 🔬 Molecular biologist & bioinformatician 💻 Windsurfing 🏄 climbing 🧗 adventuring 🏞️
Oliver Czarnecki @OliverCzarnecki
4 Followers 124 Following Cell Biology. Microscopy. β-cell function. Mountaineering. Doctoral Researcher @LickertHeiko @HelmholtzMunich
david @david_kochman
602 Followers 2K Following Director R&D @novoronbio. Working hard to cure paralysis. husband to @giswellman. father to Jonah and Luca. my tweets automatically delete. he/him
Uddin @Uddin12101998
0 Followers 13 Following
Marc Valer @MarcValerSerra
10 Followers 38 Following
Kenneth Bowitz Larsen @BowitzLarsen
11 Followers 89 Following
Hugh @HughABrown
130 Followers 83 Following
Tariq Ullah @Tariq_Ullah67
6 Followers 121 Following
Allamu @Allamu157016
3 Followers 99 Following
SpiderBot @4cubit
9 Followers 91 Following
Milad Almasian @milad_almasian
13 Followers 74 Following
IMAGINA UdelaR @ImaginaUdelar
268 Followers 117 Following Somos un grupo de Estudiantes, Médicos, Ingenieros, Biólogos, y otros profesionales involucrados con la obtención y procesamiento de imágenes Biomédicas.
latruitegauloise @latruitgauloise
0 Followers 23 Following
Karl Makepeace @ionsbyfriday
144 Followers 2K Following Proteomics 🩸 | Mass Spectrometry ✨ | Structural Biology 🧬 | Network Biology 🕸️ | Bioinformatics 💻 | Canada 🍁 | @Columbia 🗽
Lucia Sanchez-Ruiloba @LuciaSRuiloba
66 Followers 182 Following
XUE BAO @XUEBAO58467387
3 Followers 129 Following
Jamie Dean @jamie_a_dean
2K Followers 3K Following Junior Group Leader - Computational Radiation Biology and Oncology @RadNetCRUKCoL @UCLmedphys @uclcancer. Tweets my opinion.
Flavia Maria Galeazzi @GaleazziFlavia
45 Followers 320 Following Brown University, Biological Physics and Computer Science
Craig Parker @logicSA06182
302 Followers 3K Following Data Scientist at Wits RHI | Climate & Health | Exploring intersections of Public Health, Climate Science & AI | Runner|| Views are my own
lenka cernikova @lenka_cernik
109 Followers 436 Following There are no perks. Permanently with my head in the clouds. Pessimist and lover of chaos, raccoons and opossums.
Artsemi Yushkevich @Artsemi_Y
42 Followers 164 Following
Nathan Spencer @nathantspencer
182 Followers 331 Following Lead software engineer at @syGlassVR, building virtual reality software for scientific research and education.
Ravi Teja @ravi5693
121 Followers 326 Following PostDoc @ The Rosalind Franklin Institute, Harwell Science and Innovation Campus
Uzi @Uzi_Hadad
1 Followers 24 Following
Meiosis Community @MeiosisResearch
347 Followers 334 Following A place for sharing the stories of the people behind the science of #meiosis
ખ@n&a @ZaraZara157619
32 Followers 394 Following
Lindsay @LindsayGee92
0 Followers 69 Following
Alejandra Trenchi @AlejandraTrenc1
0 Followers 65 Following
Robert Haase @haesleinhuepf
11K Followers 4K Following Image Data Scientist, Lecturer, Training Coordinator @Sca_DS / @UniLeipzig, also @NFDI4BioImage, @NEUBIAS_, @GloBIAS_, GPUs, LLMs, AI, #openscience, views:mine
Rita Strack @rita_strack
22K Followers 4K Following Scientific editor at Nature Methods. Ph.D. Also at @[email protected] 🔬 All tweets and comments represent my independent views. (she/her)
Uri Manor 💔 @manorlaboratory
14K Followers 9K Following Ass. Prof & Director UCSD Goeddel Family Technology Sandbox; CZI Imaging Scientist; Hard-of-hearing; Follows≠endorse; we ❤️ organelles/actin/cochlea/neurons
Stephan Preibisch @preibischs
4K Followers 2K Following Open Science Software Enthusiast - Director of Scientific Computing Software at HHMI Janelia - also on Mastodon @[email protected]
Jennifer Waters @JenCWaters
6K Followers 419 Following Microscopist builder. Prefers photons over AUs. Director of the Core for Imaging Technology & Education (formally the NIC), organizes/teaches @QIatCSHL course
Anne Carpenter, PhD @DrAnneCarpenter
21K Followers 2K Following Discovery in images. Enthralled by science. 5 kids. She. SAB Recursion, Quiver. Founder SyzOnc. https://t.co/CQCHnSAc9M
Ulrike Boehm 🔬👩.. @Ulrike_Boehm
5K Followers 448 Following Optical Scientist & Project Lead at @ZEISS_group | #openscience & #womeninscience advocate | Operates @OptNanoscopy @Women_Research
Elisabeth Kugler @KuglerElisabeth
4K Followers 3K Following Science Communicator | Biomedical Image Analyst | Biologist || Director at @Zeeks_Art || #DataScience #SciArt #sciComm #DevBio
CZI Science @cziscience
27K Followers 573 Following Supporting the science and technology that will make it possible to cure, prevent, or manage all disease by the end of the century.
Loïc A. Royer 💻�.. @loicaroyer
6K Followers 2K Following Director of Imaging AI & Sr. Group Leader @czbiohub SF #zfish #devbio #zebrahub #SelfSupervised #AI #Lightsheet #Imaging co-creator of @napari_imaging
Chan Zuckerberg Initi.. @ChanZuckerberg
26K Followers 461 Following Building technology, community-driven solutions and collaborative partnerships for a more inclusive, just and healthy future.
Alister Burt @AlisterBurt
2K Followers 1K Following ❄️🔬 cryo-EM @genentech views my own - love imaging and open source (especially 🐍) prev. @MRC_LMB @napari_imaging @IBS_Grenoble
Rocco D'Antuono @RogerDAntuono
573 Followers 679 Following
Juan Nunez-Iglesias @jnuneziglesias
2K Followers 236 Following CZI Imaging Software Fellow; Co-author of @elegantscipy ; Co-creator of @napari_imaging ; Research Fellow @MonashUni @MonashBDI Mastodon: @[email protected]
Kevin Dean @kD3AN
3K Followers 1K Following Assistant Professor at UT Southwestern - Working to shed light on exceedingly rare yet important biological events.
Anna Klemm @ahklemm
1K Followers 544 Following BioImage Analyst, Head of BioImage Informatics Facility, @SciLifeLab, @NBISwe @biif_sweden
Pavel Tomancak @PavelTomancak
9K Followers 1K Following Developmental biologist @mpicbg with interest in imaging, computers & evolution Director of @CEITEC_Brno Funding Father of @FijiSc @FlyJedi Tweets are my own
Joanna Pylvänäinen @JwPylvanainen
886 Followers 679 Following Image analysis | Infrastructure | Education | PhD candidate
Virginie Uhlmann @VirginieUhlmann
1K Followers 343 Following Director of the BioVisionCenter at UZH and visiting group leader at EMBL-EBI. Loves bioimages, mountains, and birds.
DeepLabCut 🦄 @DeepLabCut
10K Followers 4 Following Python package for markerless pose estimation 4 animals (including humans) | free, open code | dev by @mwmathislab @amathislab
Johannes Kappel @JohannesKappel
354 Followers 851 Following PostDoc @FMIScience working on Connectomics & Cognition | Previously @MPIforBI @NYULH_Neuro 🇨🇭🇩🇪🇺🇸
Isabela Presedo-Floyd @isabelapf2
187 Followers 36 Following UX/UI Designer at Quansight Labs. (she/her)
Miguel de Icaza ᯅ @migueldeicaza
96K Followers 5K Following Fun Stack Vibing. Started Xamarin, Mono, Gnome; was MSFT/.NET/Xamarin/Mono/VSMac/AI https://t.co/QkbDDWMXRf @migueldeicaza.bsky.social
SWC @SWC_Neuro
5K Followers 842 Following The Sainsbury Wellcome Centre aims to discover the fundamental principles of how the brain drives behaviour. Based at @ucl, funded by Gatsby and @wellcometrust.
Heath Patterson @NHeathPatterson
92 Followers 98 Following Director of Spatial Biology Bioinformatics at @AspectAnalytics
Christopher Schmied @ChriSchmied
1K Followers 870 Following Data Scientist | Bioimage Analyst - passionate Scientist & Researcher; Computer Vision; Data Analysis; Microscopy; Biology. He/His
Suckjoon Jun's lab @ .. @junlab_ucsd
899 Followers 579 Following We study quantitative cell physiology. Mother machine/Adder Principle/Entropy & chromosome segregation. Living Histories talk: https://t.co/fhPhSmXinn
Laura Žigutytė @zigutyte
162 Followers 212 Following PhD student at @EKFZdigital Kather Lab, alumna of #BiAPoL. Interested in ML applications for biomedical images & explainability of AI👩🏻💻🧬
TorchIO @TorchIOLib
351 Followers 398 Following Medical image preprocessing and augmentation for deep learning. Part of the @PyTorch Ecosystem. Learn more on YouTube: https://t.co/SUOEefPx9B. Tweets by @fepegar_
Hanjin Liu @liu_hanjin
234 Followers 198 Following PhD in biophysics at UTokyo. Interested in microtubule dynamics and its interaction with MAPs. Cryo-ET, fluorescence microscopy and programming. (he/him).
Molly Maleckar @mmaleck1
156 Followers 202 Following Bioscience, cells, the moving parts, and the stories we tell.
Josh Dorrington @DorringtonJosh
544 Followers 370 Following Postdoc at KIT, interested in extreme event predictability, atmospheric regime dynamics, and mid-latitude variability. Soon to be MSCA postdoc fellow in Bergen!
DeMets Richard @DemetsRichard
99 Followers 160 Following Bio-info-optico-physicist still looking for the meaning of life. Research Fellow | Microscopy Facility & Bioimage Analyst group member
zara weinberg 🧪�.. @weinberz
8K Followers 5K Following cell signaling, synbio, publication anarchist, mentoring, teaching, curiosity, caring. #NIHMOSAIC Scholar w/ @HanaScientist 🧙🏻♀️👩🏻🔬🏳️🌈⚧ she/her
Akaash Kumar @AkaashKumarBME
1K Followers 497 Following Engineer interested in microscopy, imaging & cell biology. MRC Laboratory of Molecular Biology & University of Cambridge.
Peter Sobolewski @psobolewskiPhD
1K Followers 2K Following #Duke #UCSD Alum; Recovering Academic; Research IT @jacksonlab; @napari_imaging core dev; @sci_find Council
Alison Forrester @AlisonForreste3
666 Followers 1K Following ER, trafficking & microscopy aficionado. Group leader (@frsFNRS Chercheur Qualifié) of the "HomER" team (think Odyssey not Simpsons) @UNamur (Belgium)
Lukasz Migas @lgmigas
254 Followers 438 Following Postdoc | Data scientist | Amateur software developer | https://t.co/Kn4J8Ffdwg
Peter Louis ⚕️�.. @MDJDPathology
801 Followers 4K Following Rutgers RWJMS Pathology & Laboratory Medicine, Computational Pathology, Precision Medicine, Data Science, Machine Learning, T/RT = me, myself & #AI
Kay Schink @kschink
1K Followers 1K Following Cell Biologist interested in membrane trafficking, phosphoinositides, macropinosomes and fancy microscopes. Associate Professor, UiO @kschink.bsky.social
Bodenmiller lab @BodenmillerLab
2K Followers 180 Following We develop experimental and computational methods to study tumor ecosystems at single-cell level and explore how to target cancer cells @DQBM_uzh and @ETH_DBIOL
Quansight @quansightai
3K Followers 428 Following Quansight is a PyData consulting firm rooted in the scientific Python community. Follow us for company news and updates about PyData projects, people & events.
Gonzalo Peña-C 👷�.. @goanpeca
2K Followers 3K Following 🐍 Software Eng & Data Sc 🙌🏼 Open Sourcing @quansightai 🚀 Core-Dev @ProjectJupyter 👷 Civil & Water Resources Engineer @UIS Opinions are my own.
Marlene @davitorialobo
220 Followers 519 Following PhD student @LIDo@UCL, programming newbie #Python #Computervision #Opensource #mombie 🧟♀️
Travis Oliphant @teoliphant
36K Followers 773 Following Creator of SciPy, NumPy, and Numba; founder and Director of Anaconda, Inc. Founder of NumFOCUS. CEO of Quansight
Giovanni Palla @g_palla1
976 Followers 1K Following PhD student @MunichDS @ICBmunich @HelmholtzMunich he/him
Daniyah @DaniDawsary
34 Followers 79 Following Computer Scientist - Alumni @EdinburghUni Animal & Environmental Enthusiast 🐈🐆🐅🌎
OpenOrganelle @OpenOrganelle
390 Followers 86 Following EXPLORE CELLS & TISSUE AT NM RESOLUTION: High res 3D-EM datasets, automated segmentations, & analyses of intracellular sub-structures and organelles
Sara Rolfe @SaraRolfe
375 Followers 440 Following Research scientist. UW + SCRI. 3D morphology, computer vision, automated phenotyping, open image science. She/her. Also on https://t.co/EfTEVKPgUu
Kayley Hake @Kayley_Hake
2K Followers 2K Following Microscopist | Scientist | Artist | 🔬 @calico | PhD @berkeleyMCB @Choano_Lab
Abigail McGovern @AbiIsNotABot
186 Followers 142 Following Final year PhD | computational biology | hoping to bridge some silos |👩🏻💻🔬☕️🐾🌳🧗♀️🥃 | she/her
Kristina Ulicna, PhD .. @KristinaUlicna
14K Followers 12K Following Research Scientist 👩💻 @Valence_AI 💻🧪, powered by @RecursionPharma 🔬🧬 | Visiting @Mila_Quebec in Montréal 🇨🇦 | 👩🔬 Into single cells 🧫 via #python 🐍
Marion Louveaux @MarionLouveaux
542 Followers 46 Following Presale manager at @Opendatasoft Views are my own. #rstats developer #opendata #dataviz
emily y spahn @eyspahn
929 Followers 2K Following data/ML/AI/python, musician, lover of cute things. She/her. Ⓥ 🌈
philsmoot @philsmoot
28 Followers 72 Following
CSHL Microscopy Share.. @CSHLmicroscopy
1K Followers 1K Following St. Giles Foundation Advanced Microscopy Center, directed by @ErikaWee @CSHL. #microscopy #3Dimaging🔬🦠🧠🌱🧬
Justin Kiggins @neuromusic
6K Followers 2K Following Child of the American West. Growing a plugin ecosystem for @napari_imaging. he/him. Opinions my own. Don't Texas my Arizona. @[email protected]I wrote a small interactive application in @napari_imaging allowing us to specify in 3D the positions and orientations of each γTuSC of interest. Localised reconstruction then significantly improved the density of the unidentified coiled coil protein! github.com/alisterburt/na…
@Daniel_Wa19 @TechnionLive Thanks Yael Lupo-Haber for a great @napari_imaging workshop. Thanks Yael, Nitsan Dahan and Maayan Duvshani-Eshet for hosting us, and @IRCF7 for the support through the #image_analysis network.
Had a great attendance at our intro to image analysis workshop at @KingsCollegeLon this week, demonstrating how to get started with @FijiSc, @ProjectJupyter and @napari_imaging for #BioImageAnalysis Watch this space for announcements on future workshops!
@DanCF93 @PertzL @napari_imaging this data is processed in a seperate notebook, napari is only used for visualisation here. stardist+btrack for epithelia with dividing cells. For single cells usually cellpose or conv-paint. For tracking of non-dividing cells, we use trackpy. What are your cells like?
@napari_imaging really redefines how we interact with our datasets !
Stem cell colonies from @PertzL 🤝 interactive data visualisation in @napari_imaging. Segmentation, tracking, single cell signalling states... So much fun to explore and search for patterns this way
Stem cell colonies from @PertzL 🤝 interactive data visualisation in @napari_imaging. Segmentation, tracking, single cell signalling states... So much fun to explore and search for patterns this way
Hey, #image analysts! Thanks to the #EuroBioImaging @nfdi4bioimage "Image Analysis in Galaxy" hackathon, new tools & resources are available in the cloud ☁️via @galaxyproject. Find out what's available ⤵️@napari_imaging @CellProfiler Cell Pose & more! eurobioimaging.eu/news/new-resou…
Nellie is easy to install and has a @napari_imaging GUI for point and click processing, vis., and analysis. Sample file is in the repo, so you can try it out now! It's also open source and 100% python if you want to poke around (or contribute!) github.com/aelefebv/nellie 🧵2/N
Attention organelle enthusiasts!! I am beyond thrilled to introduce Nellie: a fully automated pipeline for organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy. paper: arxiv.org/abs/2403.13214 github: github.com/aelefebv/nellie 🧵1/N
Finally managed to spend some time on napari-live-recording: updated documentation and merged changes for the image processing pipeline. You can check the plugin here: github.com/jacopoabramo/n… @napari_imaging
Amazing😎Hematoxylin/Eosin-Mimetic NonDestructive 3D Histology of FFPE archived tissue TOPRO3+Eosin➡️ Optical clearing with ethyl cinnamate➡️ Light-sheet microscopy➡️ Converted to HE-like image with FalseColor-Python➡️ Bioimage analysis with Napari @napari_imaging What's the…
End of an era! Yesterday was my last day @cziscience. Many thanks to all my former colleagues and collaborators for a great six years!! I'm now onto my next adventure focused on AI x Bio. Stay tuned ... 🚀
Prestocell is python-based, and uses a unique persistence homology approach to help you segment cells in 3d. We leverage @napari_imaging , because it’s free and awesome!
Drumroll, Please 🥁 🥁 🥁 #QuansightLabs’ @melissawm is now a core developer on @napari_imaging, a graphical user interface and a plugin ecosystem for various image analysis tasks used by scientists daily. 🧪 Outstanding work, congratulations, Melissa! 🎉 #OpenSource #Python
Spotiflow achieves SOTA results on 7 synthetic and real datasets while being faster than commonly used iST spot detection methods. It comes with pre-trained models, a python library, and a plugin for @napari_imaging github.com/weigertlab/nap…
Our new @napari_imaging annotation tool is out today on Biorxiv. We hope it will help the community. Please spread the word and RT. @BIOMAGlab #deeplearning @spreka007 biorxiv.org/content/10.110…
Because I'm a nerd, I wanted to show plotly figure inside a Qt widget without Qt web engines.
Are you a microscopy developer, an advanced user, or a student working in optics? Check this out! A comprehensive simulator of realistic PSFs for #napari. A joint effort with @FernandoCapril2, @AndreaBassi78 and @FerStefaniLab, fully #Python open-source napari-hub.org/plugins/napari…
The @napari_imaging 0.4.19rc1 release candidate is on PyPI! You can install it with `pip install -U --pre napari`. Help us put out the best release possible by trying it out! 🙏 This is a bug fix & maintenance release but there's exciting stuff happening. Here's what to expect:
Visual evidence from @perlman from my talk about the @napari_imaging community. Repo with my slides: github.com/psobolewskiPhD…
I forgot to take some photos, but had the pleasure to participate in the—hopefully—inaugural Northeast Bioimaging Analysis Meeting hosted by @jacksonlab Awesome folks & perfect size for kickstarting community building in the area. ❤️ #BioImageAnalysis
Trends for United States
You might like
