Paul T Kim @paultkim_ipd
PhD Student, @UWproteindesign - excited to work on machine learning methods for rational protein design. Also core @DNADeviants. Seattle Joined November 2021-
Tweets630
-
Followers975
-
Following417
-
Likes864
The true value of jupyter notebook for ML/data science is that it is a perfect debugging tool. Your project code should be structured in a way that makes it easy to copy paste/import large sections into a jupyter notebook for when you have to debug.
I’m excited to share our significantly-updated preprint on de novo antibody design, where we now demonstrate the structurally accurate design of scFvs (in addition to VHHs) with RFdiffusion! biorxiv.org/content/10.110…
FusOn-pLM is out in @NatureComms!!! 🎉 An INCREDIBLE effort (and a lot of sleepless nights! 🛏️) from my AMAZING 2nd year PhD student @SophieVincoff and her team to train a new pLM that captures properties of some of the MOST disordered and pathogenic proteins known: fusion…
Evolution of the setup - personal laptop running separately w/ linked keyboard and mouse, ipad sidecar for terminal/calendar/todolist, poster board to not get distracted by people walking down the hall, logitech ergonomic keyboard and vertical mouse (saved my wrists)
Basically the customer support experience with any Google produce. Idk what they are doing over there but it seems like anything that cannot be fully automated goes into a doom spiral of low level customer support reps saying they will try to escalate and then nothing happening.
Basically the customer support experience with any Google produce. Idk what they are doing over there but it seems like anything that cannot be fully automated goes into a doom spiral of low level customer support reps saying they will try to escalate and then nothing happening.
Ok anyone else notice Claude has been nerfed recently?
Great post, cryo is so cool.
i rabbit-holed into the Genesis Sim codebase because the website is hypey and unclear; and I didn't want to just blindly retweet. It's basically like Mujoco but with more advanced materials/rendering/solvers, written all in Python thanks to being powered by Taichi, which makes it…
i rabbit-holed into the Genesis Sim codebase because the website is hypey and unclear; and I didn't want to just blindly retweet. It's basically like Mujoco but with more advanced materials/rendering/solvers, written all in Python thanks to being powered by Taichi, which makes it…
this looks unreal
Madrid’s metro was 71 miles long in 1995. That would be the world’s 51st longest today, reasonable considering Madrid is the 57th largest city by population. Yet over 12 years, the metro would ~3x in length at costs much lower than was thought possible. Here’s how they did it🧵
When you call a business and the automated answer goes on about hours, location etc. Very annoying. If I’m calling it’s because I want info that I can’t just look up online.
That deep anxiety when you hit play on the validation run / open wandb and wait for the metrics to load. The universe has decided whether your work was good and now the result is about to be revealed to you.
Join me for the @lab_berger seminar on Wednesday where I'll be talking about #PoET, shrinking protein language models, and protein engineering @openprotein!
Claude Sonnet is the best interface for matplotlib.
This is an ice core from West Antarctica. The black ring on it is a layer of volcanic ash deposited some 21,000 years ago. This and other ice cores can help us to learn about the past, including Phoenician and Roman history🧵
Tech founders after watching Starship
If you are a technical person (engineer, quant, mathematician) interested in learning biology, I encourage you to hit textbooks and memorize the "things", eg. cytokines, surface proteins, cell types, pathways, in core fields like immunology. You will be averse to this because…
1/ Can Large Language Models (LLMs) truly reason? Or are they just sophisticated pattern matchers? In our latest preprint, we explore this key question through a large-scale study of both open-source like Llama, Phi, Gemma, and Mistral and leading closed models, including the…
Now online: We created de novo insulin receptor agonists using computational protein design! @EunheeChoi12 @XiaochenB @PreethamVi @UWproteindesign #BakerLab biorxiv.org/content/10.110…

Sergey Ovchinnikov @sokrypton
16K Followers 4K Following Scientist, Assistant Professor @MITBiology, #FirstGen, ProteinBERTologist, 🇺🇦 No Human is illegal. Moving to: https://t.co/sow6IRD3jj
José Luis Ricón Fer... @ArtirKel
22K Followers 1K Following Head of Theory at @RetroBio_ , enjoyer of things, blog: https://t.co/8xDYgWAJHB
Kevin K. Yang 楊凱�... @KevinKaichuang
21K Followers 6K Following Principal Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
David Juergens @DaveJuergens
3K Followers 2K Following Machine learning for molecular design. Currently: Postdoc @StanfordUChem @mtzlab. PhD @UWMolES @UWproteindesign. B.S. @UWChemE
Jue Wang @jueseph
2K Followers 759 Following Research scientist @googledeepmind. Formerly @UWproteindesign @ginkgo @HMS_SysBio.
Phil Leung @definitelyphil
1K Followers 681 Following Co-founder @Xaira_Thera | @UWProteinDesign PhD https://t.co/HCJy0IyM0p
Basile Wicky @BasileWicky
1K Followers 424 Following Protein design & synthetic biology • Asst. prof. @ETH_BSSE
Noelia Ferruz @ferruz_noelia
5K Followers 754 Following Group leader at @CRGenomica. Generative models for protein design 🥼🧪💻. Mountain lover 🏃♀️🚵♀️
Ruxandra Teslo 🧬 @RuxandraTeslo
24K Followers 3K Following Genomics PhD 🧬 @sangerinstitute | Somatic Evolution | long- form https://t.co/ipFMYGuR84 | Emergent Ventures | views my own | biofoid
Vega Shah @dr_alphalyrae
19K Followers 4K Following AI for Life Sciences & Healthcare @NVIDIA | trained as a scientist from @JGI, @UW, @UCBerkeley | building global community @TechBi0 | views are all mine
Helen Eisenach O'Brie... @HelenEisenach
874 Followers 327 Following Baker & King labs @UWproteindesign | alum @Harvard | novel protein nanomaterials and deep learning
Institute for Protein... @UWproteindesign
17K Followers 628 Following We create proteins that solve challenges in medicine, technology & sustainability 🟡 2024 Nobel in Chemistry 📍@UWMedicine — https://t.co/1PR2DtKdeB
Kelvin Lau 🧬🧪�... @klausenhauser
3K Followers 3K Following 🇨🇦🇭🇰 @EPFL_en protein production + structure facility 🇨🇭| ex @ubc @uwaterloo @unige_en | #proteins #plants #transit #cats #politics | My views + ☁️ 🪡 🐘
Will Barr @will_barrcode
782 Followers 2K Following Currently: PhD @PageLabXY @WhiteheadInst @MITBiology
Amos Schorr @amos_schorr
663 Followers 1K Following Building something to make emerging fields work better faster | Strong beliefs, loosely held |
Shingo Honda (本田 ... @akg_entrance
2K Followers 949 Following Postdoc @UWproteindesign; Protein design/Analytical chemistry/Single-molecule biophysics/Cell engineering/ORCID iD: https://t.co/wvKDMBiKaG
Jason Zhaoxing Zhang @jasonzxzhang
1K Followers 734 Following Molecular tool designer for signaling | Assistant Professor at @UCLA | 🏳️🌈🇺🇸 not on Twitter, on BlueSky: https://t.co/eaiMcFDhE1
Will Chen @wchenomics
766 Followers 670 Following @DamonRunyon Fellow at Baker lab @UWproteindesign. PhD with @JShendure. mainly at https://t.co/WpSk6RTizP
Carita @XiaominPu
34 Followers 339 Following Entrepreneur in jewelry and 3D CAD generation. Former VC investor@NLVC.
Rafi Brent @RafiBrent
19 Followers 12 Following PhD student at the Institute for Protein Design | Baker Lab | Machine Learning for Protein Design | University of Washington Molecular Engineering || Yale MB&B
ElsaEzekiel @qTHTqilI8CvF7
15 Followers 904 Following
PhyllisBill @Fg5Y5bd86Xvsme
15 Followers 597 Following
邯郸女s寻固定�... @tezzj79822456
30 Followers 634 Following 才玩推 刚步入社会开始工作 不卖艺 没课表,只调教不谈情。上推只为体验现实生活中体验不到的刺激,距离近可线下无🚪槛,唯一联系方式 https://t.co/j9SA5QYx6p欢迎来骚扰。
Riausouk @Riausouk434696
15 Followers 1K Following
Eguouawqqu @Eguouawqqu3492
24 Followers 2K Following
Yliser @Yliser7337941
20 Followers 1K Following
Anjali Mishra @anjali461721
166 Followers 4K Following Biochemistry Undergrad with interest in Bioinformatics
Maeve Block @BlockMaeve61426
114 Followers 7K Following
Clay Jenkins @jenkins_cl93376
100 Followers 4K Following
Javier Maravall Lópe... @javier_maravall
83 Followers 302 Following PhD student with David Reich and Alkes Price @Harvard. Interested in human population, statistical and evolutionary genetics.
Vaishnav Jadhav @Vaishna70086836
50 Followers 516 Following
朱凯旋 @zhu963396
43 Followers 2K Following
Jagabandhu Sahoo @Jagabandhu26049
105 Followers 1K Following
Geeqfuid @Geeqfuid884032
34 Followers 1K Following
Shine @Shine1864964
52 Followers 4K Following
Sam Sinai @samsinai
3K Followers 3K Following Co-founder and Head of Machine Learning @Dyno_Tx. Previously CompBio @Harvard + CS/AI @MIT. Tweets are my own views/interests.
Pritam Biswas @PritamB91378123
20 Followers 834 Following
🍵 @thesatcha
4 Followers 5 Following
GustaveBelle @yO17XaphgZ62Q
138 Followers 4K Following
FayAntoinette @8Gdk9281fv4DF
110 Followers 3K Following
MignonIsaac @t31W9036R2J29Fx
105 Followers 4K Following
Geovanny Rowe @GeovannyR5336
30 Followers 661 Following
Spence Xu @SpencerXu14
1 Followers 116 Following
Seysores @Seysoresl_XDkC
17 Followers 609 Following
dekiruko @dekiruko71949
6 Followers 116 Following
Nathan Chisvo @Nathan_Chisvo
56 Followers 1K Following
骑士 @qsh02237727
1 Followers 167 Following
Kejun (Albert) Ying @KejunYing
2K Followers 1K Following F99K00 Postdoc fellow Wyss-Coray @Stanford & Baker lab @UWproteindesign | Prev. Bio PhD & CS MS @Harvard | BoA Consortium core | Solving aging to solve universe
Meruem @Meruem49839142
177 Followers 8K Following
Lauren Pearson @laurenap_
2K Followers 4K Following cs/bio @uoft | neurotech + bioML | cognitive cartography @mit_csail (kellis lab) | prev. HCI/BCI research @terctweets
quratulain (annie) kh... @QuratulainAhsa2
401 Followers 2K Following defense & healthtech. 23 soon. ex vc @cbiventures scout @lvlupvc @goaheadvc | @joinfoundess | psych @uoft @yorkuniversity prev @harvard @sickkids @camh research
Yinying Yao @YinyingYao
96 Followers 490 Following 🧩PhD student in 🧬protein design👨🔬He/Him🐱🐶Cat&dog lover w/o any pets🌈INFP💻Glue coder📸Random photographer 🦅Ravenclaw🦋@yaoyinying.bsky.social
⚫️ hgtp://mr.ande... @v1ew_s0urce
1K Followers 6K Following $ADS | $DAG | $DOR | $PRE | $MNW node Runner | former Director of Technical Programe Management @VICE - looking for new opportunities in London! @taolie_sol
Debendra Kumar @Debendra_12
47 Followers 904 Following Research Scholar at CSIR-IGIB|| Computational Structural Biology Lab|| Autophagy|| Protein Structure
Saacnicteh Toledo-Pat... @SaacNicteh
650 Followers 1K Following Principal Investigator | Buribushi Fellow @OISTedu working on Molecular Bioengineering & Evolution, @MaxPlanckAlumni, 🇲🇽🇩🇪🇯🇵🏳️🌈 🏳️
Tom Knight -- e/🦀 @TomKnightSynBio
3K Followers 4K Following Engineer of stuff that is alive or computes. Follow us all to that blue place.
Kristoffer H. J. @KrisHaurum
501 Followers 734 Following Assistant Professor at DTU, using CRISPR to decipher T cell signaling @[email protected]
NK Escareño @NKcellMX
706 Followers 5K Following Quantitative immunologist into cell death & NK cells @MPIbp #MembraneDynamics #Optogenetics #NLRP3 🇲🇽
Ian Ferguson @idferguson
204 Followers 1K Following Cancer Biology PhD student at Stanford in the Khavari Lab
aydee’s space @aydeespc
28 Followers 459 Following
Thuan-Thien Dinh (Eze... @CamoDetect
34 Followers 276 Following A young scientist fueled by an unwavering passion for revolutionizing protein design
Sergey Ovchinnikov @sokrypton
16K Followers 4K Following Scientist, Assistant Professor @MITBiology, #FirstGen, ProteinBERTologist, 🇺🇦 No Human is illegal. Moving to: https://t.co/sow6IRD3jj
José Luis Ricón Fer... @ArtirKel
22K Followers 1K Following Head of Theory at @RetroBio_ , enjoyer of things, blog: https://t.co/8xDYgWAJHB
Kevin K. Yang 楊凱�... @KevinKaichuang
21K Followers 6K Following Principal Researcher in BioML @MSFTResearch (@MSRNE). He/him/他. 🇹🇼
David Juergens @DaveJuergens
3K Followers 2K Following Machine learning for molecular design. Currently: Postdoc @StanfordUChem @mtzlab. PhD @UWMolES @UWproteindesign. B.S. @UWChemE
Jue Wang @jueseph
2K Followers 759 Following Research scientist @googledeepmind. Formerly @UWproteindesign @ginkgo @HMS_SysBio.
Phil Leung @definitelyphil
1K Followers 681 Following Co-founder @Xaira_Thera | @UWProteinDesign PhD https://t.co/HCJy0IyM0p
Joseph Watson @_JosephWatson
3K Followers 97 Following Co-Founder @ Xaira Therapeutics Former Baker Lab PostDoc at @UWproteindesign. Interested in generative modelling for molecular design. Views my own.
Andrej Karpathy @karpathy
1.4M Followers 1K Following Building @EurekaLabsAI. Previously Director of AI @ Tesla, founding team @ OpenAI, CS231n/PhD @ Stanford. I like to train large deep neural nets.
Basile Wicky @BasileWicky
1K Followers 424 Following Protein design & synthetic biology • Asst. prof. @ETH_BSSE
Nate Bennett @naterbennett0
1K Followers 196 Following Co-Founder at Xaira Therapeutics. De novo protein binder design. Former Postdoctoral Scholar at @UWproteindesign.
Noelia Ferruz @ferruz_noelia
5K Followers 754 Following Group leader at @CRGenomica. Generative models for protein design 🥼🧪💻. Mountain lover 🏃♀️🚵♀️
Ruxandra Teslo 🧬 @RuxandraTeslo
24K Followers 3K Following Genomics PhD 🧬 @sangerinstitute | Somatic Evolution | long- form https://t.co/ipFMYGuR84 | Emergent Ventures | views my own | biofoid
Tony Kulesa @kulesatony
9K Followers 2K Following biotech startups @pillar_vc and @petribio Prior: @MIT, @BroadInstitute
Ellen Zhong @ZhongingAlong
8K Followers 883 Following Assistant Professor @PrincetonCS. #ai4science #proteins247 #cryoem #cryodrgn ❄️🐉 Prev: @MIT @DeepMind @DEShawResearch. Currently moonlighting @generate_biomed.
Vega Shah @dr_alphalyrae
19K Followers 4K Following AI for Life Sciences & Healthcare @NVIDIA | trained as a scientist from @JGI, @UW, @UCBerkeley | building global community @TechBi0 | views are all mine
Anshul Kundaje (anshu... @anshulkundaje
27K Followers 3K Following Federally funded academic research is the innovation engine of the US economy. Reform is welcome. Destruction will have long term consequences.
Alex Rives @alexrives
10K Followers 906 Following AI for scientific discovery. Broad and MIT. Chief scientist at @EvoscaleAI and founder and scientific director of the ESM project previously @Meta.
Helen Eisenach O'Brie... @HelenEisenach
874 Followers 327 Following Baker & King labs @UWproteindesign | alum @Harvard | novel protein nanomaterials and deep learning
Institute for Protein... @UWproteindesign
17K Followers 628 Following We create proteins that solve challenges in medicine, technology & sustainability 🟡 2024 Nobel in Chemistry 📍@UWMedicine — https://t.co/1PR2DtKdeB
Sarah Gurev @sarahgurev
1K Followers 2K Following Postdoc with Debora Marks. Previously MIT EECS PhD. Starting FutureHouse Fellowship (in SF for September). Come talk to me about modeling viral/immune proteins!
Andrew Hunt @Andrew_C_Hunt
346 Followers 446 Following #protein enthusiast and #cellfree evangelist | @newmexicotech to @nu_chbe to @UWproteindesign | Team lead EBRC In Translation Podcast
Pranam Chatterjee @pranamanam
4K Followers 339 Following Generating biologics to program biology! 💻🧫 Assistant Professor at @Penn | Co-Founder @GametoGen and @UbiquiTxINC | Formerly @MIT '16 '18 '20 and @harvardmed
Jim Fan @DrJimFan
327K Followers 3K Following NVIDIA Director of Robotics & Distinguished Scientist. Co-Lead of GEAR lab. Solving Physical AGI, one motor at a time. Stanford Ph.D. OpenAI's 1st intern.
owl @owl_posting
11K Followers 803 Following technical staff @noetik_ai || ex ml eng @dyno_tx || i write/podcast about bio ml at https://t.co/QPTHsR3fzm || art on https://t.co/SwGiuSjlXF
François Chollet @fchollet
576K Followers 817 Following Co-founder @ndea. Co-founder @arcprize. Creator of Keras and ARC-AGI. Author of 'Deep Learning with Python'.
Samuel King @samuelhking
1K Followers 582 Following @Stanford Bioengineering PhD candidate / Biological AI in @BrianHie’s lab @arcinstitute
Aditi Merchant @aditimerch
328 Followers 274 Following BioE PhD student @stanford in the Hie Lab // ML for SynBio
Zhou Xian @zhou_xian_
15K Followers 139 Following PhD student in robotics & AI @CMU_robotics. (Occasionally) landscape photographer.
Yaron Lipman @lipmanya
4K Followers 466 Following Research scientist @AIatMeta (FAIR), prev/visiting @WeizmannScience. Interested in generative models and deep learning of irregular/geometric data.🎗️
Iambic Therapeutics @iambic_ai
3K Followers 1K Following Iambic is a leading clinical-stage life-science and technology company developing novel medicines using its AI-driven discovery and development platform.
Jag Singh @JagveerLLC
103 Followers 371 Following Software Engineer @ArzedaCo | Seattle, WA | @BitsInBio
Olivia Reszczynski @ogresz
127 Followers 823 Following PGY2 @UVAIMR | @Rock_Health Capital team | Former healthcare consultant | She/Her/Hers | Opinions are my own
Xinru @Xinru71
124 Followers 137 Following Protein Designer, Biochemist| From computer to bench to bedside
Richmond Boateng @Richie83982618
122 Followers 459 Following Computational Protein Design | PhD student @UWBiochemistry @UWproteindesign | Former T&RA @WACCBIP_UG | My own views! | Friendly | He/Him/His
Jacob Stern @jacobastern
464 Followers 989 Following AI scientist @ Absci / deep learning for de novo antibody design
DrSouZ @Soumees
622 Followers 1K Following Microbiologist & Biochemist, Assistant Professor @ucsfmicrobiome @UCSF_EXP. I love it when microbes talk and I get to listen. Opinions my own.
Tuan Le @tuanle618
333 Followers 609 Following Machine Learning Researcher @Pfizer. PhD CS with background in generative modelling, computational chemistry and graph representation learning.
Simon Mathis @SimMat20
999 Followers 1K Following PhD @Cambridge_Uni | AI in protein design & engineering | biotech & environmental applications | enzymes | geometric DL | prev. @ETH_physics
Eric Gilliam @eric_is_weird
5K Followers 2K Following I write about how 20th C. R&D orgs operated | Associate @RenPhil21 and Fellow @GoodSciProject, Stanford '19. Working to build more BBNs
Daren Card, Ph.D. @darencard
970 Followers 2K Following Computational biologist researching #cancer #epigenomics @broadinstitute / @DanaFarber. Previous: evolutionary genomics / biodiversity @Harvard / @MCZHarvard
David K. Yang @davidkmyang
4K Followers 2K Following Partner @Lux_Capital. Prev: Co-founder of Latus Bio, Investor at 8VC, ML bio at Broad Institute
Alex Kesin @alexkesin
2K Followers 346 Following Mostly here to talk about drugs (the legal kind). Writing @asimovpress @worksinprogmag
Ge Liu @GeLiuSaber
590 Followers 141 Following Assistant Professor@UIUC CS, PhD@MIT CS, ex-Postdoc@Baker Lab, IPD. Focus:GenAI4Science, geometric gen model, RL/optimization, protein/molecule design
Benedikt Singer @SingerBenedikt
83 Followers 198 Following PhD Student at EPFL, Switzerland | Working on AI for Protein Design | he/him | Find me on BlueSky: @benediktsinger.bsky.social
Yang Hsia @yhsia_ipd
383 Followers 119 Following Research scientist in the Baker Lab at the @UWproteindesign.
Sebastian @SassSeabass
696 Followers 692 Following computational peptide design at @novonordisk | PhD in the @Keating_Lab at @mit | undergrad at @umncbs | bsky @ bassafras. views are my own
Mônica Gravina @mnk_grav
131 Followers 682 Following Microbiologist | MSc in Chemical and Biochemical Processes| PhD Candidate in Biochemistry | Dancer Wannabe
Saman Salike @samansalike31
42 Followers 282 Following intellectual flaneur, lover of (designed) proteins
Devon Cayer @devcayer
415 Followers 1K Following entrepreneur, founder Om, founder of 1859, inc. — love intersection of AI and techbio — prefer to build.
Paulyna Magaña @paulynamagana
433 Followers 121 Following Structural bioinformatician at #AlphaFold DB (@PDBeurope & @emblebi) | Structure prediction geek! Making AF accessible 🌐
Mauriz Lichtenstein @malichtenstein
38 Followers 164 Following Biochemist interested in programing cellular decisions and organization | MS Biochemistry @FU_Berlin | currently @UWproteindesign
Adit Shah @aditshah00
460 Followers 1K Following ml research @untillabs | ai for science | eecs @ucberkeley | prev @calneurotech @berkeley_ai @broadinstitute @EPFL_en | urbanist
Quentin Berthet @qberthet
3K Followers 2K Following Research Scientist at Google DeepMind Machine Learning - Paris
Kelvin Lau 🧬🧪�... @klausenhauser
3K Followers 3K Following 🇨🇦🇭🇰 @EPFL_en protein production + structure facility 🇨🇭| ex @ubc @uwaterloo @unige_en | #proteins #plants #transit #cats #politics | My views + ☁️ 🪡 🐘
Bo Wang @BoWang87
13K Followers 2K Following SVP and Head of Biomedical AI @Xaira_Thera; Associate Prof @UofT; Chief AI Officer @UHN; former PHD, CS @Stanford; opinions my own. #AI #healthcare #biology
Sachin Davis @SachinNDavis
199 Followers 787 Following Bioengineering Ph.D. Candidate @HughesLabPenn @pennbioeng. Part-time mountain man. Views are mine. 🇨🇦
Nicholas Larus-Stone @nlarusstone
2K Followers 1K Following Building better software for scientists @sphinx_bio
Alex Tong @AlexanderTong7
3K Followers 497 Following PI at Aithyra making models for cells and proteins.
Sagardip Majumder @sagardipm
67 Followers 68 Following Mechanical Engineer interested in research related to nanopore technology, microfluidics, bioengineering and theoretical physics.
Will Stancil @whstancil
104K Followers 472 Following I research metro policy and civil rights, focused on housing and schools. Proud member of Do-Something Twitter.
Ashish Datta @adatta02
5K Followers 2K Following Partner at @setfive Building https://t.co/evuGxQJNtF so you see better display ads @TuftsUniversity alum
Abhimanyu Gowda @Gowda_24
444 Followers 3K Following PhD student @UniofOxford | Dir. @NucleateUK | Prev: @Cambridge_uni, Founder @cubiotechsoc, Fellow @join_polaris @NPLB_org