micro-manager @manager_micro
Micro-Manager (https://t.co/MPkYDK8uO6) is open source software for microscope control. It is used by thousands of research laboratories world-wide. micro-manager.org Joined January 2021-
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Instant molecular orientation imaging using a Thorlabs camera and Micro-Manager: biorxiv.org/content/10.110…
Neat microscope auto-focus system that works with Micro-Manager: biorxiv.org/content/10.110…
Microscope objectives can be confusing, and detailed specs (or even basic properties) are often hard to find. Here's an introductory resource to help new builders and instrument designers with the basics. It's a work in progress so feedback is appreciated: amsikking.github.io/microscope_obj…
Real-time segmentation of fibroblasts allows us to grow actin skeleton in a specified direction! Cells built @Pertzlab express optogenetic construct to activate RAC. We use @manager_micro and @napari_imaging to train a pixel classifier for segmentation on live data from scope. 🧵
An Acquisition and Training Module based on @manager_micro for straightforward transformation of basic fluorescence microscopes into experimental cell mechanics rigs: pubag.nal.usda.gov/catalog/7692598
Our MicroMator paper on software to support reactive microscopy is published in @NatureComms. nature.com/articles/s4146… Big thanks to @zachrfox, @twitoSebas, @BertauxFrancois and others at @Inria and @institutpasteur.
Thanks to Mark Tsuchida you can now install Micro-Manager Python bindings using: conda install -c conda-forge pymmcore
Seem an appropriate cue to announce a MM2 plugin "LightSheetManager" to provide an easy interface to all light sheet microscopes, be they custom-built or from commercial parts. CC @Bin_YANG_Optics @DougPShepherd @kschink @MarijnSiemons @Maurice_Y_Lee @mattersOfLight @openspim
Seem an appropriate cue to announce a MM2 plugin "LightSheetManager" to provide an easy interface to all light sheet microscopes, be they custom-built or from commercial parts. CC @Bin_YANG_Optics @DougPShepherd @kschink @MarijnSiemons @Maurice_Y_Lee @mattersOfLight @openspim
napari-micromanager is coming along thanks to amazing work from @FedeGasparoli (& help from @ianhi7919!). w/ working @manager_micro property browser, illumination and ROI control, and a multi-D acquisition widget... all python and C++ with pymmcore 🎉 github.com/tlambert03/nap…
And @TalleyJLambert's and co-workers @napari_imaging @manager_micro plugin using pymmcore directly
And @TalleyJLambert's and co-workers @napari_imaging @manager_micro plugin using pymmcore directly
A cool looking @napari_imaging interface to @manager_micro using pycro-manager:
A cool looking @napari_imaging interface to @manager_micro using pycro-manager:
Fresh on the heels of Micro-Manager 2.0, we are happy to announce a completely revamped @manager_micro website at micro-manager.org. Great work by the @EliceiriK group, you will recognize elements of the imagej net design.
Out today! Pycro-Manager: open-source software for customized and reproducible microscope control. nature.com/articles/s4159…

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