COSEM @COSEMdata
Using machine learning and computer vision techniques to automatically identify and quantify all intracellular substructures & organelles in isotropic EM data janelia.org/project-team/c… Virginia, USA Joined November 2020-
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COSEM retweeted
Ever wanted to learn how to segment organelles in vEM? Or how we (@COSEMdata/@CellMapPT) generate training data for ML efforts? Look no further! You can find it all here in our recent protocol protocols.io/view/amira-ann… #teamscience #projectteams #openscience
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COSEM retweeted
Last Friday @CmHulbert presented #Paintera at #I2K2022 . Here, showing some beautiful @COSEMdata on openorganelle.org youtube.com/watch?v=rNJotg… github.com/saalfeldlab/pa…
COSEM retweeted
Some new updates on the site, including rearranging and cleaning up the dataset pages 🪄. Also, did you know that you can open (or view) any of the datasets directly in @FijiSc using either File/Import/N5 or Plugins/BigDataViewer/N5 viewer? Check it out!
COSEM retweeted
Come work with us at @HHMIJanelia with the new 🖌 Annotation & Analytics 📊 team tinyurl.com/5xxy2v95. This is a ✨ NEW ✨ multi-disciplinary team that will work with a variety of datasets (1/6)
Check out the new feature on OpenOrganelle.janelia.org!
Check out the new feature on OpenOrganelle.janelia.org!
COSEM retweeted
Still hiring for these positions at Janelia!
Still hiring for these positions at Janelia!
COSEM retweeted
2 Papers @Nature on the use of enhanced FIB-SEM to image cells and tissues at up to 4nm per voxel. The authors' AI-based analysis pipeline, which they used for reconstruction of 35 organelle classes, is available via OpenOrganelle go.nature.com/3lhin4w go.nature.com/3oEsthG
COSEM retweeted
It’s official! Our manuscript is out today in @Nature. 🥳 Additions since our preprint include a comparison of generalists trained on all training data vs specialists trained on subsets (spoiler alert: generalists win!) and #moreGolgi! rdcu.be/cy1UJ (1/3)
It’s official! Our manuscript is out today in @Nature. 🥳 Additions since our preprint include a comparison of generalists trained on all training data vs specialists trained on subsets (spoiler alert: generalists win!) and #moreGolgi! rdcu.be/cy1UJ (1/3) https://t.co/Z76NVly0Mm
COSEM retweeted
We’ve also gotten a facelift! 💁♀️ Browse all the related data for these papers and more - AND - volume renderings are now available for most segmentations. Check it out on openorganelle.janelia.org !
We’ve also gotten a facelift! 💁♀️ Browse all the related data for these papers and more - AND - volume renderings are now available for most segmentations. Check it out on openorganelle.janelia.org ! https://t.co/JlvTYgUClG
COSEM retweeted
Sounds like a great course!
COSEM retweeted
Excited to share our work on ER-to-Golgi trafficking and the dynamic nano-anatomy of ER exit sites in mammalian cells! @chiluncellbio @avweigel (1/4) authors.elsevier.com/c/1cv4PL7PXez~G
COSEM retweeted
Looks like I'll be spending a lot of time playing around with openorganelle.janelia.org soon! Great talk from @avweigel with such beautiful pictures (as always) at #AIM2021
COSEM retweeted
Meet Aubrey Weigel! @avweigel leads the @COSEMdata Team at @HHMIJanelia which is developing ML approaches to automatically identify & quantify all intracellular structures in FIB-SEM datasets of mammalian cells 🔬👩🏻💻 Happy #WomenScienceDay! #womenatjanelia #womeninscience 3/4
COSEM retweeted
Meet Lorena Benedetti!@LorenaBenedet15 is a postdoc in the Ryan & @JLS_Lab at @HHMIJanelia. She studies the role of the endoplasmic reticulum at the nerve terminal 🧫🔬👩🏻💻 Happy #WomenScienceDay! #womenatjanelia #womeninscience 2/4
COSEM retweeted
Meet Helen Farrants! @HelenFarrants is a postdoc in the @ERSchreiter lab at @HHMIJanelia. She is developing bright #biosensors for imaging neuronal activity in living organisms 🧪🌈🧑🏼🔬 Happy #WomenScienceDay! #womenatjanelia #womeninscience 1/4
COSEM retweeted
Check out @COSEMdata and openorganelle.janelia.org
COSEM retweeted
Amazing presentation at #AIMicroscopy Symposium: "Automatic whole cell organelle segmentation in volumetric electron microscopy" @avweigel @HHMIJanelia @BogovicJohn @herrsaalfeld @herrsaalfeld et al. openorganelle.janelia.org #Unet #deeplearning #microscopy
This is dope!
Thanks for the lovely write up @mariana_deniz in @preLights summarizing our recent preprint! prelights.biologists.com/highlights/aut…
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